Literature DB >> 21837214

N-(4-Chloro-butanoyl)-N'-(2-fluoro-phen-yl)thio-urea.

M Sukeri M Yusof, Nur Farhana Embong, Eliyanti A Othman, Bohari M Yamin.   

Abstract

In the title compound, C(11)H(12)ClFN(2)OS, the asymmetric unit consists of two indenpendent mol-ecules. Both mol-ecules maintain a trans-cis configuration of the positions of the butanoyl and fluoro-phenyl groups with respect to the thiono group across their C-N bonds and are stabilized by classical intra-molecular N-H⋯O hydrogen bonds. In the crystal, inter-molecular N-H⋯O, C-H⋯S and N-H⋯S hydrogen bonds link the mol-ecules into infinite chains along the c axis.

Entities:  

Year:  2011        PMID: 21837214      PMCID: PMC3152054          DOI: 10.1107/S1600536811024743

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Yamin et al. (2011 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12ClFN2OS M = 274.75 Monoclinic, a = 14.818 (7) Å b = 10.291 (5) Å c = 18.201 (9) Å β = 112.599 (12)° V = 2562 (2) Å3 Z = 8 Mo Kα radiation μ = 0.46 mm−1 T = 298 K 0.50 × 0.22 × 0.07 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.803, T max = 0.969 13771 measured reflections 4501 independent reflections 2231 reflections with I > 2σ(I) R int = 0.119

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.138 S = 0.89 4501 reflections 307 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024743/rk2280sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024743/rk2280Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024743/rk2280Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12ClFN2OSF(000) = 1136
Mr = 274.75Dx = 1.425 Mg m3
Monoclinic, P21/cMelting point = 411.7–415.5 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 14.818 (7) ÅCell parameters from 1404 reflections
b = 10.291 (5) Åθ = 1.5–25.0°
c = 18.201 (9) ŵ = 0.46 mm1
β = 112.599 (12)°T = 298 K
V = 2562 (2) Å3Plate, colourless
Z = 80.50 × 0.22 × 0.07 mm
Bruker SMART APEX CCD area-detector diffractometer4501 independent reflections
Radiation source: fine-focus sealed tube2231 reflections with I > 2σ(I)
graphiteRint = 0.119
Detector resolution: 83.66 pixels mm-1θmax = 25.0°, θmin = 1.5°
ω scansh = −17→16
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −12→12
Tmin = 0.803, Tmax = 0.969l = −13→21
13771 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.0451P)2] where P = (Fo2 + 2Fc2)/3
4501 reflections(Δ/σ)max < 0.001
307 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49078 (11)0.21242 (19)0.00799 (10)0.1269 (7)
F11.0669 (2)−0.1688 (3)0.35144 (16)0.0795 (9)
F20.3894 (2)0.7354 (3)0.12270 (17)0.0868 (9)
S11.02276 (8)−0.03047 (12)0.17159 (6)0.0509 (3)
S20.24427 (8)1.01331 (12)0.02342 (6)0.0502 (3)
Cl2−0.23288 (9)0.68710 (13)−0.21630 (7)0.0804 (5)
O10.80228 (19)0.1449 (3)0.26210 (18)0.0562 (9)
O20.0637 (2)0.6917 (3)0.07106 (17)0.0552 (9)
N10.8543 (2)0.0465 (3)0.17333 (18)0.0424 (9)
H10.83350.02120.12460.051*
N20.9869 (2)0.0693 (3)0.29214 (19)0.0428 (9)
H20.94670.10330.31030.051*
N30.0918 (2)0.8641 (3)0.00426 (18)0.0421 (9)
H30.06580.9086−0.03880.051*
N40.2217 (2)0.8449 (3)0.12431 (18)0.0447 (9)
H40.18830.78600.13600.054*
C10.5036 (3)0.1269 (6)0.0958 (3)0.0858 (19)
H1A0.45710.16080.11670.103*
H1B0.48850.03590.08310.103*
C20.6047 (3)0.1386 (5)0.1580 (3)0.0718 (16)
H2A0.61950.22990.17000.086*
H2B0.60650.09660.20630.086*
C30.6818 (3)0.0806 (5)0.1350 (2)0.0547 (13)
H3A0.67900.12080.08600.066*
H3B0.6682−0.01130.12460.066*
C40.7839 (3)0.0961 (4)0.1974 (3)0.0453 (11)
C50.9539 (3)0.0312 (4)0.2162 (2)0.0410 (11)
C61.0875 (3)0.0553 (4)0.3442 (2)0.0407 (11)
C71.1249 (3)−0.0633 (5)0.3737 (3)0.0522 (12)
C81.2206 (4)−0.0794 (6)0.4252 (3)0.0739 (16)
H81.2448−0.16130.44450.089*
C91.2793 (4)0.0285 (7)0.4472 (3)0.0822 (19)
H91.34430.01980.48160.099*
C101.2431 (3)0.1484 (6)0.4192 (3)0.0786 (17)
H101.28350.22100.43460.094*
C111.1459 (3)0.1625 (5)0.3675 (3)0.0610 (14)
H111.12090.24440.34890.073*
C12−0.2143 (3)0.6210 (5)−0.1206 (3)0.0691 (15)
H12A−0.25320.6696−0.09770.083*
H12B−0.23690.5316−0.12690.083*
C13−0.1093 (3)0.6249 (4)−0.0646 (2)0.0530 (13)
H13A−0.07130.5723−0.08650.064*
H13B−0.10360.5862−0.01450.064*
C14−0.0659 (3)0.7590 (4)−0.0487 (2)0.0490 (12)
H14A−0.06390.7934−0.09770.059*
H14B−0.10860.8147−0.03340.059*
C150.0351 (3)0.7652 (4)0.0149 (2)0.0418 (11)
C160.1846 (3)0.9006 (4)0.0537 (2)0.0386 (10)
C170.3156 (3)0.8794 (4)0.1821 (2)0.0453 (12)
C180.3983 (3)0.8244 (5)0.1795 (3)0.0566 (13)
C190.4902 (3)0.8541 (6)0.2342 (3)0.0781 (17)
H190.54570.81510.23190.094*
C200.4970 (4)0.9431 (7)0.2921 (4)0.091 (2)
H200.55840.96570.32910.109*
C210.4160 (4)0.9992 (5)0.2966 (3)0.0777 (17)
H210.42211.05880.33660.093*
C220.3243 (3)0.9664 (4)0.2409 (3)0.0571 (13)
H220.26861.00390.24380.069*
U11U22U33U12U13U23
Cl10.0706 (11)0.1612 (18)0.1063 (14)0.0426 (11)−0.0131 (9)0.0101 (12)
F10.077 (2)0.0548 (19)0.098 (2)0.0034 (15)0.0232 (16)0.0093 (16)
F20.068 (2)0.111 (3)0.081 (2)0.0213 (17)0.0283 (16)−0.0051 (19)
S10.0373 (6)0.0695 (9)0.0458 (7)0.0083 (6)0.0157 (5)−0.0007 (6)
S20.0383 (6)0.0665 (9)0.0432 (7)−0.0099 (6)0.0128 (5)0.0030 (6)
Cl20.0695 (9)0.0838 (10)0.0632 (9)−0.0010 (7)−0.0020 (7)−0.0005 (7)
O10.0393 (18)0.072 (2)0.051 (2)0.0063 (15)0.0105 (15)−0.0195 (17)
O20.0491 (19)0.050 (2)0.053 (2)−0.0104 (15)0.0043 (15)0.0103 (16)
N10.0292 (19)0.059 (2)0.035 (2)0.0022 (17)0.0072 (16)−0.0047 (16)
N20.0299 (19)0.052 (2)0.041 (2)0.0042 (16)0.0075 (16)−0.0039 (17)
N30.032 (2)0.052 (2)0.036 (2)−0.0023 (17)0.0056 (16)0.0003 (16)
N40.031 (2)0.054 (2)0.043 (2)−0.0076 (16)0.0067 (16)0.0077 (17)
C10.030 (3)0.135 (5)0.086 (4)−0.007 (3)0.014 (3)−0.035 (4)
C20.037 (3)0.110 (5)0.065 (3)−0.002 (3)0.017 (2)−0.014 (3)
C30.031 (2)0.078 (4)0.051 (3)0.006 (2)0.011 (2)−0.003 (2)
C40.037 (3)0.051 (3)0.045 (3)0.003 (2)0.013 (2)−0.001 (2)
C50.033 (2)0.040 (3)0.045 (3)−0.0013 (19)0.009 (2)0.003 (2)
C60.032 (2)0.053 (3)0.033 (2)0.004 (2)0.0073 (18)−0.004 (2)
C70.046 (3)0.055 (3)0.051 (3)0.007 (3)0.013 (2)−0.002 (2)
C80.058 (4)0.089 (4)0.061 (3)0.032 (3)0.007 (3)0.008 (3)
C90.034 (3)0.133 (6)0.063 (4)0.022 (3)0.001 (3)−0.007 (4)
C100.036 (3)0.100 (5)0.089 (4)−0.013 (3)0.011 (3)−0.026 (3)
C110.047 (3)0.055 (3)0.070 (3)0.003 (2)0.010 (2)−0.007 (3)
C120.050 (3)0.082 (4)0.068 (3)−0.022 (3)0.015 (3)−0.010 (3)
C130.046 (3)0.059 (3)0.048 (3)−0.012 (2)0.011 (2)−0.004 (2)
C140.032 (2)0.052 (3)0.060 (3)0.003 (2)0.014 (2)−0.004 (2)
C150.032 (2)0.042 (3)0.045 (3)0.000 (2)0.008 (2)−0.007 (2)
C160.028 (2)0.048 (3)0.038 (3)−0.0008 (19)0.0109 (19)−0.003 (2)
C170.031 (3)0.053 (3)0.043 (3)−0.005 (2)0.005 (2)0.010 (2)
C180.045 (3)0.069 (4)0.053 (3)0.000 (3)0.016 (2)0.005 (3)
C190.037 (3)0.104 (5)0.082 (4)0.006 (3)0.011 (3)0.025 (4)
C200.047 (4)0.105 (5)0.089 (5)−0.022 (4)−0.007 (3)0.022 (4)
C210.068 (4)0.077 (4)0.068 (4)−0.016 (3)0.005 (3)−0.013 (3)
C220.050 (3)0.053 (3)0.058 (3)0.001 (2)0.009 (2)0.000 (3)
Cl1—C11.769 (6)C6—C71.361 (6)
F1—C71.347 (5)C6—C111.365 (5)
F2—C181.350 (5)C7—C81.377 (6)
S1—C51.654 (4)C8—C91.372 (7)
S2—C161.675 (4)C8—H80.9300
Cl2—C121.791 (5)C9—C101.364 (7)
O1—C41.212 (4)C9—H90.9300
O2—C151.210 (4)C10—C111.393 (6)
N1—C41.374 (5)C10—H100.9300
N1—C51.388 (4)C11—H110.9300
N1—H10.8600C12—C131.498 (5)
N2—C51.336 (5)C12—H12A0.9700
N2—C61.433 (5)C12—H12B0.9700
N2—H20.8600C13—C141.502 (5)
N3—C161.375 (4)C13—H13A0.9700
N3—C151.380 (5)C13—H13B0.9700
N3—H30.8600C14—C151.501 (5)
N4—C161.318 (4)C14—H14A0.9700
N4—C171.430 (5)C14—H14B0.9700
N4—H40.8600C17—C221.363 (6)
C1—C21.496 (5)C17—C181.366 (6)
C1—H1A0.9700C18—C191.377 (6)
C1—H1B0.9700C19—C201.369 (7)
C2—C31.485 (6)C19—H190.9300
C2—H2A0.9700C20—C211.363 (8)
C2—H2B0.9700C20—H200.9300
C3—C41.511 (5)C21—C221.389 (6)
C3—H3A0.9700C21—H210.9300
C3—H3B0.9700C22—H220.9300
C4—N1—C5129.5 (4)C9—C10—C11120.2 (5)
C4—N1—H1115.2C9—C10—H10119.9
C5—N1—H1115.2C11—C10—H10119.9
C5—N2—C6121.9 (4)C6—C11—C10119.5 (5)
C5—N2—H2119.0C6—C11—H11120.2
C6—N2—H2119.0C10—C11—H11120.2
C16—N3—C15128.2 (3)C13—C12—Cl2112.4 (4)
C16—N3—H3115.9C13—C12—H12A109.1
C15—N3—H3115.9Cl2—C12—H12A109.1
C16—N4—C17122.1 (3)C13—C12—H12B109.1
C16—N4—H4118.9Cl2—C12—H12B109.1
C17—N4—H4118.9H12A—C12—H12B107.8
C2—C1—Cl1111.9 (4)C12—C13—C14114.3 (4)
C2—C1—H1A109.2C12—C13—H13A108.7
Cl1—C1—H1A109.2C14—C13—H13A108.7
C2—C1—H1B109.2C12—C13—H13B108.7
Cl1—C1—H1B109.2C14—C13—H13B108.7
H1A—C1—H1B107.9H13A—C13—H13B107.6
C3—C2—C1114.2 (4)C15—C14—C13114.4 (3)
C3—C2—H2A108.7C15—C14—H14A108.7
C1—C2—H2A108.7C13—C14—H14A108.7
C3—C2—H2B108.7C15—C14—H14B108.7
C1—C2—H2B108.7C13—C14—H14B108.7
H2A—C2—H2B107.6H14A—C14—H14B107.6
C2—C3—C4113.7 (4)O2—C15—N3123.0 (4)
C2—C3—H3A108.8O2—C15—C14123.2 (4)
C4—C3—H3A108.8N3—C15—C14113.8 (4)
C2—C3—H3B108.8N4—C16—N3117.2 (4)
C4—C3—H3B108.8N4—C16—S2123.2 (3)
H3A—C3—H3B107.7N3—C16—S2119.7 (3)
O1—C4—N1123.3 (4)C22—C17—C18119.0 (4)
O1—C4—C3124.0 (4)C22—C17—N4120.8 (4)
N1—C4—C3112.6 (4)C18—C17—N4120.3 (4)
N2—C5—N1115.8 (4)F2—C18—C17118.9 (4)
N2—C5—S1124.8 (3)F2—C18—C19118.9 (5)
N1—C5—S1119.4 (3)C17—C18—C19122.2 (5)
C7—C6—C11119.3 (4)C20—C19—C18117.7 (5)
C7—C6—N2120.9 (4)C20—C19—H19121.2
C11—C6—N2119.8 (4)C18—C19—H19121.2
F1—C7—C6119.2 (4)C21—C20—C19121.6 (5)
F1—C7—C8118.6 (5)C21—C20—H20119.2
C6—C7—C8122.2 (5)C19—C20—H20119.2
C9—C8—C7118.2 (5)C20—C21—C22119.4 (5)
C9—C8—H8120.9C20—C21—H21120.3
C7—C8—H8120.9C22—C21—H21120.3
C10—C9—C8120.6 (5)C17—C22—C21120.2 (5)
C10—C9—H9119.7C17—C22—H22119.9
C8—C9—H9119.7C21—C22—H22119.9
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.862.022.691 (5)134
N2—H2···O2i0.862.403.128 (5)143
N4—H4···O20.862.022.676 (5)133
N4—H4···O1ii0.862.323.033 (5)141
N3—H3···S1iii0.862.593.447 (4)176
N1—H1···S2iii0.862.523.364 (4)169
C3—H3A···Cl10.972.763.189 (5)107
C14—H14A···Cl20.972.823.190 (4)103
C14—H14A···S1iii0.972.963.784 (5)143
C14—H14B···S2iv0.972.743.691 (5)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.862.022.691 (5)134
N2—H2⋯O2i0.862.403.128 (5)143
N4—H4⋯O20.862.022.676 (5)133
N4—H4⋯O1ii0.862.323.033 (5)141
N3—H3⋯S1iii0.862.593.447 (4)176
N1—H1⋯S2iii0.862.523.364 (4)169
C14—H14A⋯S1iii0.972.963.784 (5)143
C14—H14B⋯S2iv0.972.743.691 (5)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-butano-yl)-N'-phenyl-thio-urea.

Authors:  Bohari M Yamin; Nur Eliyanti Ali Othman; M Sukeri M Yusof; Farhana Embong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

3.  Structure validation in chemical crystallography.

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  3 in total
  5 in total

1.  N-(4-Chloro-butano-yl)-N'-(2,5-dimeth-oxy-phen-yl)thio-urea.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

2.  1-(4-Chloro-butano-yl)-3-(2-nitro-phen-yl)thio-urea.

Authors:  Nurziana Ngah; Maisara Kadir; Bohari M Yamin; M Sukeri M Yusof
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

3.  1-(4-Chloro-butano-yl)-3-(2-chloro-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nur Farhana Embong; Bohari M Yamin; Nurziana Ngah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

4.  1-(4-Chlorophenyl)-3-(3-chloro-pro-pionyl)thio-urea.

Authors:  Bohari M Yamin; Siti K C Soh; Siti Fairus M Yusoff
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

5.  N-(4-Chloro-butano-yl)-N'-[2-(trifluoro-meth-yl)phen-yl]thio-urea.

Authors:  Mohd Sukeri Mohd Yusof; Nur Farhana Embong; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
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