Literature DB >> 22719574

1-(4-Chloro-butano-yl)-3-(2-nitro-phen-yl)thio-urea.

Nurziana Ngah, Maisara Kadir, Bohari M Yamin, M Sukeri M Yusof.   

Abstract

The asymmetric unit of the title compound, C(11)H(12)ClN(3)O(3)S, contains two independent mol-ecules with different conformations in which the benzene ring and the thio-urea fragment form dihedral angles of 87.28 (12) and 66.44 (10)°. The O atom of the thio-amide group is involved in bifurcated N-H⋯O intra- and inter-molecular hydrogen bonding; the latter inter-action links the independent mol-ecules into a dimer. In the crystal, N-H⋯S inter-actions link the mol-ecules into chains propagating along the c axis.

Entities:  

Year:  2012        PMID: 22719574      PMCID: PMC3379376          DOI: 10.1107/S160053681202168X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Yusof et al. (2011 ▶, 2012) ▶. For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12ClN3O3S M = 301.75 Monoclinic, a = 14.593 (4) Å b = 11.288 (3) Å c = 17.828 (5) Å β = 110.765 (5)° V = 2745.8 (12) Å3 Z = 8 Mo Kα radiation μ = 0.44 mm−1 T = 298 K 0.36 × 0.35 × 0.34 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.859, T max = 0.866 15815 measured reflections 5117 independent reflections 3968 reflections with I > 2/s(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.133 S = 1.03 5117 reflections 343 parameters 18 restraints H-atom parameters constrained Δρmax = 0.73 e Å−3 Δρmin = −0.44 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202168X/bq2354sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202168X/bq2354Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202168X/bq2354Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12ClN3O3SZ = 8
Mr = 301.75F(000) = 1248
Monoclinic, P21/cDx = 1.460 Mg m3
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 14.593 (4) Åθ = 2.1–25.5°
b = 11.288 (3) ŵ = 0.44 mm1
c = 17.828 (5) ÅT = 298 K
β = 110.765 (5)°Block, light yellow
V = 2745.8 (12) Å30.36 × 0.35 × 0.34 mm
Bruker SMART APEX CCD area-detector diffractometer5117 independent reflections
Radiation source: fine-focus sealed tube3968 reflections with I > 2/s(I)
Graphite monochromatorRint = 0.028
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 2.1°
ω scanh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −13→13
Tmin = 0.859, Tmax = 0.866l = −21→15
15815 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0667P)2 + 1.5901P] where P = (Fo2 + 2Fc2)/3
5117 reflections(Δ/σ)max < 0.001
343 parametersΔρmax = 0.73 e Å3
18 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.24412 (6)0.79386 (9)0.71487 (5)0.0756 (3)
Cl20.47919 (7)0.83444 (9)0.03285 (6)0.0889 (3)
S10.76404 (5)0.50753 (6)0.47256 (4)0.0493 (2)
S21.03228 (4)1.01443 (6)0.16703 (4)0.04415 (18)
O10.94192 (14)0.81777 (18)0.43547 (12)0.0606 (6)
O20.5292 (2)0.8151 (3)0.3985 (2)0.1216 (12)
O30.6705 (3)0.8670 (3)0.4071 (2)0.1155 (11)
O40.80541 (12)0.89874 (19)0.27305 (11)0.0522 (5)
O51.1880 (2)1.2063 (2)0.3510 (3)0.1318 (15)
O61.04315 (17)1.16326 (19)0.34087 (16)0.0728 (6)
N10.91463 (14)0.65268 (19)0.49776 (12)0.0413 (5)
H1A0.94040.60880.53940.050*
N20.78153 (14)0.6862 (2)0.38280 (13)0.0455 (5)
H2A0.81310.74650.37500.055*
N30.6020 (2)0.8010 (3)0.38258 (19)0.0722 (8)
N40.85978 (13)0.97251 (17)0.17751 (12)0.0364 (4)
H4A0.83981.00060.12960.044*
N50.99262 (13)0.93177 (18)0.29187 (12)0.0386 (5)
H5A0.95000.91390.31320.046*
N61.12681 (18)1.1360 (2)0.35275 (16)0.0560 (6)
C11.2274 (2)0.8592 (3)0.61931 (19)0.0652 (9)
H1B1.25460.93850.62740.078*
H1C1.26280.81300.59260.078*
C21.12111 (19)0.8653 (3)0.56658 (17)0.0510 (7)
H2B1.11550.90370.51650.061*
H2C1.08610.91320.59270.061*
C31.07414 (17)0.7445 (2)0.54881 (16)0.0448 (6)
H3A1.11430.69380.52900.054*
H3B1.07310.71030.59840.054*
C40.97212 (17)0.7454 (2)0.48887 (15)0.0413 (6)
C50.82146 (17)0.6218 (2)0.44845 (14)0.0382 (5)
C60.68819 (17)0.6588 (2)0.32493 (15)0.0426 (6)
C70.60209 (19)0.7115 (3)0.32442 (17)0.0494 (7)
C80.5123 (2)0.6819 (3)0.2662 (2)0.0657 (9)
H8A0.45480.71670.26670.079*
C90.5099 (2)0.6008 (4)0.2084 (2)0.0735 (10)
H9A0.45040.58160.16880.088*
C100.5934 (2)0.5483 (3)0.2086 (2)0.0709 (9)
H10A0.59070.49290.16930.085*
C110.6824 (2)0.5763 (3)0.26647 (17)0.0572 (7)
H11A0.73910.53910.26600.069*
C120.5051 (2)0.9274 (3)0.11797 (19)0.0635 (8)
H12A0.49641.00950.10070.076*
H12B0.45920.91050.14480.076*
C130.60803 (18)0.9100 (3)0.17614 (16)0.0526 (7)
H13A0.61580.95390.22480.063*
H13B0.61750.82670.19020.063*
C140.68560 (17)0.9485 (2)0.14479 (15)0.0441 (6)
H14A0.67441.03070.12820.053*
H14B0.68040.90160.09790.053*
C150.78730 (17)0.9361 (2)0.20533 (15)0.0387 (5)
C160.96013 (16)0.9697 (2)0.21656 (14)0.0349 (5)
C171.09327 (16)0.9188 (2)0.33935 (14)0.0358 (5)
C181.15787 (17)1.0128 (2)0.36830 (15)0.0384 (5)
C191.25516 (19)0.9937 (3)0.41403 (17)0.0500 (7)
H19A1.29751.05760.43210.060*
C201.2893 (2)0.8798 (3)0.43287 (18)0.0557 (7)
H20A1.35470.86640.46380.067*
C211.2264 (2)0.7864 (3)0.40572 (18)0.0564 (7)
H21A1.24920.70950.41890.068*
C221.12941 (19)0.8053 (2)0.35899 (16)0.0464 (6)
H22A1.08790.74080.34050.056*
U11U22U33U12U13U23
Cl10.0570 (5)0.0986 (7)0.0547 (5)−0.0123 (4)−0.0006 (4)−0.0010 (4)
Cl20.0714 (6)0.0930 (7)0.0774 (6)−0.0241 (5)−0.0043 (5)−0.0185 (5)
S10.0428 (4)0.0587 (4)0.0406 (4)−0.0163 (3)0.0077 (3)0.0052 (3)
S20.0353 (3)0.0575 (4)0.0400 (3)−0.0052 (3)0.0138 (3)0.0014 (3)
O10.0468 (11)0.0608 (12)0.0579 (12)−0.0145 (9)−0.0014 (9)0.0186 (10)
O20.111 (2)0.158 (3)0.120 (3)0.053 (2)0.072 (2)0.018 (2)
O30.124 (3)0.106 (2)0.126 (3)−0.019 (2)0.056 (2)−0.044 (2)
O40.0342 (9)0.0766 (14)0.0419 (10)−0.0042 (9)0.0085 (8)0.0142 (9)
O50.0838 (19)0.0484 (14)0.253 (5)−0.0123 (14)0.047 (2)0.031 (2)
O60.0634 (14)0.0513 (12)0.1023 (18)0.0153 (10)0.0277 (13)−0.0092 (12)
N10.0333 (10)0.0483 (12)0.0363 (11)−0.0070 (9)0.0048 (8)0.0053 (9)
N20.0338 (11)0.0521 (13)0.0433 (12)−0.0100 (9)0.0046 (9)0.0086 (10)
N30.0732 (19)0.0735 (19)0.079 (2)0.0116 (15)0.0388 (17)0.0104 (15)
N40.0310 (10)0.0401 (11)0.0347 (10)0.0000 (8)0.0074 (8)0.0044 (8)
N50.0280 (10)0.0481 (12)0.0373 (11)−0.0027 (8)0.0088 (8)0.0055 (9)
N60.0536 (15)0.0385 (12)0.0713 (16)−0.0029 (11)0.0163 (12)−0.0024 (11)
C10.0432 (16)0.090 (2)0.0577 (18)−0.0242 (15)0.0115 (14)−0.0058 (16)
C20.0436 (15)0.0568 (17)0.0479 (15)−0.0148 (12)0.0104 (12)−0.0011 (13)
C30.0315 (12)0.0504 (15)0.0471 (14)−0.0041 (11)0.0074 (11)−0.0006 (12)
C40.0355 (13)0.0455 (14)0.0397 (13)−0.0043 (11)0.0094 (11)−0.0023 (11)
C50.0321 (12)0.0464 (14)0.0340 (12)−0.0016 (10)0.0091 (10)−0.0034 (10)
C60.0308 (12)0.0524 (15)0.0394 (13)−0.0067 (11)0.0061 (10)0.0086 (11)
C70.0424 (14)0.0545 (16)0.0523 (16)0.0018 (12)0.0181 (12)0.0155 (13)
C80.0303 (14)0.088 (2)0.074 (2)0.0007 (14)0.0128 (14)0.0335 (19)
C90.0416 (17)0.101 (3)0.060 (2)−0.0244 (17)−0.0032 (14)0.0148 (19)
C100.058 (2)0.090 (2)0.0549 (18)−0.0229 (18)0.0081 (15)−0.0102 (17)
C110.0424 (15)0.071 (2)0.0540 (17)−0.0072 (14)0.0116 (13)−0.0057 (15)
C120.0357 (14)0.091 (2)0.0580 (18)−0.0044 (15)0.0101 (13)0.0002 (17)
C130.0335 (13)0.076 (2)0.0444 (15)−0.0032 (13)0.0094 (11)0.0044 (13)
C140.0332 (12)0.0538 (15)0.0413 (14)−0.0008 (11)0.0084 (10)0.0074 (12)
C150.0327 (12)0.0411 (13)0.0395 (13)−0.0021 (10)0.0092 (10)0.0021 (11)
C160.0322 (12)0.0326 (12)0.0372 (13)0.0004 (9)0.0089 (10)−0.0031 (9)
C170.0315 (12)0.0413 (13)0.0336 (12)−0.0008 (10)0.0105 (9)0.0022 (10)
C180.0364 (12)0.0370 (13)0.0403 (13)−0.0001 (10)0.0116 (10)0.0018 (10)
C190.0373 (13)0.0549 (17)0.0518 (16)−0.0089 (12)0.0082 (12)−0.0027 (13)
C200.0358 (14)0.0668 (19)0.0558 (17)0.0091 (13)0.0056 (12)0.0111 (14)
C210.0533 (17)0.0462 (16)0.0656 (18)0.0154 (13)0.0159 (14)0.0118 (14)
C220.0442 (14)0.0384 (14)0.0521 (15)−0.0009 (11)0.0115 (12)0.0001 (11)
Cl1—C11.792 (3)C3—H3A0.9700
Cl2—C121.772 (3)C3—H3B0.9700
S1—C51.675 (3)C6—C111.378 (4)
S2—C161.674 (2)C6—C71.387 (4)
O1—C41.213 (3)C7—C81.393 (4)
O2—N31.205 (4)C8—C91.369 (5)
O3—N31.198 (4)C8—H8A0.9300
O4—C151.216 (3)C9—C101.354 (5)
O5—N61.203 (3)C9—H9A0.9300
O6—N61.203 (3)C10—C111.379 (4)
N1—C51.377 (3)C10—H10A0.9300
N1—C41.385 (3)C11—H11A0.9300
N1—H1A0.8600C12—C131.505 (4)
N2—C51.324 (3)C12—H12A0.9700
N2—C61.421 (3)C12—H12B0.9700
N2—H2A0.8600C13—C141.494 (4)
N3—C71.447 (4)C13—H13A0.9700
N4—C151.380 (3)C13—H13B0.9700
N4—C161.381 (3)C14—C151.500 (3)
N4—H4A0.8600C14—H14A0.9700
N5—C161.326 (3)C14—H14B0.9700
N5—C171.419 (3)C17—C221.382 (3)
N5—H5A0.8600C17—C181.391 (3)
N6—C181.458 (3)C18—C191.381 (4)
C1—C21.503 (4)C19—C201.376 (4)
C1—H1B0.9700C19—H19A0.9300
C1—H1C0.9700C20—C211.369 (4)
C2—C31.508 (4)C20—H20A0.9300
C2—H2B0.9700C21—C221.380 (4)
C2—H2C0.9700C21—H21A0.9300
C3—C41.493 (3)C22—H22A0.9300
C5—N1—C4128.3 (2)C10—C9—C8120.5 (3)
C5—N1—H1A115.9C10—C9—H9A119.7
C4—N1—H1A115.9C8—C9—H9A119.7
C5—N2—C6122.0 (2)C9—C10—C11120.6 (3)
C5—N2—H2A119.0C9—C10—H10A119.7
C6—N2—H2A119.0C11—C10—H10A119.7
O3—N3—O2121.6 (4)C6—C11—C10120.7 (3)
O3—N3—C7118.9 (3)C6—C11—H11A119.7
O2—N3—C7119.1 (3)C10—C11—H11A119.7
C15—N4—C16128.5 (2)C13—C12—Cl2111.7 (2)
C15—N4—H4A115.7C13—C12—H12A109.3
C16—N4—H4A115.7Cl2—C12—H12A109.3
C16—N5—C17124.1 (2)C13—C12—H12B109.3
C16—N5—H5A118.0Cl2—C12—H12B109.3
C17—N5—H5A118.0H12A—C12—H12B107.9
O6—N6—O5122.9 (3)C14—C13—C12114.1 (2)
O6—N6—C18120.3 (2)C14—C13—H13A108.7
O5—N6—C18116.8 (3)C12—C13—H13A108.7
C2—C1—Cl1112.1 (2)C14—C13—H13B108.7
C2—C1—H1B109.2C12—C13—H13B108.7
Cl1—C1—H1B109.2H13A—C13—H13B107.6
C2—C1—H1C109.2C13—C14—C15113.0 (2)
Cl1—C1—H1C109.2C13—C14—H14A109.0
H1B—C1—H1C107.9C15—C14—H14A109.0
C1—C2—C3112.4 (2)C13—C14—H14B109.0
C1—C2—H2B109.1C15—C14—H14B109.0
C3—C2—H2B109.1H14A—C14—H14B107.8
C1—C2—H2C109.1O4—C15—N4122.4 (2)
C3—C2—H2C109.1O4—C15—C14123.9 (2)
H2B—C2—H2C107.9N4—C15—C14113.7 (2)
C4—C3—C2114.1 (2)N5—C16—N4116.9 (2)
C4—C3—H3A108.7N5—C16—S2124.43 (18)
C2—C3—H3A108.7N4—C16—S2118.69 (17)
C4—C3—H3B108.7C22—C17—C18117.7 (2)
C2—C3—H3B108.7C22—C17—N5117.9 (2)
H3A—C3—H3B107.6C18—C17—N5124.4 (2)
O1—C4—N1122.2 (2)C19—C18—C17121.3 (2)
O1—C4—C3124.0 (2)C19—C18—N6116.5 (2)
N1—C4—C3113.8 (2)C17—C18—N6122.2 (2)
N2—C5—N1116.8 (2)C20—C19—C18119.8 (2)
N2—C5—S1123.08 (18)C20—C19—H19A120.1
N1—C5—S1120.11 (18)C18—C19—H19A120.1
C11—C6—C7118.2 (2)C21—C20—C19119.6 (2)
C11—C6—N2118.8 (2)C21—C20—H20A120.2
C7—C6—N2123.0 (3)C19—C20—H20A120.2
C6—C7—C8120.8 (3)C20—C21—C22120.7 (3)
C6—C7—N3121.7 (3)C20—C21—H21A119.7
C8—C7—N3117.5 (3)C22—C21—H21A119.7
C9—C8—C7119.2 (3)C21—C22—C17120.9 (2)
C9—C8—H8A120.4C21—C22—H22A119.6
C7—C8—H8A120.4C17—C22—H22A119.6
Cl1—C1—C2—C3−60.9 (3)Cl2—C12—C13—C1466.4 (3)
C1—C2—C3—C4−173.1 (2)C12—C13—C14—C15177.0 (3)
C5—N1—C4—O14.6 (4)C16—N4—C15—O42.7 (4)
C5—N1—C4—C3−173.4 (2)C16—N4—C15—C14−177.9 (2)
C2—C3—C4—O129.3 (4)C13—C14—C15—O40.0 (4)
C2—C3—C4—N1−152.8 (2)C13—C14—C15—N4−179.4 (2)
C6—N2—C5—N1176.2 (2)C17—N5—C16—N4177.3 (2)
C6—N2—C5—S1−3.7 (4)C17—N5—C16—S2−3.1 (3)
C4—N1—C5—N21.9 (4)C15—N4—C16—N5−2.9 (4)
C4—N1—C5—S1−178.2 (2)C15—N4—C16—S2177.4 (2)
C5—N2—C6—C11−84.7 (3)C16—N5—C17—C22−110.9 (3)
C5—N2—C6—C795.3 (3)C16—N5—C17—C1869.9 (3)
C11—C6—C7—C8−0.1 (4)C22—C17—C18—C191.0 (4)
N2—C6—C7—C8179.8 (2)N5—C17—C18—C19−179.8 (2)
C11—C6—C7—N3−178.6 (3)C22—C17—C18—N6−178.5 (2)
N2—C6—C7—N31.4 (4)N5—C17—C18—N60.7 (4)
O3—N3—C7—C632.9 (5)O6—N6—C18—C19−152.6 (3)
O2—N3—C7—C6−154.8 (3)O5—N6—C18—C1928.9 (4)
O3—N3—C7—C8−145.6 (4)O6—N6—C18—C1727.0 (4)
O2—N3—C7—C826.7 (4)O5—N6—C18—C17−151.6 (3)
C6—C7—C8—C9−0.9 (4)C17—C18—C19—C20−1.1 (4)
N3—C7—C8—C9177.6 (3)N6—C18—C19—C20178.4 (3)
C7—C8—C9—C101.2 (5)C18—C19—C20—C210.3 (4)
C8—C9—C10—C11−0.6 (5)C19—C20—C21—C220.7 (5)
C7—C6—C11—C100.8 (4)C20—C21—C22—C17−0.8 (4)
N2—C6—C11—C10−179.2 (3)C18—C17—C22—C210.0 (4)
C9—C10—C11—C6−0.5 (5)N5—C17—C22—C21−179.3 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.982.647 (3)134
N5—H5A···O40.861.982.658 (3)135
N2—H2A···O40.862.473.192 (3)141
N5—H5A···O10.862.473.178 (3)139
N1—H1A···S2i0.862.603.455 (2)175
N4—H4A···S1ii0.862.623.425 (2)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S2i0.862.603.455 (2)175
N2—H2A⋯O10.861.982.647 (3)134
N2—H2A⋯O40.862.473.192 (3)141
N4—H4A⋯S1ii0.862.623.425 (2)156
N5—H5A⋯O10.862.473.178 (3)139
N5—H5A⋯O40.861.982.658 (3)135

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-butanoyl)-N'-(2-fluoro-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nur Farhana Embong; Eliyanti A Othman; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  1-(4-Chloro-butano-yl)-3-(2-chloro-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nur Farhana Embong; Bohari M Yamin; Nurziana Ngah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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