| Literature DB >> 22058755 |
M Sukeri M Yusof, Norafiqah R Azmi, Bohari M Yamin.
Abstract
The title mol-ecule, C(13)H(17)ClN(2)O(3)S, shows an anti and syn disposition of the butanoyl and 2,5-dimethoxyphenyl groups with respect to the thione and is stabilized by intra-molecular N-H⋯O and weak C-H⋯S hydrogen bonds. In the crystal, inter-molecular N-H⋯S hydrogen bonds link the mol-ecules into centrosymmetric dimers. The crystal structure is stabilized by weak C-H⋯O and C-H⋯S contacts.Entities:
Year: 2011 PMID: 22058755 PMCID: PMC3201256 DOI: 10.1107/S1600536811036002
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H17ClN2O3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 934 reflections | |
| θ = 1.9–27.5° | |
| µ = 0.41 mm−1 | |
| α = 98.536 (5)° | |
| β = 97.787 (5)° | Slab, colourless |
| γ = 101.489 (5)° | 0.29 × 0.25 × 0.19 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 3351 independent reflections |
| Radiation source: fine-focus sealed tube | 2928 reflections with |
| graphite | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 9303 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3351 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| 0 constraints |
| Cl1 | 0.76739 (8) | 0.42437 (6) | 0.51080 (5) | 0.06766 (17) | |
| S1 | 0.35046 (6) | 0.36496 (4) | 1.10956 (4) | 0.04799 (14) | |
| O1 | 0.38199 (19) | 0.05467 (12) | 0.74925 (12) | 0.0523 (3) | |
| O2 | 0.0551 (2) | −0.00809 (15) | 1.36092 (13) | 0.0633 (4) | |
| O3 | 0.23484 (18) | −0.21076 (12) | 0.90512 (12) | 0.0521 (3) | |
| N1 | 0.40933 (18) | 0.27749 (13) | 0.88324 (12) | 0.0393 (3) | |
| H1A | 0.4464 | 0.3739 | 0.8901 | 0.047* | |
| N2 | 0.29315 (17) | 0.07994 (13) | 0.97717 (12) | 0.0379 (3) | |
| H2A | 0.3046 | 0.0287 | 0.9073 | 0.045* | |
| C1 | 0.5613 (3) | 0.2829 (2) | 0.45811 (17) | 0.0549 (4) | |
| H1B | 0.4647 | 0.3319 | 0.4332 | 0.066* | |
| H1C | 0.5743 | 0.2142 | 0.3851 | 0.066* | |
| C2 | 0.5121 (3) | 0.19342 (19) | 0.55845 (15) | 0.0466 (4) | |
| H2B | 0.6092 | 0.1445 | 0.5826 | 0.056* | |
| H2C | 0.4052 | 0.1144 | 0.5235 | 0.056* | |
| C3 | 0.4770 (3) | 0.28733 (18) | 0.67463 (15) | 0.0457 (4) | |
| H3A | 0.5857 | 0.3630 | 0.7127 | 0.055* | |
| H3B | 0.3837 | 0.3401 | 0.6506 | 0.055* | |
| C4 | 0.4193 (2) | 0.19249 (17) | 0.76973 (15) | 0.0388 (3) | |
| C5 | 0.3481 (2) | 0.22955 (16) | 0.98775 (14) | 0.0353 (3) | |
| C6 | 0.2192 (2) | −0.00946 (16) | 1.06058 (14) | 0.0356 (3) | |
| C7 | 0.1739 (2) | 0.04605 (17) | 1.17392 (15) | 0.0414 (3) | |
| H7A | 0.1919 | 0.1500 | 1.2009 | 0.050* | |
| C8 | 0.1013 (2) | −0.05441 (19) | 1.24712 (15) | 0.0435 (4) | |
| C9 | 0.0757 (2) | −0.20879 (19) | 1.20822 (17) | 0.0475 (4) | |
| H9A | 0.0292 | −0.2752 | 1.2584 | 0.057* | |
| C10 | 0.1191 (2) | −0.26447 (18) | 1.09489 (17) | 0.0463 (4) | |
| H10A | 0.1010 | −0.3686 | 1.0688 | 0.056* | |
| C11 | 0.1893 (2) | −0.16674 (17) | 1.01961 (15) | 0.0394 (3) | |
| C12 | 0.0271 (3) | 0.1408 (2) | 1.38725 (18) | 0.0584 (5) | |
| H12A | −0.0043 | 0.1587 | 1.4693 | 0.088* | |
| H12B | −0.0689 | 0.1522 | 1.3260 | 0.088* | |
| H12C | 0.1354 | 0.2125 | 1.3843 | 0.088* | |
| C13 | 0.1689 (3) | −0.36576 (19) | 0.84650 (18) | 0.0540 (4) | |
| H13A | 0.2096 | −0.3825 | 0.7675 | 0.081* | |
| H13B | 0.0396 | −0.3895 | 0.8329 | 0.081* | |
| H13C | 0.2130 | −0.4296 | 0.8997 | 0.081* |
| Cl1 | 0.0734 (3) | 0.0600 (3) | 0.0700 (3) | 0.0030 (2) | 0.0293 (3) | 0.0139 (2) |
| S1 | 0.0672 (3) | 0.0281 (2) | 0.0468 (2) | −0.00080 (17) | 0.0255 (2) | 0.00220 (16) |
| O1 | 0.0760 (8) | 0.0283 (6) | 0.0488 (7) | −0.0001 (5) | 0.0206 (6) | 0.0022 (5) |
| O2 | 0.1019 (11) | 0.0522 (7) | 0.0481 (7) | 0.0223 (7) | 0.0333 (7) | 0.0227 (6) |
| O3 | 0.0739 (8) | 0.0282 (5) | 0.0537 (7) | 0.0013 (5) | 0.0262 (6) | 0.0057 (5) |
| N1 | 0.0517 (8) | 0.0240 (6) | 0.0410 (7) | 0.0006 (5) | 0.0160 (6) | 0.0058 (5) |
| N2 | 0.0488 (7) | 0.0259 (6) | 0.0370 (6) | 0.0008 (5) | 0.0123 (5) | 0.0050 (5) |
| C1 | 0.0685 (12) | 0.0546 (11) | 0.0401 (9) | 0.0094 (9) | 0.0141 (8) | 0.0050 (8) |
| C2 | 0.0597 (10) | 0.0363 (8) | 0.0413 (9) | 0.0074 (7) | 0.0120 (7) | 0.0007 (6) |
| C3 | 0.0657 (11) | 0.0325 (8) | 0.0403 (8) | 0.0090 (7) | 0.0179 (7) | 0.0059 (6) |
| C4 | 0.0438 (8) | 0.0312 (7) | 0.0396 (8) | 0.0029 (6) | 0.0103 (6) | 0.0055 (6) |
| C5 | 0.0372 (7) | 0.0290 (7) | 0.0388 (7) | 0.0027 (6) | 0.0092 (6) | 0.0076 (5) |
| C6 | 0.0370 (7) | 0.0299 (7) | 0.0395 (8) | 0.0027 (6) | 0.0060 (6) | 0.0117 (6) |
| C7 | 0.0515 (9) | 0.0320 (7) | 0.0409 (8) | 0.0056 (6) | 0.0094 (7) | 0.0113 (6) |
| C8 | 0.0517 (9) | 0.0422 (8) | 0.0388 (8) | 0.0086 (7) | 0.0097 (7) | 0.0152 (7) |
| C9 | 0.0557 (10) | 0.0405 (8) | 0.0491 (9) | 0.0047 (7) | 0.0120 (8) | 0.0226 (7) |
| C10 | 0.0565 (10) | 0.0293 (7) | 0.0527 (9) | 0.0031 (7) | 0.0114 (8) | 0.0134 (7) |
| C11 | 0.0426 (8) | 0.0313 (7) | 0.0437 (8) | 0.0035 (6) | 0.0089 (6) | 0.0095 (6) |
| C12 | 0.0805 (13) | 0.0503 (10) | 0.0482 (10) | 0.0129 (9) | 0.0235 (9) | 0.0116 (8) |
| C13 | 0.0685 (12) | 0.0324 (8) | 0.0579 (11) | 0.0048 (8) | 0.0158 (9) | 0.0026 (7) |
| Cl1—C1 | 1.798 (2) | C3—C4 | 1.507 (2) |
| S1—C5 | 1.6750 (16) | C3—H3A | 0.9700 |
| O1—C4 | 1.2156 (19) | C3—H3B | 0.9700 |
| O2—C8 | 1.370 (2) | C6—C7 | 1.385 (2) |
| O2—C12 | 1.415 (2) | C6—C11 | 1.405 (2) |
| O3—C11 | 1.370 (2) | C7—C8 | 1.390 (2) |
| O3—C13 | 1.4267 (19) | C7—H7A | 0.9300 |
| N1—C4 | 1.3839 (19) | C8—C9 | 1.380 (2) |
| N1—C5 | 1.3905 (19) | C9—C10 | 1.378 (3) |
| N1—H1A | 0.8600 | C9—H9A | 0.9300 |
| N2—C5 | 1.3324 (18) | C10—C11 | 1.384 (2) |
| N2—C6 | 1.4149 (18) | C10—H10A | 0.9300 |
| N2—H2A | 0.8600 | C12—H12A | 0.9600 |
| C1—C2 | 1.508 (2) | C12—H12B | 0.9600 |
| C1—H1B | 0.9700 | C12—H12C | 0.9600 |
| C1—H1C | 0.9700 | C13—H13A | 0.9600 |
| C2—C3 | 1.513 (2) | C13—H13B | 0.9600 |
| C2—H2B | 0.9700 | C13—H13C | 0.9600 |
| C2—H2C | 0.9700 | ||
| C8—O2—C12 | 117.89 (13) | N1—C5—S1 | 116.73 (10) |
| C11—O3—C13 | 117.32 (13) | C7—C6—C11 | 119.81 (13) |
| C4—N1—C5 | 129.36 (12) | C7—C6—N2 | 125.40 (13) |
| C4—N1—H1A | 115.3 | C11—C6—N2 | 114.78 (13) |
| C5—N1—H1A | 115.3 | C6—C7—C8 | 119.69 (14) |
| C5—N2—C6 | 131.35 (13) | C6—C7—H7A | 120.2 |
| C5—N2—H2A | 114.3 | C8—C7—H7A | 120.2 |
| C6—N2—H2A | 114.3 | O2—C8—C9 | 116.42 (14) |
| C2—C1—Cl1 | 112.05 (13) | O2—C8—C7 | 123.06 (15) |
| C2—C1—H1B | 109.2 | C9—C8—C7 | 120.50 (15) |
| Cl1—C1—H1B | 109.2 | C10—C9—C8 | 119.96 (15) |
| C2—C1—H1C | 109.2 | C10—C9—H9A | 120.0 |
| Cl1—C1—H1C | 109.2 | C8—C9—H9A | 120.0 |
| H1B—C1—H1C | 107.9 | C9—C10—C11 | 120.59 (15) |
| C1—C2—C3 | 114.17 (14) | C9—C10—H10A | 119.7 |
| C1—C2—H2B | 108.7 | C11—C10—H10A | 119.7 |
| C3—C2—H2B | 108.7 | O3—C11—C10 | 125.02 (14) |
| C1—C2—H2C | 108.7 | O3—C11—C6 | 115.55 (13) |
| C3—C2—H2C | 108.7 | C10—C11—C6 | 119.43 (15) |
| H2B—C2—H2C | 107.6 | O2—C12—H12A | 109.5 |
| C4—C3—C2 | 112.46 (13) | O2—C12—H12B | 109.5 |
| C4—C3—H3A | 109.1 | H12A—C12—H12B | 109.5 |
| C2—C3—H3A | 109.1 | O2—C12—H12C | 109.5 |
| C4—C3—H3B | 109.1 | H12A—C12—H12C | 109.5 |
| C2—C3—H3B | 109.1 | H12B—C12—H12C | 109.5 |
| H3A—C3—H3B | 107.8 | O3—C13—H13A | 109.5 |
| O1—C4—N1 | 122.66 (14) | O3—C13—H13B | 109.5 |
| O1—C4—C3 | 123.84 (14) | H13A—C13—H13B | 109.5 |
| N1—C4—C3 | 113.49 (13) | O3—C13—H13C | 109.5 |
| N2—C5—N1 | 115.06 (13) | H13A—C13—H13C | 109.5 |
| N2—C5—S1 | 128.21 (12) | H13B—C13—H13C | 109.5 |
| H··· | ||||
| N2—H2A···O1 | 0.86 | 1.93 | 2.663 (2) | 141 |
| N2—H2A···O3 | 0.86 | 2.15 | 2.5895 (18) | 112 |
| C7—H7A···S1 | 0.93 | 2.51 | 3.1853 (18) | 129 |
| N1—H1A···S1i | 0.86 | 2.58 | 3.4058 (16) | 161 |
| C3—H3A···S1i | 0.97 | 2.83 | 3.5633 (19) | 133 |
| C12—H12A···O2ii | 0.96 | 2.50 | 3.259 (3) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.93 | 2.663 (2) | 141 |
| C7—H7 | 0.93 | 2.51 | 3.1853 (18) | 129 |
| N1—H1 | 0.86 | 2.58 | 3.4058 (16) | 161 |
| C3—H3 | 0.97 | 2.83 | 3.5633 (19) | 133 |
| C12—H12 | 0.96 | 2.50 | 3.259 (3) | 136 |
Symmetry codes: (i) ; (ii) .