Literature DB >> 22058755

N-(4-Chloro-butano-yl)-N'-(2,5-dimeth-oxy-phen-yl)thio-urea.

M Sukeri M Yusof, Norafiqah R Azmi, Bohari M Yamin.   

Abstract

The title mol-ecule, C(13)H(17)ClN(2)O(3)S, shows an anti and syn disposition of the butanoyl and 2,5-dimethoxyphenyl groups with respect to the thione and is stabilized by intra-molecular N-H⋯O and weak C-H⋯S hydrogen bonds. In the crystal, inter-molecular N-H⋯S hydrogen bonds link the mol-ecules into centrosymmetric dimers. The crystal structure is stabilized by weak C-H⋯O and C-H⋯S contacts.

Entities:  

Year:  2011        PMID: 22058755      PMCID: PMC3201256          DOI: 10.1107/S1600536811036002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of related thio­ureas, see: Yamin et al. (2011 ▶); Yusof et al. (2011 ▶).

Experimental

Crystal data

C13H17ClN2O3S M = 316.80 Triclinic, a = 7.6882 (18) Å b = 9.151 (2) Å c = 10.939 (3) Å α = 98.536 (5)° β = 97.787 (5)° γ = 101.489 (5)° V = 734.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.41 mm−1 T = 298 K 0.29 × 0.25 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.890, T max = 0.926 9303 measured reflections 3351 independent reflections 2928 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.06 3351 reflections 181 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036002/bh2378sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036002/bh2378Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036002/bh2378Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17ClN2O3SZ = 2
Mr = 316.80F(000) = 332
Triclinic, P1Dx = 1.432 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6882 (18) ÅCell parameters from 934 reflections
b = 9.151 (2) Åθ = 1.9–27.5°
c = 10.939 (3) ŵ = 0.41 mm1
α = 98.536 (5)°T = 298 K
β = 97.787 (5)°Slab, colourless
γ = 101.489 (5)°0.29 × 0.25 × 0.19 mm
V = 734.9 (3) Å3
Bruker SMART APEX CCD area-detector diffractometer3351 independent reflections
Radiation source: fine-focus sealed tube2928 reflections with I > 2/s(I)
graphiteRint = 0.018
Detector resolution: 83.66 pixels mm-1θmax = 27.5°, θmin = 1.9°
ω scanh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −11→11
Tmin = 0.890, Tmax = 0.926l = −14→14
9303 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.053P)2 + 0.1878P] where P = (Fo2 + 2Fc2)/3
3351 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.22 e Å3
0 constraints
xyzUiso*/Ueq
Cl10.76739 (8)0.42437 (6)0.51080 (5)0.06766 (17)
S10.35046 (6)0.36496 (4)1.10956 (4)0.04799 (14)
O10.38199 (19)0.05467 (12)0.74925 (12)0.0523 (3)
O20.0551 (2)−0.00809 (15)1.36092 (13)0.0633 (4)
O30.23484 (18)−0.21076 (12)0.90512 (12)0.0521 (3)
N10.40933 (18)0.27749 (13)0.88324 (12)0.0393 (3)
H1A0.44640.37390.89010.047*
N20.29315 (17)0.07994 (13)0.97717 (12)0.0379 (3)
H2A0.30460.02870.90730.045*
C10.5613 (3)0.2829 (2)0.45811 (17)0.0549 (4)
H1B0.46470.33190.43320.066*
H1C0.57430.21420.38510.066*
C20.5121 (3)0.19342 (19)0.55845 (15)0.0466 (4)
H2B0.60920.14450.58260.056*
H2C0.40520.11440.52350.056*
C30.4770 (3)0.28733 (18)0.67463 (15)0.0457 (4)
H3A0.58570.36300.71270.055*
H3B0.38370.34010.65060.055*
C40.4193 (2)0.19249 (17)0.76973 (15)0.0388 (3)
C50.3481 (2)0.22955 (16)0.98775 (14)0.0353 (3)
C60.2192 (2)−0.00946 (16)1.06058 (14)0.0356 (3)
C70.1739 (2)0.04605 (17)1.17392 (15)0.0414 (3)
H7A0.19190.15001.20090.050*
C80.1013 (2)−0.05441 (19)1.24712 (15)0.0435 (4)
C90.0757 (2)−0.20879 (19)1.20822 (17)0.0475 (4)
H9A0.0292−0.27521.25840.057*
C100.1191 (2)−0.26447 (18)1.09489 (17)0.0463 (4)
H10A0.1010−0.36861.06880.056*
C110.1893 (2)−0.16674 (17)1.01961 (15)0.0394 (3)
C120.0271 (3)0.1408 (2)1.38725 (18)0.0584 (5)
H12A−0.00430.15871.46930.088*
H12B−0.06890.15221.32600.088*
H12C0.13540.21251.38430.088*
C130.1689 (3)−0.36576 (19)0.84650 (18)0.0540 (4)
H13A0.2096−0.38250.76750.081*
H13B0.0396−0.38950.83290.081*
H13C0.2130−0.42960.89970.081*
U11U22U33U12U13U23
Cl10.0734 (3)0.0600 (3)0.0700 (3)0.0030 (2)0.0293 (3)0.0139 (2)
S10.0672 (3)0.0281 (2)0.0468 (2)−0.00080 (17)0.0255 (2)0.00220 (16)
O10.0760 (8)0.0283 (6)0.0488 (7)−0.0001 (5)0.0206 (6)0.0022 (5)
O20.1019 (11)0.0522 (7)0.0481 (7)0.0223 (7)0.0333 (7)0.0227 (6)
O30.0739 (8)0.0282 (5)0.0537 (7)0.0013 (5)0.0262 (6)0.0057 (5)
N10.0517 (8)0.0240 (6)0.0410 (7)0.0006 (5)0.0160 (6)0.0058 (5)
N20.0488 (7)0.0259 (6)0.0370 (6)0.0008 (5)0.0123 (5)0.0050 (5)
C10.0685 (12)0.0546 (11)0.0401 (9)0.0094 (9)0.0141 (8)0.0050 (8)
C20.0597 (10)0.0363 (8)0.0413 (9)0.0074 (7)0.0120 (7)0.0007 (6)
C30.0657 (11)0.0325 (8)0.0403 (8)0.0090 (7)0.0179 (7)0.0059 (6)
C40.0438 (8)0.0312 (7)0.0396 (8)0.0029 (6)0.0103 (6)0.0055 (6)
C50.0372 (7)0.0290 (7)0.0388 (7)0.0027 (6)0.0092 (6)0.0076 (5)
C60.0370 (7)0.0299 (7)0.0395 (8)0.0027 (6)0.0060 (6)0.0117 (6)
C70.0515 (9)0.0320 (7)0.0409 (8)0.0056 (6)0.0094 (7)0.0113 (6)
C80.0517 (9)0.0422 (8)0.0388 (8)0.0086 (7)0.0097 (7)0.0152 (7)
C90.0557 (10)0.0405 (8)0.0491 (9)0.0047 (7)0.0120 (8)0.0226 (7)
C100.0565 (10)0.0293 (7)0.0527 (9)0.0031 (7)0.0114 (8)0.0134 (7)
C110.0426 (8)0.0313 (7)0.0437 (8)0.0035 (6)0.0089 (6)0.0095 (6)
C120.0805 (13)0.0503 (10)0.0482 (10)0.0129 (9)0.0235 (9)0.0116 (8)
C130.0685 (12)0.0324 (8)0.0579 (11)0.0048 (8)0.0158 (9)0.0026 (7)
Cl1—C11.798 (2)C3—C41.507 (2)
S1—C51.6750 (16)C3—H3A0.9700
O1—C41.2156 (19)C3—H3B0.9700
O2—C81.370 (2)C6—C71.385 (2)
O2—C121.415 (2)C6—C111.405 (2)
O3—C111.370 (2)C7—C81.390 (2)
O3—C131.4267 (19)C7—H7A0.9300
N1—C41.3839 (19)C8—C91.380 (2)
N1—C51.3905 (19)C9—C101.378 (3)
N1—H1A0.8600C9—H9A0.9300
N2—C51.3324 (18)C10—C111.384 (2)
N2—C61.4149 (18)C10—H10A0.9300
N2—H2A0.8600C12—H12A0.9600
C1—C21.508 (2)C12—H12B0.9600
C1—H1B0.9700C12—H12C0.9600
C1—H1C0.9700C13—H13A0.9600
C2—C31.513 (2)C13—H13B0.9600
C2—H2B0.9700C13—H13C0.9600
C2—H2C0.9700
C8—O2—C12117.89 (13)N1—C5—S1116.73 (10)
C11—O3—C13117.32 (13)C7—C6—C11119.81 (13)
C4—N1—C5129.36 (12)C7—C6—N2125.40 (13)
C4—N1—H1A115.3C11—C6—N2114.78 (13)
C5—N1—H1A115.3C6—C7—C8119.69 (14)
C5—N2—C6131.35 (13)C6—C7—H7A120.2
C5—N2—H2A114.3C8—C7—H7A120.2
C6—N2—H2A114.3O2—C8—C9116.42 (14)
C2—C1—Cl1112.05 (13)O2—C8—C7123.06 (15)
C2—C1—H1B109.2C9—C8—C7120.50 (15)
Cl1—C1—H1B109.2C10—C9—C8119.96 (15)
C2—C1—H1C109.2C10—C9—H9A120.0
Cl1—C1—H1C109.2C8—C9—H9A120.0
H1B—C1—H1C107.9C9—C10—C11120.59 (15)
C1—C2—C3114.17 (14)C9—C10—H10A119.7
C1—C2—H2B108.7C11—C10—H10A119.7
C3—C2—H2B108.7O3—C11—C10125.02 (14)
C1—C2—H2C108.7O3—C11—C6115.55 (13)
C3—C2—H2C108.7C10—C11—C6119.43 (15)
H2B—C2—H2C107.6O2—C12—H12A109.5
C4—C3—C2112.46 (13)O2—C12—H12B109.5
C4—C3—H3A109.1H12A—C12—H12B109.5
C2—C3—H3A109.1O2—C12—H12C109.5
C4—C3—H3B109.1H12A—C12—H12C109.5
C2—C3—H3B109.1H12B—C12—H12C109.5
H3A—C3—H3B107.8O3—C13—H13A109.5
O1—C4—N1122.66 (14)O3—C13—H13B109.5
O1—C4—C3123.84 (14)H13A—C13—H13B109.5
N1—C4—C3113.49 (13)O3—C13—H13C109.5
N2—C5—N1115.06 (13)H13A—C13—H13C109.5
N2—C5—S1128.21 (12)H13B—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.932.663 (2)141
N2—H2A···O30.862.152.5895 (18)112
C7—H7A···S10.932.513.1853 (18)129
N1—H1A···S1i0.862.583.4058 (16)161
C3—H3A···S1i0.972.833.5633 (19)133
C12—H12A···O2ii0.962.503.259 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.932.663 (2)141
C7—H7A⋯S10.932.513.1853 (18)129
N1—H1A⋯S1i0.862.583.4058 (16)161
C3—H3A⋯S1i0.972.833.5633 (19)133
C12—H12A⋯O2ii0.962.503.259 (3)136

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-butano-yl)-N'-phenyl-thio-urea.

Authors:  Bohari M Yamin; Nur Eliyanti Ali Othman; M Sukeri M Yusof; Farhana Embong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

3.  N-(4-Chloro-butanoyl)-N'-(2-fluoro-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nur Farhana Embong; Eliyanti A Othman; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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