| Literature DB >> 21523089 |
Bohari M Yamin, Nur Eliyanti Ali Othman, M Sukeri M Yusof, Farhana Embong.
Abstract
The asymmetric unit of the title compound, C(11)H(13)ClN(2)OS, contains two independent mol-ecules. Both mol-ecules maintain a trans-cis configuration with respect to the position of the carbonyl group and the benzene ring against the thione group across the C-N bonds. The mol-ecules are stabilized by intra-molecular N-H⋯O hydrogen bonds. In the crystal, the mol-ecules are linked by inter-molecular N-H⋯S, N-H⋯O and C-H⋯S hydrogen bonds into chains along the c axis. C-H⋯π inter-actions further stabilize the crystal structure.Entities:
Year: 2011 PMID: 21523089 PMCID: PMC3051517 DOI: 10.1107/S1600536811001498
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13ClN2OS | |
| Monoclinic, | Melting point = 392.3–393.2 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 3372 reflections | |
| θ = 2.3–25.5° | |
| µ = 0.45 mm−1 | |
| β = 112.408 (4)° | |
| Slab, colourless | |
| 0.50 × 0.49 × 0.09 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 4706 independent reflections |
| Radiation source: fine-focus sealed tube | 3195 reflections with |
| graphite | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 25.5°, θmin = 2.3° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 14531 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4706 reflections | (Δ/σ)max < 0.001 |
| 289 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.49537 (8) | 0.21955 (15) | 0.48980 (7) | 0.1177 (5) | |
| Cl2 | −0.21432 (6) | 0.81829 (9) | −0.21567 (5) | 0.0734 (3) | |
| S1 | 1.01893 (5) | −0.02943 (8) | 0.66961 (4) | 0.0505 (2) | |
| S2 | 0.24956 (5) | 0.47421 (8) | 0.02400 (4) | 0.0479 (2) | |
| O1 | 0.79636 (14) | 0.1555 (2) | 0.75863 (12) | 0.0602 (6) | |
| O2 | 0.07429 (14) | 0.80422 (18) | 0.07521 (11) | 0.0540 (5) | |
| N1 | 0.84965 (15) | 0.0558 (2) | 0.67035 (12) | 0.0433 (5) | |
| H1 | 0.8298 | 0.0332 | 0.6213 | 0.052* | |
| N2 | 0.98310 (15) | 0.0728 (2) | 0.79027 (12) | 0.0444 (6) | |
| H2 | 0.9429 | 0.1100 | 0.8080 | 0.053* | |
| N3 | 0.09962 (14) | 0.6311 (2) | 0.00710 (12) | 0.0411 (5) | |
| H3 | 0.0729 | 0.5877 | −0.0363 | 0.049* | |
| N4 | 0.23236 (15) | 0.6444 (2) | 0.12761 (13) | 0.0457 (6) | |
| H4 | 0.2007 | 0.7065 | 0.1393 | 0.055* | |
| C1 | 0.4980 (2) | 0.1639 (4) | 0.5816 (2) | 0.0839 (12) | |
| H1A | 0.4521 | 0.2154 | 0.5966 | 0.101* | |
| H1B | 0.4756 | 0.0739 | 0.5760 | 0.101* | |
| C2 | 0.5993 (2) | 0.1718 (4) | 0.6469 (2) | 0.0709 (10) | |
| H2A | 0.6214 | 0.2619 | 0.6528 | 0.085* | |
| H2B | 0.5946 | 0.1452 | 0.6965 | 0.085* | |
| C3 | 0.67435 (19) | 0.0891 (3) | 0.63244 (17) | 0.0539 (8) | |
| H3A | 0.6747 | 0.1104 | 0.5807 | 0.065* | |
| H3B | 0.6551 | −0.0017 | 0.6313 | 0.065* | |
| C4 | 0.77790 (19) | 0.1056 (3) | 0.69406 (16) | 0.0449 (7) | |
| C5 | 0.94940 (18) | 0.0371 (2) | 0.71449 (15) | 0.0394 (6) | |
| C6 | 1.08327 (18) | 0.0522 (3) | 0.84386 (15) | 0.0415 (6) | |
| C7 | 1.1446 (2) | 0.1570 (3) | 0.87086 (18) | 0.0564 (8) | |
| H7 | 1.1220 | 0.2408 | 0.8538 | 0.068* | |
| C8 | 1.2406 (2) | 0.1375 (4) | 0.9236 (2) | 0.0721 (10) | |
| H8 | 1.2827 | 0.2087 | 0.9423 | 0.087* | |
| C9 | 1.2743 (2) | 0.0148 (4) | 0.9486 (2) | 0.0752 (11) | |
| H9 | 1.3394 | 0.0026 | 0.9836 | 0.090* | |
| C10 | 1.2127 (2) | −0.0904 (4) | 0.9225 (2) | 0.0722 (10) | |
| H10 | 1.2355 | −0.1738 | 0.9404 | 0.087* | |
| C11 | 1.1162 (2) | −0.0724 (3) | 0.86907 (18) | 0.0570 (8) | |
| H11 | 1.0741 | −0.1436 | 0.8505 | 0.068* | |
| C12 | −0.2044 (2) | 0.8804 (3) | −0.12092 (18) | 0.0609 (8) | |
| H12A | −0.2282 | 0.9697 | −0.1271 | 0.073* | |
| H12B | −0.2462 | 0.8291 | −0.1015 | 0.073* | |
| C13 | −0.09988 (19) | 0.8768 (3) | −0.06106 (17) | 0.0489 (7) | |
| H13A | −0.0978 | 0.9152 | −0.0118 | 0.059* | |
| H13B | −0.0583 | 0.9291 | −0.0803 | 0.059* | |
| C14 | −0.05878 (19) | 0.7394 (3) | −0.04492 (18) | 0.0488 (7) | |
| H14A | −0.1029 | 0.6861 | −0.0290 | 0.059* | |
| H14B | −0.0576 | 0.7031 | −0.0937 | 0.059* | |
| C15 | 0.04357 (19) | 0.7319 (3) | 0.01824 (16) | 0.0418 (6) | |
| C16 | 0.19336 (17) | 0.5905 (3) | 0.05662 (15) | 0.0382 (6) | |
| C17 | 0.32572 (19) | 0.6032 (3) | 0.18617 (16) | 0.0446 (7) | |
| C18 | 0.4123 (2) | 0.6520 (3) | 0.18414 (19) | 0.0616 (8) | |
| H18 | 0.4111 | 0.7105 | 0.1448 | 0.074* | |
| C19 | 0.5016 (2) | 0.6125 (4) | 0.2418 (2) | 0.0790 (11) | |
| H19 | 0.5608 | 0.6449 | 0.2413 | 0.095* | |
| C20 | 0.5028 (3) | 0.5265 (4) | 0.2990 (2) | 0.0837 (12) | |
| H20 | 0.5629 | 0.5004 | 0.3375 | 0.100* | |
| C21 | 0.4155 (3) | 0.4778 (4) | 0.3003 (2) | 0.0798 (11) | |
| H21 | 0.4168 | 0.4189 | 0.3395 | 0.096* | |
| C22 | 0.3259 (2) | 0.5167 (3) | 0.2432 (2) | 0.0610 (8) | |
| H22 | 0.2666 | 0.4843 | 0.2437 | 0.073* |
| Cl1 | 0.0732 (7) | 0.1601 (12) | 0.0867 (8) | 0.0387 (7) | −0.0065 (6) | 0.0182 (8) |
| Cl2 | 0.0749 (6) | 0.0718 (6) | 0.0519 (5) | −0.0005 (4) | −0.0002 (4) | 0.0018 (4) |
| S1 | 0.0404 (4) | 0.0708 (5) | 0.0381 (4) | 0.0070 (3) | 0.0125 (3) | −0.0009 (3) |
| S2 | 0.0404 (4) | 0.0594 (5) | 0.0391 (4) | 0.0100 (3) | 0.0101 (3) | −0.0034 (3) |
| O1 | 0.0449 (11) | 0.0779 (14) | 0.0470 (13) | 0.0125 (10) | 0.0053 (9) | −0.0161 (11) |
| O2 | 0.0520 (12) | 0.0504 (12) | 0.0459 (12) | 0.0108 (9) | 0.0031 (9) | −0.0066 (10) |
| N1 | 0.0356 (12) | 0.0581 (14) | 0.0299 (11) | 0.0061 (10) | 0.0054 (9) | −0.0013 (10) |
| N2 | 0.0354 (12) | 0.0555 (14) | 0.0364 (13) | 0.0069 (10) | 0.0071 (10) | −0.0072 (11) |
| N3 | 0.0345 (11) | 0.0463 (13) | 0.0336 (12) | 0.0036 (10) | 0.0031 (9) | −0.0036 (10) |
| N4 | 0.0383 (12) | 0.0511 (13) | 0.0381 (13) | 0.0097 (10) | 0.0039 (10) | −0.0053 (11) |
| C1 | 0.0357 (17) | 0.118 (3) | 0.091 (3) | −0.0003 (19) | 0.0159 (17) | −0.035 (2) |
| C2 | 0.0382 (16) | 0.105 (3) | 0.062 (2) | 0.0053 (17) | 0.0103 (15) | −0.021 (2) |
| C3 | 0.0397 (15) | 0.068 (2) | 0.0451 (17) | 0.0045 (14) | 0.0066 (13) | −0.0058 (15) |
| C4 | 0.0390 (14) | 0.0520 (17) | 0.0382 (16) | 0.0057 (13) | 0.0084 (12) | −0.0012 (13) |
| C5 | 0.0374 (14) | 0.0400 (14) | 0.0369 (15) | −0.0003 (11) | 0.0098 (11) | 0.0044 (12) |
| C6 | 0.0345 (14) | 0.0529 (17) | 0.0332 (14) | 0.0032 (12) | 0.0086 (11) | −0.0041 (12) |
| C7 | 0.0450 (16) | 0.0573 (19) | 0.060 (2) | −0.0001 (14) | 0.0126 (15) | −0.0051 (15) |
| C8 | 0.0425 (18) | 0.088 (3) | 0.073 (2) | −0.0110 (18) | 0.0077 (16) | −0.019 (2) |
| C9 | 0.0387 (17) | 0.114 (3) | 0.055 (2) | 0.016 (2) | −0.0019 (15) | −0.011 (2) |
| C10 | 0.063 (2) | 0.079 (2) | 0.059 (2) | 0.028 (2) | 0.0061 (17) | 0.0068 (19) |
| C11 | 0.0519 (18) | 0.0562 (18) | 0.0532 (19) | 0.0038 (15) | 0.0093 (14) | −0.0026 (15) |
| C12 | 0.0498 (17) | 0.068 (2) | 0.056 (2) | 0.0158 (15) | 0.0109 (15) | 0.0062 (16) |
| C13 | 0.0448 (15) | 0.0491 (17) | 0.0470 (17) | 0.0048 (13) | 0.0110 (13) | −0.0001 (13) |
| C14 | 0.0381 (15) | 0.0448 (16) | 0.0534 (18) | 0.0024 (12) | 0.0061 (13) | 0.0022 (13) |
| C15 | 0.0399 (14) | 0.0410 (15) | 0.0404 (16) | 0.0015 (12) | 0.0106 (12) | 0.0044 (13) |
| C16 | 0.0349 (13) | 0.0425 (15) | 0.0356 (14) | −0.0009 (11) | 0.0116 (11) | 0.0033 (12) |
| C17 | 0.0398 (15) | 0.0471 (16) | 0.0371 (15) | 0.0030 (12) | 0.0038 (12) | −0.0082 (13) |
| C18 | 0.0460 (17) | 0.078 (2) | 0.0545 (19) | −0.0024 (16) | 0.0128 (15) | −0.0066 (17) |
| C19 | 0.0416 (18) | 0.112 (3) | 0.073 (3) | −0.0035 (19) | 0.0094 (17) | −0.021 (2) |
| C20 | 0.054 (2) | 0.094 (3) | 0.073 (3) | 0.025 (2) | −0.0097 (19) | −0.011 (2) |
| C21 | 0.081 (3) | 0.067 (2) | 0.064 (2) | 0.017 (2) | −0.002 (2) | 0.0118 (18) |
| C22 | 0.0537 (18) | 0.0553 (19) | 0.061 (2) | 0.0008 (15) | 0.0074 (16) | 0.0025 (16) |
| Cl1—C1 | 1.755 (4) | C7—C8 | 1.379 (4) |
| Cl2—C12 | 1.794 (3) | C7—H7 | 0.9300 |
| S1—C5 | 1.673 (3) | C8—C9 | 1.363 (5) |
| S2—C16 | 1.679 (3) | C8—H8 | 0.9300 |
| O1—C4 | 1.216 (3) | C9—C10 | 1.368 (5) |
| O2—C15 | 1.214 (3) | C9—H9 | 0.9300 |
| N1—C4 | 1.375 (3) | C10—C11 | 1.387 (4) |
| N1—C5 | 1.383 (3) | C10—H10 | 0.9300 |
| N1—H1 | 0.8600 | C11—H11 | 0.9300 |
| N2—C5 | 1.329 (3) | C12—C13 | 1.501 (4) |
| N2—C6 | 1.432 (3) | C12—H12A | 0.9700 |
| N2—H2 | 0.8600 | C12—H12B | 0.9700 |
| N3—C15 | 1.381 (3) | C13—C14 | 1.514 (4) |
| N3—C16 | 1.386 (3) | C13—H13A | 0.9700 |
| N3—H3 | 0.8600 | C13—H13B | 0.9700 |
| N4—C16 | 1.320 (3) | C14—C15 | 1.502 (4) |
| N4—C17 | 1.438 (3) | C14—H14A | 0.9700 |
| N4—H4 | 0.8600 | C14—H14B | 0.9700 |
| C1—C2 | 1.507 (4) | C17—C22 | 1.366 (4) |
| C1—H1A | 0.9700 | C17—C18 | 1.374 (4) |
| C1—H1B | 0.9700 | C18—C19 | 1.387 (5) |
| C2—C3 | 1.487 (4) | C18—H18 | 0.9300 |
| C2—H2A | 0.9700 | C19—C20 | 1.360 (6) |
| C2—H2B | 0.9700 | C19—H19 | 0.9300 |
| C3—C4 | 1.511 (4) | C20—C21 | 1.378 (6) |
| C3—H3A | 0.9700 | C20—H20 | 0.9300 |
| C3—H3B | 0.9700 | C21—C22 | 1.385 (4) |
| C6—C7 | 1.365 (4) | C21—H21 | 0.9300 |
| C6—C11 | 1.380 (4) | C22—H22 | 0.9300 |
| C4—N1—C5 | 129.0 (2) | C9—C10—C11 | 119.8 (3) |
| C4—N1—H1 | 115.5 | C9—C10—H10 | 120.1 |
| C5—N1—H1 | 115.5 | C11—C10—H10 | 120.1 |
| C5—N2—C6 | 123.1 (2) | C6—C11—C10 | 119.3 (3) |
| C5—N2—H2 | 118.5 | C6—C11—H11 | 120.4 |
| C6—N2—H2 | 118.5 | C10—C11—H11 | 120.4 |
| C15—N3—C16 | 128.5 (2) | C13—C12—Cl2 | 112.2 (2) |
| C15—N3—H3 | 115.7 | C13—C12—H12A | 109.2 |
| C16—N3—H3 | 115.7 | Cl2—C12—H12A | 109.2 |
| C16—N4—C17 | 122.5 (2) | C13—C12—H12B | 109.2 |
| C16—N4—H4 | 118.7 | Cl2—C12—H12B | 109.2 |
| C17—N4—H4 | 118.7 | H12A—C12—H12B | 107.9 |
| C2—C1—Cl1 | 113.2 (3) | C12—C13—C14 | 112.5 (2) |
| C2—C1—H1A | 108.9 | C12—C13—H13A | 109.1 |
| Cl1—C1—H1A | 108.9 | C14—C13—H13A | 109.1 |
| C2—C1—H1B | 108.9 | C12—C13—H13B | 109.1 |
| Cl1—C1—H1B | 108.9 | C14—C13—H13B | 109.1 |
| H1A—C1—H1B | 107.8 | H13A—C13—H13B | 107.8 |
| C3—C2—C1 | 113.4 (3) | C15—C14—C13 | 113.7 (2) |
| C3—C2—H2A | 108.9 | C15—C14—H14A | 108.8 |
| C1—C2—H2A | 108.9 | C13—C14—H14A | 108.8 |
| C3—C2—H2B | 108.9 | C15—C14—H14B | 108.8 |
| C1—C2—H2B | 108.9 | C13—C14—H14B | 108.8 |
| H2A—C2—H2B | 107.7 | H14A—C14—H14B | 107.7 |
| C2—C3—C4 | 113.7 (2) | O2—C15—N3 | 122.4 (2) |
| C2—C3—H3A | 108.8 | O2—C15—C14 | 124.1 (2) |
| C4—C3—H3A | 108.8 | N3—C15—C14 | 113.5 (2) |
| C2—C3—H3B | 108.8 | N4—C16—N3 | 117.6 (2) |
| C4—C3—H3B | 108.8 | N4—C16—S2 | 123.88 (19) |
| H3A—C3—H3B | 107.7 | N3—C16—S2 | 118.51 (19) |
| O1—C4—N1 | 123.1 (2) | C22—C17—C18 | 121.5 (3) |
| O1—C4—C3 | 123.8 (2) | C22—C17—N4 | 118.8 (3) |
| N1—C4—C3 | 113.1 (2) | C18—C17—N4 | 119.7 (3) |
| N2—C5—N1 | 117.2 (2) | C17—C18—C19 | 118.9 (3) |
| N2—C5—S1 | 124.53 (19) | C17—C18—H18 | 120.6 |
| N1—C5—S1 | 118.25 (19) | C19—C18—H18 | 120.6 |
| C7—C6—C11 | 120.7 (3) | C20—C19—C18 | 120.3 (3) |
| C7—C6—N2 | 119.3 (2) | C20—C19—H19 | 119.9 |
| C11—C6—N2 | 120.0 (2) | C18—C19—H19 | 119.9 |
| C6—C7—C8 | 119.4 (3) | C19—C20—C21 | 120.4 (3) |
| C6—C7—H7 | 120.3 | C19—C20—H20 | 119.8 |
| C8—C7—H7 | 120.3 | C21—C20—H20 | 119.8 |
| C9—C8—C7 | 120.5 (3) | C20—C21—C22 | 120.0 (4) |
| C9—C8—H8 | 119.7 | C20—C21—H21 | 120.0 |
| C7—C8—H8 | 119.7 | C22—C21—H21 | 120.0 |
| C8—C9—C10 | 120.3 (3) | C17—C22—C21 | 119.0 (3) |
| C8—C9—H9 | 119.9 | C17—C22—H22 | 120.5 |
| C10—C9—H9 | 119.9 | C21—C22—H22 | 120.5 |
| Cl1—C1—C2—C3 | −62.3 (4) | Cl2—C12—C13—C14 | −61.6 (3) |
| C1—C2—C3—C4 | 175.0 (3) | C12—C13—C14—C15 | −176.6 (3) |
| C5—N1—C4—O1 | 8.8 (5) | C16—N3—C15—O2 | 3.3 (4) |
| C5—N1—C4—C3 | −170.0 (3) | C16—N3—C15—C14 | −174.7 (2) |
| C2—C3—C4—O1 | 16.7 (5) | C13—C14—C15—O2 | 33.0 (4) |
| C2—C3—C4—N1 | −164.5 (3) | C13—C14—C15—N3 | −149.0 (2) |
| C6—N2—C5—N1 | 176.3 (2) | C17—N4—C16—N3 | 175.2 (2) |
| C6—N2—C5—S1 | −3.1 (4) | C17—N4—C16—S2 | −3.5 (4) |
| C4—N1—C5—N2 | −1.0 (4) | C15—N3—C16—N4 | 7.5 (4) |
| C4—N1—C5—S1 | 178.5 (2) | C15—N3—C16—S2 | −173.7 (2) |
| C5—N2—C6—C7 | 110.5 (3) | C16—N4—C17—C22 | −97.0 (3) |
| C5—N2—C6—C11 | −71.0 (4) | C16—N4—C17—C18 | 83.5 (3) |
| C11—C6—C7—C8 | 0.3 (5) | C22—C17—C18—C19 | −0.4 (5) |
| N2—C6—C7—C8 | 178.8 (3) | N4—C17—C18—C19 | 179.1 (3) |
| C6—C7—C8—C9 | 0.2 (5) | C17—C18—C19—C20 | 0.3 (5) |
| C7—C8—C9—C10 | −1.0 (6) | C18—C19—C20—C21 | 0.0 (6) |
| C8—C9—C10—C11 | 1.3 (6) | C19—C20—C21—C22 | −0.1 (6) |
| C7—C6—C11—C10 | 0.1 (5) | C18—C17—C22—C21 | 0.2 (5) |
| N2—C6—C11—C10 | −178.5 (3) | N4—C17—C22—C21 | −179.3 (3) |
| C9—C10—C11—C6 | −0.8 (5) | C20—C21—C22—C17 | 0.0 (5) |
| Cg1 and Cg2 are the centroids of the C17–C22 and C6–C11 rings, respectively. |
| H··· | ||||
| N2—H2···O1 | 0.86 | 2.04 | 2.701 (3) | 134 |
| N4—H4···O2 | 0.86 | 2.03 | 2.692 (3) | 133 |
| C3—H3A···Cl1 | 0.97 | 2.75 | 3.194 (3) | 109 |
| C14—H14B···Cl2 | 0.97 | 2.77 | 3.180 (3) | 106 |
| N1—H1···S2i | 0.86 | 2.53 | 3.382 (2) | 173 |
| N2—H2···O2ii | 0.86 | 2.40 | 3.142 (3) | 144 |
| N3—H3···S1iii | 0.86 | 2.58 | 3.439 (2) | 175 |
| N4—H4···O1ii | 0.86 | 2.32 | 3.057 (3) | 143 |
| C14—H14A···S2iv | 0.97 | 2.73 | 3.676 (3) | 166 |
| C2—H2A···Cg2ii | 0.97 | 2.80 | 3.419 (4) | 123 |
| C13—H13A···Cg1ii | 0.97 | 2.83 | 3.417 (3) | 153 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C17–C22 and C6–C11 rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 2.04 | 2.701 (3) | 134 |
| N4—H4⋯O2 | 0.86 | 2.03 | 2.692 (3) | 133 |
| N1—H1⋯S2i | 0.86 | 2.53 | 3.382 (2) | 173 |
| N2—H2⋯O2ii | 0.86 | 2.40 | 3.142 (3) | 144 |
| N3—H3⋯S1iii | 0.86 | 2.58 | 3.439 (2) | 175 |
| N4—H4⋯O1ii | 0.86 | 2.32 | 3.057 (3) | 143 |
| C14—H14 | 0.97 | 2.73 | 3.676 (3) | 166 |
| C2—H2 | 0.97 | 2.80 | 3.419 (4) | 123 |
| C13—H13 | 0.97 | 2.83 | 3.417 (3) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .