Literature DB >> 21523089

N-(4-Chloro-butano-yl)-N'-phenyl-thio-urea.

Bohari M Yamin, Nur Eliyanti Ali Othman, M Sukeri M Yusof, Farhana Embong.   

Abstract

The asymmetric unit of the title compound, C(11)H(13)ClN(2)OS, contains two independent mol-ecules. Both mol-ecules maintain a trans-cis configuration with respect to the position of the carbonyl group and the benzene ring against the thione group across the C-N bonds. The mol-ecules are stabilized by intra-molecular N-H⋯O hydrogen bonds. In the crystal, the mol-ecules are linked by inter-molecular N-H⋯S, N-H⋯O and C-H⋯S hydrogen bonds into chains along the c axis. C-H⋯π inter-actions further stabilize the crystal structure.

Entities:  

Year:  2011        PMID: 21523089      PMCID: PMC3051517          DOI: 10.1107/S1600536811001498

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of thiourea derivatives, see; Sun et al. (2006 ▶); Figueiredo et al. (2006 ▶). For a related structure, see: Othman et al. (2010 ▶); For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H13ClN2OS M = 256.74 Monoclinic, a = 14.610 (3) Å b = 10.244 (2) Å c = 18.230 (4) Å β = 112.408 (4)° V = 2522.5 (9) Å3 Z = 8 Mo Kα radiation μ = 0.45 mm−1 T = 298 K 0.50 × 0.49 × 0.09 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.807, T max = 0.961 14531 measured reflections 4706 independent reflections 3195 reflections with I > 2/s(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.02 4706 reflections 289 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001498/hg2783sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001498/hg2783Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13ClN2OSF(000) = 1072
Mr = 256.74Dx = 1.352 Mg m3
Monoclinic, P21/cMelting point = 392.3–393.2 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 14.610 (3) ÅCell parameters from 3372 reflections
b = 10.244 (2) Åθ = 2.3–25.5°
c = 18.230 (4) ŵ = 0.45 mm1
β = 112.408 (4)°T = 298 K
V = 2522.5 (9) Å3Slab, colourless
Z = 80.50 × 0.49 × 0.09 mm
Bruker SMART APEX CCD area-detector diffractometer4706 independent reflections
Radiation source: fine-focus sealed tube3195 reflections with I > 2/s(I)
graphiteRint = 0.043
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 2.3°
ω scansh = −17→16
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −12→11
Tmin = 0.807, Tmax = 0.961l = −22→20
14531 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0595P)2 + 0.9697P] where P = (Fo2 + 2Fc2)/3
4706 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49537 (8)0.21955 (15)0.48980 (7)0.1177 (5)
Cl2−0.21432 (6)0.81829 (9)−0.21567 (5)0.0734 (3)
S11.01893 (5)−0.02943 (8)0.66961 (4)0.0505 (2)
S20.24956 (5)0.47421 (8)0.02400 (4)0.0479 (2)
O10.79636 (14)0.1555 (2)0.75863 (12)0.0602 (6)
O20.07429 (14)0.80422 (18)0.07521 (11)0.0540 (5)
N10.84965 (15)0.0558 (2)0.67035 (12)0.0433 (5)
H10.82980.03320.62130.052*
N20.98310 (15)0.0728 (2)0.79027 (12)0.0444 (6)
H20.94290.11000.80800.053*
N30.09962 (14)0.6311 (2)0.00710 (12)0.0411 (5)
H30.07290.5877−0.03630.049*
N40.23236 (15)0.6444 (2)0.12761 (13)0.0457 (6)
H40.20070.70650.13930.055*
C10.4980 (2)0.1639 (4)0.5816 (2)0.0839 (12)
H1A0.45210.21540.59660.101*
H1B0.47560.07390.57600.101*
C20.5993 (2)0.1718 (4)0.6469 (2)0.0709 (10)
H2A0.62140.26190.65280.085*
H2B0.59460.14520.69650.085*
C30.67435 (19)0.0891 (3)0.63244 (17)0.0539 (8)
H3A0.67470.11040.58070.065*
H3B0.6551−0.00170.63130.065*
C40.77790 (19)0.1056 (3)0.69406 (16)0.0449 (7)
C50.94940 (18)0.0371 (2)0.71449 (15)0.0394 (6)
C61.08327 (18)0.0522 (3)0.84386 (15)0.0415 (6)
C71.1446 (2)0.1570 (3)0.87086 (18)0.0564 (8)
H71.12200.24080.85380.068*
C81.2406 (2)0.1375 (4)0.9236 (2)0.0721 (10)
H81.28270.20870.94230.087*
C91.2743 (2)0.0148 (4)0.9486 (2)0.0752 (11)
H91.33940.00260.98360.090*
C101.2127 (2)−0.0904 (4)0.9225 (2)0.0722 (10)
H101.2355−0.17380.94040.087*
C111.1162 (2)−0.0724 (3)0.86907 (18)0.0570 (8)
H111.0741−0.14360.85050.068*
C12−0.2044 (2)0.8804 (3)−0.12092 (18)0.0609 (8)
H12A−0.22820.9697−0.12710.073*
H12B−0.24620.8291−0.10150.073*
C13−0.09988 (19)0.8768 (3)−0.06106 (17)0.0489 (7)
H13A−0.09780.9152−0.01180.059*
H13B−0.05830.9291−0.08030.059*
C14−0.05878 (19)0.7394 (3)−0.04492 (18)0.0488 (7)
H14A−0.10290.6861−0.02900.059*
H14B−0.05760.7031−0.09370.059*
C150.04357 (19)0.7319 (3)0.01824 (16)0.0418 (6)
C160.19336 (17)0.5905 (3)0.05662 (15)0.0382 (6)
C170.32572 (19)0.6032 (3)0.18617 (16)0.0446 (7)
C180.4123 (2)0.6520 (3)0.18414 (19)0.0616 (8)
H180.41110.71050.14480.074*
C190.5016 (2)0.6125 (4)0.2418 (2)0.0790 (11)
H190.56080.64490.24130.095*
C200.5028 (3)0.5265 (4)0.2990 (2)0.0837 (12)
H200.56290.50040.33750.100*
C210.4155 (3)0.4778 (4)0.3003 (2)0.0798 (11)
H210.41680.41890.33950.096*
C220.3259 (2)0.5167 (3)0.2432 (2)0.0610 (8)
H220.26660.48430.24370.073*
U11U22U33U12U13U23
Cl10.0732 (7)0.1601 (12)0.0867 (8)0.0387 (7)−0.0065 (6)0.0182 (8)
Cl20.0749 (6)0.0718 (6)0.0519 (5)−0.0005 (4)−0.0002 (4)0.0018 (4)
S10.0404 (4)0.0708 (5)0.0381 (4)0.0070 (3)0.0125 (3)−0.0009 (3)
S20.0404 (4)0.0594 (5)0.0391 (4)0.0100 (3)0.0101 (3)−0.0034 (3)
O10.0449 (11)0.0779 (14)0.0470 (13)0.0125 (10)0.0053 (9)−0.0161 (11)
O20.0520 (12)0.0504 (12)0.0459 (12)0.0108 (9)0.0031 (9)−0.0066 (10)
N10.0356 (12)0.0581 (14)0.0299 (11)0.0061 (10)0.0054 (9)−0.0013 (10)
N20.0354 (12)0.0555 (14)0.0364 (13)0.0069 (10)0.0071 (10)−0.0072 (11)
N30.0345 (11)0.0463 (13)0.0336 (12)0.0036 (10)0.0031 (9)−0.0036 (10)
N40.0383 (12)0.0511 (13)0.0381 (13)0.0097 (10)0.0039 (10)−0.0053 (11)
C10.0357 (17)0.118 (3)0.091 (3)−0.0003 (19)0.0159 (17)−0.035 (2)
C20.0382 (16)0.105 (3)0.062 (2)0.0053 (17)0.0103 (15)−0.021 (2)
C30.0397 (15)0.068 (2)0.0451 (17)0.0045 (14)0.0066 (13)−0.0058 (15)
C40.0390 (14)0.0520 (17)0.0382 (16)0.0057 (13)0.0084 (12)−0.0012 (13)
C50.0374 (14)0.0400 (14)0.0369 (15)−0.0003 (11)0.0098 (11)0.0044 (12)
C60.0345 (14)0.0529 (17)0.0332 (14)0.0032 (12)0.0086 (11)−0.0041 (12)
C70.0450 (16)0.0573 (19)0.060 (2)−0.0001 (14)0.0126 (15)−0.0051 (15)
C80.0425 (18)0.088 (3)0.073 (2)−0.0110 (18)0.0077 (16)−0.019 (2)
C90.0387 (17)0.114 (3)0.055 (2)0.016 (2)−0.0019 (15)−0.011 (2)
C100.063 (2)0.079 (2)0.059 (2)0.028 (2)0.0061 (17)0.0068 (19)
C110.0519 (18)0.0562 (18)0.0532 (19)0.0038 (15)0.0093 (14)−0.0026 (15)
C120.0498 (17)0.068 (2)0.056 (2)0.0158 (15)0.0109 (15)0.0062 (16)
C130.0448 (15)0.0491 (17)0.0470 (17)0.0048 (13)0.0110 (13)−0.0001 (13)
C140.0381 (15)0.0448 (16)0.0534 (18)0.0024 (12)0.0061 (13)0.0022 (13)
C150.0399 (14)0.0410 (15)0.0404 (16)0.0015 (12)0.0106 (12)0.0044 (13)
C160.0349 (13)0.0425 (15)0.0356 (14)−0.0009 (11)0.0116 (11)0.0033 (12)
C170.0398 (15)0.0471 (16)0.0371 (15)0.0030 (12)0.0038 (12)−0.0082 (13)
C180.0460 (17)0.078 (2)0.0545 (19)−0.0024 (16)0.0128 (15)−0.0066 (17)
C190.0416 (18)0.112 (3)0.073 (3)−0.0035 (19)0.0094 (17)−0.021 (2)
C200.054 (2)0.094 (3)0.073 (3)0.025 (2)−0.0097 (19)−0.011 (2)
C210.081 (3)0.067 (2)0.064 (2)0.017 (2)−0.002 (2)0.0118 (18)
C220.0537 (18)0.0553 (19)0.061 (2)0.0008 (15)0.0074 (16)0.0025 (16)
Cl1—C11.755 (4)C7—C81.379 (4)
Cl2—C121.794 (3)C7—H70.9300
S1—C51.673 (3)C8—C91.363 (5)
S2—C161.679 (3)C8—H80.9300
O1—C41.216 (3)C9—C101.368 (5)
O2—C151.214 (3)C9—H90.9300
N1—C41.375 (3)C10—C111.387 (4)
N1—C51.383 (3)C10—H100.9300
N1—H10.8600C11—H110.9300
N2—C51.329 (3)C12—C131.501 (4)
N2—C61.432 (3)C12—H12A0.9700
N2—H20.8600C12—H12B0.9700
N3—C151.381 (3)C13—C141.514 (4)
N3—C161.386 (3)C13—H13A0.9700
N3—H30.8600C13—H13B0.9700
N4—C161.320 (3)C14—C151.502 (4)
N4—C171.438 (3)C14—H14A0.9700
N4—H40.8600C14—H14B0.9700
C1—C21.507 (4)C17—C221.366 (4)
C1—H1A0.9700C17—C181.374 (4)
C1—H1B0.9700C18—C191.387 (5)
C2—C31.487 (4)C18—H180.9300
C2—H2A0.9700C19—C201.360 (6)
C2—H2B0.9700C19—H190.9300
C3—C41.511 (4)C20—C211.378 (6)
C3—H3A0.9700C20—H200.9300
C3—H3B0.9700C21—C221.385 (4)
C6—C71.365 (4)C21—H210.9300
C6—C111.380 (4)C22—H220.9300
C4—N1—C5129.0 (2)C9—C10—C11119.8 (3)
C4—N1—H1115.5C9—C10—H10120.1
C5—N1—H1115.5C11—C10—H10120.1
C5—N2—C6123.1 (2)C6—C11—C10119.3 (3)
C5—N2—H2118.5C6—C11—H11120.4
C6—N2—H2118.5C10—C11—H11120.4
C15—N3—C16128.5 (2)C13—C12—Cl2112.2 (2)
C15—N3—H3115.7C13—C12—H12A109.2
C16—N3—H3115.7Cl2—C12—H12A109.2
C16—N4—C17122.5 (2)C13—C12—H12B109.2
C16—N4—H4118.7Cl2—C12—H12B109.2
C17—N4—H4118.7H12A—C12—H12B107.9
C2—C1—Cl1113.2 (3)C12—C13—C14112.5 (2)
C2—C1—H1A108.9C12—C13—H13A109.1
Cl1—C1—H1A108.9C14—C13—H13A109.1
C2—C1—H1B108.9C12—C13—H13B109.1
Cl1—C1—H1B108.9C14—C13—H13B109.1
H1A—C1—H1B107.8H13A—C13—H13B107.8
C3—C2—C1113.4 (3)C15—C14—C13113.7 (2)
C3—C2—H2A108.9C15—C14—H14A108.8
C1—C2—H2A108.9C13—C14—H14A108.8
C3—C2—H2B108.9C15—C14—H14B108.8
C1—C2—H2B108.9C13—C14—H14B108.8
H2A—C2—H2B107.7H14A—C14—H14B107.7
C2—C3—C4113.7 (2)O2—C15—N3122.4 (2)
C2—C3—H3A108.8O2—C15—C14124.1 (2)
C4—C3—H3A108.8N3—C15—C14113.5 (2)
C2—C3—H3B108.8N4—C16—N3117.6 (2)
C4—C3—H3B108.8N4—C16—S2123.88 (19)
H3A—C3—H3B107.7N3—C16—S2118.51 (19)
O1—C4—N1123.1 (2)C22—C17—C18121.5 (3)
O1—C4—C3123.8 (2)C22—C17—N4118.8 (3)
N1—C4—C3113.1 (2)C18—C17—N4119.7 (3)
N2—C5—N1117.2 (2)C17—C18—C19118.9 (3)
N2—C5—S1124.53 (19)C17—C18—H18120.6
N1—C5—S1118.25 (19)C19—C18—H18120.6
C7—C6—C11120.7 (3)C20—C19—C18120.3 (3)
C7—C6—N2119.3 (2)C20—C19—H19119.9
C11—C6—N2120.0 (2)C18—C19—H19119.9
C6—C7—C8119.4 (3)C19—C20—C21120.4 (3)
C6—C7—H7120.3C19—C20—H20119.8
C8—C7—H7120.3C21—C20—H20119.8
C9—C8—C7120.5 (3)C20—C21—C22120.0 (4)
C9—C8—H8119.7C20—C21—H21120.0
C7—C8—H8119.7C22—C21—H21120.0
C8—C9—C10120.3 (3)C17—C22—C21119.0 (3)
C8—C9—H9119.9C17—C22—H22120.5
C10—C9—H9119.9C21—C22—H22120.5
Cl1—C1—C2—C3−62.3 (4)Cl2—C12—C13—C14−61.6 (3)
C1—C2—C3—C4175.0 (3)C12—C13—C14—C15−176.6 (3)
C5—N1—C4—O18.8 (5)C16—N3—C15—O23.3 (4)
C5—N1—C4—C3−170.0 (3)C16—N3—C15—C14−174.7 (2)
C2—C3—C4—O116.7 (5)C13—C14—C15—O233.0 (4)
C2—C3—C4—N1−164.5 (3)C13—C14—C15—N3−149.0 (2)
C6—N2—C5—N1176.3 (2)C17—N4—C16—N3175.2 (2)
C6—N2—C5—S1−3.1 (4)C17—N4—C16—S2−3.5 (4)
C4—N1—C5—N2−1.0 (4)C15—N3—C16—N47.5 (4)
C4—N1—C5—S1178.5 (2)C15—N3—C16—S2−173.7 (2)
C5—N2—C6—C7110.5 (3)C16—N4—C17—C22−97.0 (3)
C5—N2—C6—C11−71.0 (4)C16—N4—C17—C1883.5 (3)
C11—C6—C7—C80.3 (5)C22—C17—C18—C19−0.4 (5)
N2—C6—C7—C8178.8 (3)N4—C17—C18—C19179.1 (3)
C6—C7—C8—C90.2 (5)C17—C18—C19—C200.3 (5)
C7—C8—C9—C10−1.0 (6)C18—C19—C20—C210.0 (6)
C8—C9—C10—C111.3 (6)C19—C20—C21—C22−0.1 (6)
C7—C6—C11—C100.1 (5)C18—C17—C22—C210.2 (5)
N2—C6—C11—C10−178.5 (3)N4—C17—C22—C21−179.3 (3)
C9—C10—C11—C6−0.8 (5)C20—C21—C22—C170.0 (5)
Cg1 and Cg2 are the centroids of the C17–C22 and C6–C11 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.862.042.701 (3)134
N4—H4···O20.862.032.692 (3)133
C3—H3A···Cl10.972.753.194 (3)109
C14—H14B···Cl20.972.773.180 (3)106
N1—H1···S2i0.862.533.382 (2)173
N2—H2···O2ii0.862.403.142 (3)144
N3—H3···S1iii0.862.583.439 (2)175
N4—H4···O1ii0.862.323.057 (3)143
C14—H14A···S2iv0.972.733.676 (3)166
C2—H2A···Cg2ii0.972.803.419 (4)123
C13—H13A···Cg1ii0.972.833.417 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C17–C22 and C6–C11 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.862.042.701 (3)134
N4—H4⋯O20.862.032.692 (3)133
N1—H1⋯S2i0.862.533.382 (2)173
N2—H2⋯O2ii0.862.403.142 (3)144
N3—H3⋯S1iii0.862.583.439 (2)175
N4—H4⋯O1ii0.862.323.057 (3)143
C14—H14A⋯S2iv0.972.733.676 (3)166
C2—H2ACg2ii0.972.803.419 (4)123
C13—H13ACg1ii0.972.833.417 (3)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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3.  N-(3-Chloro-propion-yl)-N'-phenyl-thio-urea.

Authors:  Eliyanti A Othman; Siti K C Soh; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

2.  N-(4-Chloro-butanoyl)-N'-(2-fluoro-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nur Farhana Embong; Eliyanti A Othman; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  N-(4-Chloro-butano-yl)-N'-(2,5-dimeth-oxy-phen-yl)thio-urea.

Authors:  M Sukeri M Yusof; Norafiqah R Azmi; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

4.  1-(4-Chlorophenyl)-3-(3-chloro-pro-pionyl)thio-urea.

Authors:  Bohari M Yamin; Siti K C Soh; Siti Fairus M Yusoff
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

5.  N-(2-Chloro-5-nitro-phen-yl)-N'-(3-chloro-propion-yl)thio-urea.

Authors:  Bohari M Yamin; Siti K C Soh; Siti Fairus M Yusoff
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-11
  5 in total

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