Literature DB >> 22590400

1-(4-Chloro-butano-yl)-3-(2-chloro-phen-yl)thio-urea.

M Sukeri M Yusof, Nur Farhana Embong, Bohari M Yamin, Nurziana Ngah.   

Abstract

The asymmetric unit of the title compound, C(11)H(12)Cl(2)N(2)OS, contains two crystallographically independent mol-ecules with different conformations: the benzene ring and the thio-urea fragment form dihedral angles of 74.32 (11) and 89.39 (11)°. One amino group in each mol-ecule is involved in intra-molecular N-H⋯O and inter-molecular N-H⋯O hydrogen bonding: the latter links pairs of independent mol-ecules into dimers. In the crystal, weak N-H⋯S inter-actions link these dimers into chains propagating along the c axis.

Entities:  

Year:  2012        PMID: 22590400      PMCID: PMC3344638          DOI: 10.1107/S160053681201759X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Yusof et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12Cl2N2OS M = 291.19 Monoclinic, a = 14.396 (3) Å b = 10.941 (2) Å c = 18.093 (4) Å β = 109.399 (4)° V = 2688.0 (9) Å3 Z = 8 Mo Kα radiation μ = 0.62 mm−1 T = 298 K 0.42 × 0.41 × 0.39 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.780, T max = 0.793 14457 measured reflections 4727 independent reflections 3802 reflections with I > 2/s(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.03 4727 reflections 307 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201759X/cv5287sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201759X/cv5287Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201759X/cv5287Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12Cl2N2OSF(000) = 1200
Mr = 291.19Dx = 1.439 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6026 reflections
a = 14.396 (3) Åθ = 1.5–25.0°
b = 10.941 (2) ŵ = 0.62 mm1
c = 18.093 (4) ÅT = 298 K
β = 109.399 (4)°Block, yellow
V = 2688.0 (9) Å30.42 × 0.41 × 0.39 mm
Z = 8
Bruker SMART APEX CCD area-detector diffractometer4727 independent reflections
Radiation source: fine-focus sealed tube3802 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 83.66 pixels mm-1θmax = 25.0°, θmin = 1.5°
ω scanh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −13→12
Tmin = 0.780, Tmax = 0.793l = −16→21
14457 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0514P)2 + 1.5167P] where P = (Fo2 + 2Fc2)/3
4727 reflections(Δ/σ)max < 0.001
307 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.02869 (4)−0.00674 (6)0.33632 (3)0.04643 (17)
S20.23770 (4)0.49698 (6)0.02320 (4)0.04616 (17)
Cl1−0.08277 (6)−0.17066 (6)0.15579 (5)0.0684 (2)
Cl20.52142 (7)0.18550 (11)0.47501 (6)0.1086 (4)
Cl30.38361 (6)0.18324 (8)0.09743 (5)0.0738 (2)
Cl4−0.23405 (6)0.18796 (9)−0.20368 (5)0.0792 (3)
O10.20202 (12)0.12434 (18)0.23359 (10)0.0555 (5)
O20.05946 (12)0.18451 (16)0.07274 (10)0.0543 (5)
N10.01342 (13)0.07137 (17)0.21195 (10)0.0385 (4)
H1A0.05620.09160.19040.046*
N20.14546 (13)0.04033 (17)0.32535 (11)0.0400 (4)
H2A0.16480.01140.37220.048*
N30.21846 (13)0.32495 (18)0.11973 (11)0.0430 (5)
H3A0.18520.26700.13110.052*
N40.08539 (13)0.35124 (17)0.00731 (11)0.0382 (4)
H4A0.05850.3957−0.03340.046*
C1−0.14018 (18)−0.0300 (2)0.13660 (14)0.0450 (6)
C2−0.2387 (2)−0.0240 (3)0.09106 (16)0.0620 (8)
H2−0.2740−0.09520.07240.074*
C3−0.2839 (2)0.0878 (3)0.07364 (18)0.0734 (9)
H3−0.35000.09210.04310.088*
C4−0.2326 (2)0.1928 (3)0.10078 (19)0.0683 (8)
H4−0.26360.26820.08780.082*
C5−0.13441 (19)0.1870 (2)0.14771 (16)0.0540 (6)
H5−0.09970.25840.16690.065*
C6−0.08857 (16)0.0750 (2)0.16572 (13)0.0394 (5)
C70.04504 (15)0.03795 (19)0.28697 (13)0.0358 (5)
C80.21855 (16)0.0824 (2)0.29900 (14)0.0437 (5)
C90.31985 (18)0.0696 (3)0.35824 (16)0.0608 (7)
H9A0.32190.11280.40560.073*
H9B0.3322−0.01610.37150.073*
C100.39933 (19)0.1170 (3)0.33112 (17)0.0644 (8)
H10A0.38850.20360.32000.077*
H10B0.39550.07640.28250.077*
C110.5010 (2)0.0994 (4)0.38907 (18)0.0743 (9)
H11A0.54910.12260.36470.089*
H11B0.51070.01350.40270.089*
C120.39626 (18)0.2933 (2)0.16893 (14)0.0487 (6)
C130.48814 (19)0.3193 (3)0.22162 (17)0.0610 (7)
H130.54370.27950.21830.073*
C140.4967 (2)0.4046 (3)0.27902 (18)0.0690 (8)
H140.55840.42230.31490.083*
C150.4150 (2)0.4644 (3)0.28422 (18)0.0700 (8)
H150.42170.52190.32350.084*
C160.32314 (19)0.4390 (3)0.23107 (16)0.0562 (7)
H160.26790.47980.23430.067*
C170.31345 (16)0.3533 (2)0.17331 (13)0.0435 (6)
C180.17954 (15)0.3847 (2)0.05298 (12)0.0355 (5)
C190.02925 (16)0.2559 (2)0.01862 (13)0.0398 (5)
C20−0.07275 (16)0.2507 (2)−0.03992 (15)0.0455 (6)
H20A−0.07230.2884−0.08830.055*
H20B−0.11650.2979−0.02020.055*
C21−0.11259 (18)0.1228 (2)−0.05729 (15)0.0527 (6)
H21A−0.10750.0822−0.00840.063*
H21B−0.07260.0776−0.08170.063*
C22−0.2184 (2)0.1201 (3)−0.11039 (17)0.0689 (8)
H22A−0.25880.1636−0.08540.083*
H22B−0.24100.0360−0.11800.083*
U11U22U33U12U13U23
S10.0392 (3)0.0612 (4)0.0382 (3)−0.0085 (3)0.0118 (3)−0.0020 (3)
S20.0413 (3)0.0525 (4)0.0396 (3)−0.0108 (3)0.0067 (3)0.0051 (3)
Cl10.0886 (5)0.0397 (4)0.0721 (5)−0.0045 (3)0.0203 (4)−0.0071 (3)
Cl20.0732 (6)0.1360 (9)0.0916 (7)−0.0178 (6)−0.0060 (5)−0.0378 (6)
Cl30.0698 (5)0.0801 (5)0.0665 (5)0.0138 (4)0.0159 (4)−0.0065 (4)
Cl40.0651 (5)0.0973 (6)0.0554 (4)−0.0125 (4)−0.0066 (4)0.0048 (4)
O10.0387 (9)0.0765 (12)0.0466 (10)−0.0065 (9)0.0076 (8)0.0167 (9)
O20.0442 (9)0.0552 (10)0.0505 (10)−0.0112 (8)−0.0018 (8)0.0148 (9)
N10.0307 (9)0.0449 (11)0.0362 (10)−0.0047 (8)0.0062 (8)0.0032 (8)
N20.0336 (10)0.0486 (11)0.0332 (10)−0.0001 (8)0.0050 (8)0.0053 (8)
N30.0321 (10)0.0524 (12)0.0382 (10)−0.0086 (8)0.0031 (8)0.0081 (9)
N40.0333 (9)0.0435 (10)0.0326 (9)−0.0016 (8)0.0039 (8)0.0036 (8)
C10.0467 (13)0.0463 (13)0.0381 (13)−0.0081 (11)0.0089 (11)−0.0007 (10)
C20.0508 (15)0.077 (2)0.0480 (15)−0.0241 (15)0.0033 (13)−0.0025 (14)
C30.0405 (15)0.104 (3)0.0628 (19)−0.0010 (17)−0.0006 (13)0.0162 (18)
C40.0504 (16)0.073 (2)0.072 (2)0.0178 (15)0.0067 (15)0.0119 (16)
C50.0520 (15)0.0462 (14)0.0574 (16)0.0027 (12)0.0095 (13)0.0021 (12)
C60.0350 (11)0.0460 (13)0.0337 (11)−0.0014 (10)0.0066 (9)0.0044 (10)
C70.0345 (11)0.0316 (11)0.0374 (12)−0.0011 (9)0.0067 (9)−0.0026 (9)
C80.0360 (12)0.0510 (14)0.0399 (13)−0.0020 (10)0.0071 (10)0.0040 (11)
C90.0411 (14)0.087 (2)0.0479 (15)−0.0073 (14)0.0059 (12)0.0124 (14)
C100.0419 (14)0.093 (2)0.0562 (17)0.0013 (14)0.0129 (13)0.0058 (16)
C110.0378 (14)0.113 (3)0.0657 (19)0.0026 (16)0.0092 (13)−0.0008 (18)
C120.0416 (13)0.0552 (15)0.0441 (14)−0.0034 (11)0.0074 (11)0.0109 (11)
C130.0343 (13)0.0751 (19)0.0650 (18)0.0009 (13)0.0049 (12)0.0169 (16)
C140.0412 (15)0.084 (2)0.0635 (19)−0.0182 (15)−0.0068 (13)0.0083 (17)
C150.0652 (19)0.075 (2)0.0554 (18)−0.0198 (16)0.0008 (15)−0.0108 (15)
C160.0448 (14)0.0633 (17)0.0530 (16)−0.0035 (12)0.0065 (12)−0.0016 (13)
C170.0339 (12)0.0532 (14)0.0364 (12)−0.0063 (10)0.0024 (10)0.0096 (11)
C180.0302 (10)0.0407 (12)0.0327 (11)0.0019 (9)0.0066 (9)−0.0030 (9)
C190.0346 (11)0.0408 (12)0.0403 (13)−0.0014 (10)0.0073 (10)−0.0017 (10)
C200.0321 (11)0.0481 (14)0.0492 (14)−0.0023 (10)0.0041 (10)0.0025 (11)
C210.0456 (14)0.0565 (15)0.0486 (15)−0.0126 (12)0.0058 (12)0.0036 (12)
C220.0501 (16)0.089 (2)0.0587 (17)−0.0276 (15)0.0064 (13)−0.0009 (16)
S1—C71.671 (2)C5—H50.9300
S2—C181.673 (2)C8—C91.502 (3)
Cl1—C11.727 (3)C9—C101.481 (4)
Cl2—C111.758 (3)C9—H9A0.9700
Cl3—C121.732 (3)C9—H9B0.9700
Cl4—C221.788 (3)C10—C111.504 (4)
O1—C81.217 (3)C10—H10A0.9700
O2—C191.215 (3)C10—H10B0.9700
N1—C71.332 (3)C11—H11A0.9700
N1—C61.429 (3)C11—H11B0.9700
N1—H1A0.8600C12—C131.379 (4)
N2—C81.371 (3)C12—C171.386 (3)
N2—C71.381 (3)C13—C141.371 (4)
N2—H2A0.8600C13—H130.9300
N3—C181.323 (3)C14—C151.375 (5)
N3—C171.423 (3)C14—H140.9300
N3—H3A0.8600C15—C161.381 (4)
N4—C191.376 (3)C15—H150.9300
N4—C181.382 (3)C16—C171.377 (4)
N4—H4A0.8600C16—H160.9300
C1—C61.374 (3)C19—C201.499 (3)
C1—C21.385 (4)C20—C211.505 (4)
C2—C31.371 (5)C20—H20A0.9700
C2—H20.9300C20—H20B0.9700
C3—C41.365 (5)C21—C221.507 (4)
C3—H30.9300C21—H21A0.9700
C4—C51.388 (4)C21—H21B0.9700
C4—H40.9300C22—H22A0.9700
C5—C61.379 (3)C22—H22B0.9700
C7—N1—C6122.78 (18)C10—C11—Cl2112.7 (2)
C7—N1—H1A118.6C10—C11—H11A109.1
C6—N1—H1A118.6Cl2—C11—H11A109.1
C8—N2—C7128.89 (19)C10—C11—H11B109.1
C8—N2—H2A115.6Cl2—C11—H11B109.1
C7—N2—H2A115.6H11A—C11—H11B107.8
C18—N3—C17122.27 (19)C13—C12—C17120.6 (3)
C18—N3—H3A118.9C13—C12—Cl3119.9 (2)
C17—N3—H3A118.9C17—C12—Cl3119.53 (19)
C19—N4—C18128.30 (19)C14—C13—C12119.2 (3)
C19—N4—H4A115.8C14—C13—H13120.4
C18—N4—H4A115.8C12—C13—H13120.4
C6—C1—C2120.3 (2)C13—C14—C15120.8 (3)
C6—C1—Cl1120.41 (18)C13—C14—H14119.6
C2—C1—Cl1119.3 (2)C15—C14—H14119.6
C3—C2—C1119.5 (3)C14—C15—C16120.0 (3)
C3—C2—H2120.3C14—C15—H15120.0
C1—C2—H2120.3C16—C15—H15120.0
C4—C3—C2120.6 (3)C17—C16—C15119.9 (3)
C4—C3—H3119.7C17—C16—H16120.1
C2—C3—H3119.7C15—C16—H16120.1
C3—C4—C5120.1 (3)C16—C17—C12119.6 (2)
C3—C4—H4120.0C16—C17—N3119.9 (2)
C5—C4—H4120.0C12—C17—N3120.5 (2)
C6—C5—C4119.7 (3)N3—C18—N4116.67 (19)
C6—C5—H5120.2N3—C18—S2123.45 (16)
C4—C5—H5120.2N4—C18—S2119.88 (16)
C1—C6—C5119.8 (2)O2—C19—N4122.5 (2)
C1—C6—N1121.4 (2)O2—C19—C20123.3 (2)
C5—C6—N1118.8 (2)N4—C19—C20114.20 (19)
N1—C7—N2116.99 (19)C19—C20—C21113.5 (2)
N1—C7—S1124.22 (16)C19—C20—H20A108.9
N2—C7—S1118.80 (16)C21—C20—H20A108.9
O1—C8—N2122.7 (2)C19—C20—H20B108.9
O1—C8—C9124.0 (2)C21—C20—H20B108.9
N2—C8—C9113.3 (2)H20A—C20—H20B107.7
C10—C9—C8113.9 (2)C20—C21—C22112.7 (2)
C10—C9—H9A108.8C20—C21—H21A109.1
C8—C9—H9A108.8C22—C21—H21A109.1
C10—C9—H9B108.8C20—C21—H21B109.1
C8—C9—H9B108.8C22—C21—H21B109.1
H9A—C9—H9B107.7H21A—C21—H21B107.8
C9—C10—C11113.9 (2)C21—C22—Cl4112.16 (19)
C9—C10—H10A108.8C21—C22—H22A109.2
C11—C10—H10A108.8Cl4—C22—H22A109.2
C9—C10—H10B108.8C21—C22—H22B109.2
C11—C10—H10B108.8Cl4—C22—H22B109.2
H10A—C10—H10B107.7H22A—C22—H22B107.9
C6—C1—C2—C31.5 (4)C17—C12—C13—C140.6 (4)
Cl1—C1—C2—C3−178.0 (2)Cl3—C12—C13—C14−178.5 (2)
C1—C2—C3—C40.0 (5)C12—C13—C14—C15−0.3 (4)
C2—C3—C4—C5−1.2 (5)C13—C14—C15—C16−0.2 (5)
C3—C4—C5—C61.0 (5)C14—C15—C16—C170.5 (5)
C2—C1—C6—C5−1.8 (4)C15—C16—C17—C12−0.2 (4)
Cl1—C1—C6—C5177.8 (2)C15—C16—C17—N3178.4 (2)
C2—C1—C6—N1−179.2 (2)C13—C12—C17—C16−0.4 (4)
Cl1—C1—C6—N10.4 (3)Cl3—C12—C17—C16178.7 (2)
C4—C5—C6—C10.5 (4)C13—C12—C17—N3−179.0 (2)
C4—C5—C6—N1178.0 (2)Cl3—C12—C17—N30.1 (3)
C7—N1—C6—C1−76.9 (3)C18—N3—C17—C1689.7 (3)
C7—N1—C6—C5105.7 (3)C18—N3—C17—C12−91.7 (3)
C6—N1—C7—N2−178.95 (19)C17—N3—C18—N4−177.8 (2)
C6—N1—C7—S11.4 (3)C17—N3—C18—S21.4 (3)
C8—N2—C7—N16.1 (3)C19—N4—C18—N3−6.3 (3)
C8—N2—C7—S1−174.26 (19)C19—N4—C18—S2174.38 (18)
C7—N2—C8—O1−0.9 (4)C18—N4—C19—O2−1.8 (4)
C7—N2—C8—C9180.0 (2)C18—N4—C19—C20176.4 (2)
O1—C8—C9—C102.1 (4)O2—C19—C20—C21−33.5 (3)
N2—C8—C9—C10−178.8 (3)N4—C19—C20—C21148.3 (2)
C8—C9—C10—C11−177.6 (3)C19—C20—C21—C22174.7 (2)
C9—C10—C11—Cl2−66.2 (4)C20—C21—C22—Cl461.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.862.012.675 (3)133
N3—H3A···O20.861.982.652 (3)134
N1—H1A···O20.862.373.070 (3)138
N3—H3A···O10.862.373.073 (3)139
N2—H2A···S2i0.862.583.404 (2)160
N4—H4A···S1ii0.862.583.433 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O10.862.012.675 (3)133
N3—H3A⋯O20.861.982.652 (3)134
N1—H1A⋯O20.862.373.070 (3)138
N3—H3A⋯O10.862.373.073 (3)139
N2—H2A⋯S2i0.862.583.404 (2)160
N4—H4A⋯S1ii0.862.583.433 (2)174

Symmetry codes: (i) ; (ii) .

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