Literature DB >> 21827195

Chemical approaches to understand the language of histone modifications.

Abhinav Dhall1, Champak Chatterjee.   

Abstract

Genomic DNA in the eukaryotic cell nucleus is present in the form of chromatin. Histones are the principal protein component of chromatin, and their post-translational modifications play important roles in regulating the structure and function of chromatin and thereby in determining cell development and disease. An understanding of how histone modifications translate into downstream cellular events is important from both developmental and therapeutic perspectives. However, biochemical studies of histone modifications require access to quantities of homogenously modified histones that cannot be easily isolated from natural sources or generated by enzymatic methods. In the past decade, chemical synthesis has proven to be a powerful tool in translating the language of histone modifications by providing access to uniformly modified histones and by the development of stable analogues of thermodynamically labile modifications. This Review highlights the various synthetic and semisynthetic strategies that have enabled biochemical and biophysical characterization of site-specifically modified histones.

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Year:  2011        PMID: 21827195      PMCID: PMC7020651          DOI: 10.1021/cb200142c

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  119 in total

Review 1.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 2.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

3.  Cross-talk between histone H3 tails produces cooperative nucleosome acetylation.

Authors:  Shanshan Li; Michael A Shogren-Knaak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

4.  Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

Authors:  Andrew A Carmen; Lisa Milne; Michael Grunstein
Journal:  J Biol Chem       Date:  2001-11-19       Impact factor: 5.157

Review 5.  Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark.

Authors:  Alexander J Ruthenburg; C David Allis; Joanna Wysocka
Journal:  Mol Cell       Date:  2007-01-12       Impact factor: 17.970

6.  Molecular recognition of histone H3 by the WD40 protein WDR5.

Authors:  Jean-François Couture; Evys Collazo; Raymond C Trievel
Journal:  Nat Struct Mol Biol       Date:  2006-07-09       Impact factor: 15.369

7.  Enzymatic deacetylation of a synthetic peptide fragment of histone H4.

Authors:  A Kervabon; J Mery; J Parello
Journal:  FEBS Lett       Date:  1979-10-01       Impact factor: 4.124

8.  Dynamic changes in histone acetylation regulate origins of DNA replication.

Authors:  Ashwin Unnikrishnan; Philip R Gafken; Toshio Tsukiyama
Journal:  Nat Struct Mol Biol       Date:  2010-03-14       Impact factor: 15.369

9.  Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications.

Authors:  Dafna Nathan; Kristin Ingvarsdottir; David E Sterner; Gwendolyn R Bylebyl; Milos Dokmanovic; Jean A Dorsey; Kelly A Whelan; Mihajlo Krsmanovic; William S Lane; Pamela B Meluh; Erica S Johnson; Shelley L Berger
Journal:  Genes Dev       Date:  2006-04-05       Impact factor: 11.361

10.  Epigenome microarray platform for proteome-wide dissection of chromatin-signaling networks.

Authors:  Dennis J Bua; Alex J Kuo; Peggie Cheung; Chih Long Liu; Valentina Migliori; Alexsandra Espejo; Fabio Casadio; Christian Bassi; Bruno Amati; Mark T Bedford; Ernesto Guccione; Or Gozani
Journal:  PLoS One       Date:  2009-08-26       Impact factor: 3.240

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  24 in total

1.  Site-specific incorporation of ε-N-crotonyllysine into histones.

Authors:  Chan Hyuk Kim; Mingchao Kang; Hak Joong Kim; Abhishek Chatterjee; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2012-06-11       Impact factor: 15.336

2.  Sumoylated human histone H4 prevents chromatin compaction by inhibiting long-range internucleosomal interactions.

Authors:  Abhinav Dhall; Sijie Wei; Beat Fierz; Christopher L Woodcock; Tae-Hee Lee; Champak Chatterjee
Journal:  J Biol Chem       Date:  2014-10-06       Impact factor: 5.157

Review 3.  Studies of biochemical crosstalk in chromatin with semisynthetic histones.

Authors:  Calvin Jon Antolin Leonen; Esha Upadhyay; Champak Chatterjee
Journal:  Curr Opin Chem Biol       Date:  2018-02-27       Impact factor: 8.822

4.  Chemically Sumoylated Histone H4 Stimulates Intranucleosomal Demethylation by the LSD1-CoREST Complex.

Authors:  Abhinav Dhall; Caroline E Weller; Aurea Chu; Patrick M M Shelton; Champak Chatterjee
Journal:  ACS Chem Biol       Date:  2017-08-30       Impact factor: 5.100

5.  Nucleosome Binding by the Lysine Specific Demethylase 1 (LSD1) Enzyme Enables Histone H3 Demethylation.

Authors:  Abhinav Dhall; Patrick M M Shelton; Aurore M-F Delachat; Calvin J A Leonen; Beat Fierz; Champak Chatterjee
Journal:  Biochemistry       Date:  2020-06-26       Impact factor: 3.162

6.  Mass Spectrometry-Based Methodology for Identification of Native Histone Variant Modifications From Mammalian Tissues and Solid Tumors.

Authors:  A G Nuccio; M Bui; Y Dalal; A Nita-Lazar
Journal:  Methods Enzymol       Date:  2016-11-02       Impact factor: 1.600

Review 7.  Unraveling the complexity of ubiquitin signaling.

Authors:  Eric R Strieter; David A Korasick
Journal:  ACS Chem Biol       Date:  2012-01-11       Impact factor: 5.100

8.  Chemical Synthesis of Phosphorylated Histone H2A at Tyr57 Reveals Insight into the Inhibition Mode of the SAGA Deubiquitinating Module.

Authors:  Muhammad Jbara; Suman Kumar Maity; Michael Morgan; Cynthia Wolberger; Ashraf Brik
Journal:  Angew Chem Int Ed Engl       Date:  2016-03-09       Impact factor: 15.336

Review 9.  The Bump-and-Hole Tactic: Expanding the Scope of Chemical Genetics.

Authors:  Kabirul Islam
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

10.  A clickable glutamine (CliQ) derivative for the traceless reversible modification of peptides and proteins.

Authors:  Samuel D Whedon; Marissa K Parker; Elizabeth L Tyson; Tobias Ritterhoff; Patrick M M Shelton; Champak Chatterjee
Journal:  Chem Commun (Camb)       Date:  2019-02-12       Impact factor: 6.222

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