Literature DB >> 22196026

Unraveling the complexity of ubiquitin signaling.

Eric R Strieter1, David A Korasick.   

Abstract

Protein ubiquitination, the covalent attachment of ubiquitin to target proteins, has emerged as one of the most prevalent posttranslational modifications (PTMs), regulating nearly every cellular pathway. The diversity of signaling associated with this particular PTM stems from the myriad ways in which a target protein can be modified by ubiquitin, e.g., monoubiquitin, multi-monoubiquitin, and polyubiquitin linkages. In this Review, we focus on developments in both enzymatic and chemical methods that engender ubiquitin with new chemical and physical properties. Moreover, we highlight how these methods have enabled studies directed toward (i) characterizing enzymes responsible for reversing the ubiquitin modification, (ii) understanding the influence of ubiquitin on protein function and crosstalk with other PTMs, and (iii) uncovering the impact of polyubiquitin chain linkage and length on downstream signaling events.

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Year:  2012        PMID: 22196026      PMCID: PMC4805399          DOI: 10.1021/cb2004059

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  118 in total

Review 1.  Proteolysis: from the lysosome to ubiquitin and the proteasome.

Authors:  Aaron Ciechanover
Journal:  Nat Rev Mol Cell Biol       Date:  2005-01       Impact factor: 94.444

2.  Ubiquitination of alpha-synuclein by Siah-1 promotes alpha-synuclein aggregation and apoptotic cell death.

Authors:  James T Lee; Tiffany C Wheeler; Lian Li; Lih-Shen Chin
Journal:  Hum Mol Genet       Date:  2007-12-07       Impact factor: 6.150

Review 3.  The ubiquitin system.

Authors:  A Hershko; A Ciechanover
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

4.  Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne.

Authors:  Anja Bremm; Stefan M V Freund; David Komander
Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

5.  Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair.

Authors:  R M Hofmann; C M Pickart
Journal:  Cell       Date:  1999-03-05       Impact factor: 41.582

6.  Catalysis of lysine 48-specific ubiquitin chain assembly by residues in E2 and ubiquitin.

Authors:  Monica C Rodrigo-Brenni; Scott A Foster; David O Morgan
Journal:  Mol Cell       Date:  2010-08-27       Impact factor: 17.970

7.  Recognition of modified forms of ribonuclease A by the ubiquitin system.

Authors:  R L Dunten; R E Cohen
Journal:  J Biol Chem       Date:  1989-10-05       Impact factor: 5.157

Review 8.  Ubiquitin in NF-kappaB signaling.

Authors:  Yu-Hsin Chiu; Meng Zhao; Zhijian J Chen
Journal:  Chem Rev       Date:  2009-04       Impact factor: 60.622

9.  Activity-based ubiquitin-specific protease (USP) profiling of virus-infected and malignant human cells.

Authors:  Huib Ovaa; Benedikt M Kessler; Ulrika Rolén; Paul J Galardy; Hidde L Ploegh; Maria G Masucci
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

10.  The structure and conformation of Lys63-linked tetraubiquitin.

Authors:  Ajit B Datta; Greg L Hura; Cynthia Wolberger
Journal:  J Mol Biol       Date:  2009-08-04       Impact factor: 5.469

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  23 in total

1.  Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities.

Authors:  Grace H Pham; Ambar S J B Rana; E Nihal Korkmaz; Vivian H Trang; Qiang Cui; Eric R Strieter
Journal:  Protein Sci       Date:  2016-01-12       Impact factor: 6.725

2.  Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.

Authors:  Eric J Montemayor; Allison L Didychuk; Honghong Liao; Panzhou Hu; David A Brow; Samuel E Butcher
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-01-01       Impact factor: 7.652

3.  A link between the cytoplasmic engulfment protein Elmo1 and the Mediator complex subunit Med31.

Authors:  Joshua P Mauldin; Mingjian Lu; Soumita Das; Daeho Park; Peter B Ernst; Kodi S Ravichandran
Journal:  Curr Biol       Date:  2012-12-27       Impact factor: 10.834

4.  Modifying the vicinity of the isopeptide bond to reveal differential behavior of ubiquitin chains with interacting proteins: organic chemistry applied to synthetic proteins.

Authors:  Najat Haj-Yahya; Mahmood Haj-Yahya; Carlos A Castañeda; Liat Spasser; Hosahalli P Hemantha; Muhammad Jbara; Marlin Penner; Aaron Ciechanover; David Fushman; Ashraf Brik
Journal:  Angew Chem Int Ed Engl       Date:  2013-09-04       Impact factor: 15.336

5.  Nonenzymatic polymerization of ubiquitin: single-step synthesis and isolation of discrete ubiquitin oligomers.

Authors:  Vivian H Trang; Ellen M Valkevich; Shoko Minami; Yi-Chen Chen; Ying Ge; Eric R Strieter
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-19       Impact factor: 15.336

6.  Further characterization of the target of a potential aptamer biomarker for pancreatic cancer: cyclophilin B and its posttranslational modifications.

Authors:  Partha Ray; Bruce A Sullenger; Rebekah R White
Journal:  Nucleic Acid Ther       Date:  2013-10-23       Impact factor: 5.486

7.  Synthetic polyubiquitinated α-Synuclein reveals important insights into the roles of the ubiquitin chain in regulating its pathophysiology.

Authors:  Mahmood Haj-Yahya; Bruno Fauvet; Yifat Herman-Bachinsky; Mirva Hejjaoui; Sudhir N Bavikar; Subramanian Vedhanarayanan Karthikeyan; Aaron Ciechanover; Hilal A Lashuel; Ashraf Brik
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

8.  Radiosensitization of Cancer Cells by Inactivation of Cullin-RING E3 Ubiquitin Ligases.

Authors:  Dongping Wei; Meredith A Morgan; Yi Sun
Journal:  Transl Oncol       Date:  2012-10-01       Impact factor: 4.243

Review 9.  Partners and post-translational modifications of nuclear lamins.

Authors:  Dan N Simon; Katherine L Wilson
Journal:  Chromosoma       Date:  2013-03-12       Impact factor: 4.316

10.  Nonenzymatic assembly of branched polyubiquitin chains for structural and biochemical studies.

Authors:  Emma K Dixon; Carlos A Castañeda; Tanuja R Kashyap; Yan Wang; David Fushman
Journal:  Bioorg Med Chem       Date:  2013-03-15       Impact factor: 3.641

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