Literature DB >> 21823653

Pericyclic reactions catalyzed by chorismate-utilizing enzymes.

Audrey L Lamb1.   

Abstract

One of the fundamental questions of enzymology is how catalytic power is derived. This review focuses on recent developments in the structure--function relationships of chorismate-utilizing enzymes involved in siderophore biosynthesis to provide insight into the biocatalysis of pericyclic reactions. Specifically, salicylate synthesis by the two-enzyme pathway in Pseudomonas aeruginosa is examined. The isochorismate-pyruvate lyase is discussed in the context of its homologues, the chorismate mutases, and the isochorismate synthase is compared to its homologues in the MST family (menaquinone, siderophore, or tryptophan biosynthesis) of enzymes. The tentative conclusion is that the activities observed cannot be reconciled by inspection of the active site participants alone. Instead, individual activities must arise from unique dynamic properties of each enzyme that are tuned to promote specific chemistries.

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Year:  2011        PMID: 21823653      PMCID: PMC3164438          DOI: 10.1021/bi2009739

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  46 in total

1.  The 1.30 A resolution structure of the Bacillus subtilis chorismate mutase catalytic homotrimer.

Authors:  J E Ladner; P Reddy; A Davis; M Tordova; A J Howard; G L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-06

2.  The mechanism of catalysis of the chorismate to prephenate reaction by the Escherichia coli mutase enzyme.

Authors:  Sun Hur; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

3.  The near attack conformation approach to the study of the chorismate to prephenate reaction.

Authors:  Sun Hur; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-01       Impact factor: 11.205

4.  How an enzyme surmounts the activation energy barrier.

Authors:  Richard L Schowen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

5.  pH Dependence of catalysis by Pseudomonas aeruginosa isochorismate-pyruvate lyase: implications for transition state stabilization and the role of lysine 42.

Authors:  Jose Olucha; Andrew N Ouellette; Qianyi Luo; Audrey L Lamb
Journal:  Biochemistry       Date:  2011-07-22       Impact factor: 3.162

6.  Isochorismate synthase (PchA), the first and rate-limiting enzyme in salicylate biosynthesis of Pseudomonas aeruginosa.

Authors:  Catherine Gaille; Cornelia Reimmann; Dieter Haas
Journal:  J Biol Chem       Date:  2003-03-06       Impact factor: 5.157

7.  Salicylate biosynthesis in Pseudomonas aeruginosa. Purification and characterization of PchB, a novel bifunctional enzyme displaying isochorismate pyruvate-lyase and chorismate mutase activities.

Authors:  Catherine Gaille; Peter Kast; Dieter Haas
Journal:  J Biol Chem       Date:  2002-04-05       Impact factor: 5.157

8.  Comparison of formation of reactive conformers (NACs) for the Claisen rearrangement of chorismate to prephenate in water and in the E. coli mutase: the efficiency of the enzyme catalysis.

Authors:  Sun Hur; Thomas C Bruice
Journal:  J Am Chem Soc       Date:  2003-05-14       Impact factor: 15.419

9.  Just a near attack conformer for catalysis (chorismate to prephenate rearrangements in water, antibody, enzymes, and their mutants).

Authors:  Sun Hur; Thomas C Bruice
Journal:  J Am Chem Soc       Date:  2003-09-03       Impact factor: 15.419

10.  Selective stabilization of the chorismate mutase transition state by a positively charged hydrogen bond donor.

Authors:  Alexander Kienhöfer; Peter Kast; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2003-03-19       Impact factor: 15.419

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  11 in total

Review 1.  Current developments and challenges in the search for a naturally selected Diels-Alderase.

Authors:  Hak Joong Kim; Mark W Ruszczycky; Hung-wen Liu
Journal:  Curr Opin Chem Biol       Date:  2012-01-17       Impact factor: 8.822

2.  Expanding the results of a high throughput screen against an isochorismate-pyruvate lyase to enzymes of a similar scaffold or mechanism.

Authors:  Kathleen M Meneely; Qianyi Luo; Andrew P Riley; Byron Taylor; Anuradha Roy; Ross L Stein; Thomas E Prisinzano; Audrey L Lamb
Journal:  Bioorg Med Chem       Date:  2014-09-16       Impact factor: 3.641

3.  Redesign of MST enzymes to target lyase activity instead promotes mutase and dehydratase activities.

Authors:  Kathleen M Meneely; Qianyi Luo; Audrey L Lamb
Journal:  Arch Biochem Biophys       Date:  2013-09-19       Impact factor: 4.013

Review 4.  Recent Advances in Enzymatic Complexity Generation: Cyclization Reactions.

Authors:  Christopher T Walsh; Yi Tang
Journal:  Biochemistry       Date:  2017-12-20       Impact factor: 3.162

Review 5.  Unraveling the Structure and Mechanism of the MST(ery) Enzymes.

Authors:  Catherine L Shelton; Audrey L Lamb
Journal:  Trends Biochem Sci       Date:  2018-03-21       Impact factor: 13.807

Review 6.  The expanding world of biosynthetic pericyclases: cooperation of experiment and theory for discovery.

Authors:  Cooper S Jamieson; Masao Ohashi; Fang Liu; Yi Tang; K N Houk
Journal:  Nat Prod Rep       Date:  2019-05-22       Impact factor: 13.423

7.  Exploration of swapping enzymatic function between two proteins: a simulation study of chorismate mutase and isochorismate pyruvate lyase.

Authors:  Alexandra Choutko; Andreas P Eichenberger; Wilfred F van Gunsteren; Jožica Dolenc
Journal:  Protein Sci       Date:  2013-06       Impact factor: 6.725

Review 8.  Nonribosomal peptides for iron acquisition: pyochelin biosynthesis as a case study.

Authors:  Trey A Ronnebaum; Audrey L Lamb
Journal:  Curr Opin Struct Biol       Date:  2018-02-20       Impact factor: 6.809

9.  Lysine221 is the general base residue of the isochorismate synthase from Pseudomonas aeruginosa (PchA) in a reaction that is diffusion limited.

Authors:  Kathleen M Meneely; Qianyi Luo; Prajnaparamita Dhar; Audrey L Lamb
Journal:  Arch Biochem Biophys       Date:  2013-08-11       Impact factor: 4.013

10.  Direct evidence for a covalent ene adduct intermediate in NAD(P)H-dependent enzymes.

Authors:  Raoul G Rosenthal; Marc-Olivier Ebert; Patrick Kiefer; Dominik M Peter; Julia A Vorholt; Tobias J Erb
Journal:  Nat Chem Biol       Date:  2013-11-17       Impact factor: 15.040

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