Literature DB >> 12940735

Just a near attack conformer for catalysis (chorismate to prephenate rearrangements in water, antibody, enzymes, and their mutants).

Sun Hur1, Thomas C Bruice.   

Abstract

Standard free energies for formation of ground-state reactive conformers (DeltaGN degrees ) and transition states (DeltaG) in the conversion of chorismate to prephenate in water, B. subtilis mutase, E. coli mutase, and their mutants, as well as a catalytic antibody, are related by DeltaG = DeltaGN degrees + 16 kcal/mol. Thus, the differences in the rate constants for the water reaction and catalysts reactions reside in the mole fraction of substrate present as reactive conformers (NACs). These results, and knowledge of the importance of transition state stabilization in other cases, suggest a proposal that enzymes utilize both NAC and transition state stabilization in the mix required for the most efficient catalysis.

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Year:  2003        PMID: 12940735     DOI: 10.1021/ja0357846

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  pH Dependence of catalysis by Pseudomonas aeruginosa isochorismate-pyruvate lyase: implications for transition state stabilization and the role of lysine 42.

Authors:  Jose Olucha; Andrew N Ouellette; Qianyi Luo; Audrey L Lamb
Journal:  Biochemistry       Date:  2011-07-22       Impact factor: 3.162

2.  A dynamic view of enzyme catalysis.

Authors:  Aurora Jiménez; Pere Clapés; Ramon Crehuet
Journal:  J Mol Model       Date:  2008-03-06       Impact factor: 1.810

3.  How similar are enzyme active site geometries derived from quantum mechanical theozymes to crystal structures of enzyme-inhibitor complexes? Implications for enzyme design.

Authors:  Jason Dechancie; Fernando R Clemente; Adam J T Smith; Hakan Gunaydin; Yi-Lei Zhao; Xiyun Zhang; K N Houk
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

4.  Modification of residue 42 of the active site loop with a lysine-mimetic side chain rescues isochorismate-pyruvate lyase activity in Pseudomonas aeruginosa PchB.

Authors:  José Olucha; Kathleen M Meneely; Audrey L Lamb
Journal:  Biochemistry       Date:  2012-09-12       Impact factor: 3.162

Review 5.  Pericyclic reactions catalyzed by chorismate-utilizing enzymes.

Authors:  Audrey L Lamb
Journal:  Biochemistry       Date:  2011-08-12       Impact factor: 3.162

6.  Engineering of Cyclodextrin Glycosyltransferase through a Size/Polarity Guided Triple-Code Strategy with Enhanced α-Glycosyl Hesperidin Synthesis Ability.

Authors:  Hanchi Chen; Yi Liu; Xiangyi Ren; Jiajun Wang; Linjiang Zhu; Yuele Lu; Xiaolong Chen
Journal:  Appl Environ Microbiol       Date:  2022-08-11       Impact factor: 5.005

Review 7.  Transition States, analogues, and drug development.

Authors:  Vern L Schramm
Journal:  ACS Chem Biol       Date:  2013-01-04       Impact factor: 5.100

8.  Aromatic Claisen Rearrangements of O-prenylated tyrosine and model prenyl aryl ethers: Computational study of the role of water on acceleration of Claisen rearrangements.

Authors:  Sílvia Osuna; Seonah Kim; Guillaume Bollot; K N Houk
Journal:  European J Org Chem       Date:  2013-05-01

9.  Chemical accuracy in QM/MM calculations on enzyme-catalysed reactions.

Authors:  Adrian J Mulholland
Journal:  Chem Cent J       Date:  2007-07-05       Impact factor: 4.215

  9 in total

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