Literature DB >> 21751784

pH Dependence of catalysis by Pseudomonas aeruginosa isochorismate-pyruvate lyase: implications for transition state stabilization and the role of lysine 42.

Jose Olucha1, Andrew N Ouellette, Qianyi Luo, Audrey L Lamb.   

Abstract

An isochorismate-pyruvate lyase with adventitious chorismate mutase activity from Pseudomonas aerugionsa (PchB) achieves catalysis of both pericyclic reactions in part by the stabilization of reactive conformations and in part by electrostatic transition-state stabilization. When the active site loop Lys42 is mutated to histidine, the enzyme develops a pH dependence corresponding to a loss of catalytic power upon deprotonation of the histidine. Structural data indicate that the change is not due to changes in active site architecture, but due to the difference in charge at this key site. With loss of the positive charge on the K42H side chain at high pH, the enzyme retains lyase activity at ∼100-fold lowered catalytic efficiency but loses detectable mutase activity. We propose that both substrate organization and electrostatic transition state stabilization contribute to catalysis. However, the dominant reaction path for catalysis is dependent on reaction conditions, which influence the electrostatic properties of the enzyme active site amino acid side chains.
© 2011 American Chemical Society

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Year:  2011        PMID: 21751784      PMCID: PMC3156872          DOI: 10.1021/bi200599j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

1.  Conformational effects in enzyme catalysis: QM/MM free energy calculation of the 'NAC' contribution in chorismate mutase.

Authors:  Kara E Ranaghan; Adrian J Mulholland
Journal:  Chem Commun (Camb)       Date:  2004-04-27       Impact factor: 6.222

2.  Multiple high-level QM/MM reaction paths demonstrate transition-state stabilization in chorismate mutase: correlation of barrier height with transition-state stabilization.

Authors:  Frederik Claeyssens; Kara E Ranaghan; Frederick R Manby; Jeremy N Harvey; Adrian J Mulholland
Journal:  Chem Commun (Camb)       Date:  2005-09-07       Impact factor: 6.222

Review 3.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Detecting folding motifs and similarities in protein structures.

Authors:  G J Kleywegt; T A Jones
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Exploring the active site of chorismate mutase by combinatorial mutagenesis and selection: the importance of electrostatic catalysis.

Authors:  P Kast; M Asif-Ullah; N Jiang; D Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

6.  Small scale biosynthesis and purification of gram quantities of chorismic acid.

Authors:  C E Rieger; J L Turnbull
Journal:  Prep Biochem Biotechnol       Date:  1996-02       Impact factor: 2.162

7.  Isochorismate pyruvate lyase: a pericyclic reaction mechanism?

Authors:  Michael S DeClue; Kim K Baldridge; Dominik E Künzler; Peter Kast; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2005-11-02       Impact factor: 15.419

8.  Entropic and enthalpic components of catalysis in the mutase and lyase activities of Pseudomonas aeruginosa PchB.

Authors:  Qianyi Luo; Kathleen M Meneely; Audrey L Lamb
Journal:  J Am Chem Soc       Date:  2011-04-19       Impact factor: 15.419

9.  Salicylate biosynthesis in Pseudomonas aeruginosa. Purification and characterization of PchB, a novel bifunctional enzyme displaying isochorismate pyruvate-lyase and chorismate mutase activities.

Authors:  Catherine Gaille; Peter Kast; Dieter Haas
Journal:  J Biol Chem       Date:  2002-04-05       Impact factor: 5.157

10.  Transition state stabilization and substrate strain in enzyme catalysis: ab initio QM/MM modelling of the chorismate mutase reaction.

Authors:  Kara E Ranaghan; Lars Ridder; Borys Szefczyk; W Andrzej Sokalski; Johannes C Hermann; Adrian J Mulholland
Journal:  Org Biomol Chem       Date:  2004-03-03       Impact factor: 3.876

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  6 in total

1.  Modification of residue 42 of the active site loop with a lysine-mimetic side chain rescues isochorismate-pyruvate lyase activity in Pseudomonas aeruginosa PchB.

Authors:  José Olucha; Kathleen M Meneely; Audrey L Lamb
Journal:  Biochemistry       Date:  2012-09-12       Impact factor: 3.162

2.  Redesign of MST enzymes to target lyase activity instead promotes mutase and dehydratase activities.

Authors:  Kathleen M Meneely; Qianyi Luo; Audrey L Lamb
Journal:  Arch Biochem Biophys       Date:  2013-09-19       Impact factor: 4.013

Review 3.  Pericyclic reactions catalyzed by chorismate-utilizing enzymes.

Authors:  Audrey L Lamb
Journal:  Biochemistry       Date:  2011-08-12       Impact factor: 3.162

Review 4.  Nonribosomal peptides for iron acquisition: pyochelin biosynthesis as a case study.

Authors:  Trey A Ronnebaum; Audrey L Lamb
Journal:  Curr Opin Struct Biol       Date:  2018-02-20       Impact factor: 6.809

5.  Lysine221 is the general base residue of the isochorismate synthase from Pseudomonas aeruginosa (PchA) in a reaction that is diffusion limited.

Authors:  Kathleen M Meneely; Qianyi Luo; Prajnaparamita Dhar; Audrey L Lamb
Journal:  Arch Biochem Biophys       Date:  2013-08-11       Impact factor: 4.013

6.  Mechanism-based site-directed mutagenesis to shift the optimum pH of the phenylalanine ammonia-lyase from Rhodotorula glutinis JN-1.

Authors:  Longbao Zhu; Li Zhou; Wenjing Cui; Zhongmei Liu; Zhemin Zhou
Journal:  Biotechnol Rep (Amst)       Date:  2014-06-06
  6 in total

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