Literature DB >> 21802405

Hydrogen-bond energetics drive helix formation in membrane interfaces.

Paulo F Almeida1, Alexey S Ladokhin, Stephen H White.   

Abstract

The free energy cost ΔG of partitioning many unfolded peptides into membrane interfaces is unfavorable due to the cost of partitioning backbone peptide bonds. The partitioning cost is dramatically reduced if the peptide bonds participate in hydrogen bonds. The reduced cost underlies secondary structure formation by amphiphilic peptides partitioned into membrane interfaces through a process referred to as partitioning-folding coupling. This coupling is characterized by the free energy reduction per residue, ∆G(res) that drives folding. There is some debate about the correct value of ∆G(res) and its dependence on the hydrophobic moment (μ(H)) of amphiphilic α-helical peptides. We show how to compute ∆G(res) correctly. Using published data for two families of peptides with different hydrophobic moments and charges, we find that ∆G(res) does not depend upon μ(H). The best estimate of ∆G(res) is -0.37 ± 0.02 kcal mol(-1). This article is part of a Special Issue entitled: Membrane protein structure and function.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21802405      PMCID: PMC3213303          DOI: 10.1016/j.bbamem.2011.07.019

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  26 in total

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2.  Mechanism of the cell-penetrating peptide transportan 10 permeation of lipid bilayers.

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Authors:  A S Ladokhin; M E Selsted; S H White
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4.  A thermodynamic approach to the mechanism of cell-penetrating peptides in model membranes.

Authors:  Alesia N McKeown; Jeffrey L Naro; Laura J Huskins; Paulo F Almeida
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

5.  Thermodynamics of melittin binding to lipid bilayers. Aggregation and pore formation.

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6.  Interfacial folding and membrane insertion of a designed helical peptide.

Authors:  Alexey S Ladokhin; Stephen H White
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Authors:  Paulo F Almeida; Antje Pokorny
Journal:  Biochemistry       Date:  2009-09-01       Impact factor: 3.162

Review 8.  Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments.

Authors:  Eric V Schow; J Alfredo Freites; Philip C. Myint; Andreas Bernsel; Gunnar von Heijne; Stephen H White; Douglas J Tobias
Journal:  J Membr Biol       Date:  2010-12-03       Impact factor: 1.843

9.  Membrane partitioning: "classical" and "nonclassical" hydrophobic effects.

Authors:  Mónica Fernández-Vidal; Stephen H White; Alexey S Ladokhin
Journal:  J Membr Biol       Date:  2010-12-08       Impact factor: 1.843

10.  Folding amphipathic helices into membranes: amphiphilicity trumps hydrophobicity.

Authors:  Mónica Fernández-Vidal; Sajith Jayasinghe; Alexey S Ladokhin; Stephen H White
Journal:  J Mol Biol       Date:  2007-05-22       Impact factor: 5.469

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  27 in total

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Authors:  Justin Westerfield; Chitrak Gupta; Haden L Scott; Yujie Ye; Alayna Cameron; Blake Mertz; Francisco N Barrera
Journal:  Biophys J       Date:  2019-07-29       Impact factor: 4.033

Review 2.  Membrane-active peptides: binding, translocation, and flux in lipid vesicles.

Authors:  Paulo F Almeida
Journal:  Biochim Biophys Acta       Date:  2014-04-25

3.  Charge Distribution Fine-Tunes the Translocation of α-Helical Amphipathic Peptides across Membranes.

Authors:  Francis D O Ablan; B Logan Spaller; Kaitlyn I Abdo; Paulo F Almeida
Journal:  Biophys J       Date:  2016-10-18       Impact factor: 4.033

4.  Backbone Hydrogen Bond Energies in Membrane Proteins Are Insensitive to Large Changes in Local Water Concentration.

Authors:  Henry J Lessen; Ananya Majumdar; Karen G Fleming
Journal:  J Am Chem Soc       Date:  2020-03-17       Impact factor: 15.419

5.  Conformational states of melittin at a bilayer interface.

Authors:  Magnus Andersson; Jakob P Ulmschneider; Martin B Ulmschneider; Stephen H White
Journal:  Biophys J       Date:  2013-03-19       Impact factor: 4.033

6.  Comparison of lipid-dependent bilayer insertion of pHLIP and its P20G variant.

Authors:  Victor Vasquez-Montes; Janessa Gerhart; Kelly E King; Damien Thévenin; Alexey S Ladokhin
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-11-11       Impact factor: 3.747

7.  Effect of the aspartic acid D2 on the affinity of Polybia-MP1 to anionic lipid vesicles.

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Journal:  Eur Biophys J       Date:  2014-03-05       Impact factor: 1.733

8.  Mechanism and Determinants of Amphipathic Helix-Containing Protein Targeting to Lipid Droplets.

Authors:  Coline Prévost; Morris E Sharp; Nora Kory; Qingqing Lin; Gregory A Voth; Robert V Farese; Tobias C Walther
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

9.  Lipid headgroups modulate membrane insertion of pHLIP peptide.

Authors:  Alexander Kyrychenko; Victor Vasquez-Montes; Martin B Ulmschneider; Alexey S Ladokhin
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

Review 10.  Kinetics of peptide folding in lipid membranes.

Authors:  Kwang-Im Oh; Kathryn B Smith-Dupont; Beatrice N Markiewicz; Feng Gai
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

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