Literature DB >> 21786354

Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using double-pulsed field gradient MR.

Noam Shemesh1, Evren Özarslan, Peter J Basser, Yoram Cohen.   

Abstract

The accurate characterization of pore morphology is of great interest in a wide range of scientific disciplines. Conventional single-pulsed field gradient (s-PFG) diffusion MR can yield compartmental size and shape only when compartments are coherently ordered using q-space approaches that necessitate strong gradients. However, double-PFG (d-PFG) methodology can provide novel microstructural information even when specimens are characterized by polydispersity in size and shape, and even when anisotropic compartments are randomly oriented. In this study, for the first time, we show that angular d-PFG experiments can be used to accurately measure cellular size and shape anisotropy of fixed yeast cells employing relatively weak gradients. The cell size, as measured by light microscopy, was found to be 5.32 ± 0.83 µm, whereas the results from noninvasive angular d-PFG experiments yielded a cell size of 5.46 ± 0.45 µm. Moreover, the low compartment shape anisotropy of the cells could be inferred from experiments conducted at long mixing times. Finally, similar experiments were conducted in a phantom comprising anisotropic compartments that were randomly oriented, showing that angular d-PFG MR provides novel information on compartment eccentricity that could not be accessed using conventional methods. Angular d-PFG methodology seems to be promising for the accurate estimation of compartment size and compartment shape anisotropy in heterogeneous systems in general, and biological cells and tissues in particular.
Copyright © 2011 John Wiley & Sons, Ltd.

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Year:  2011        PMID: 21786354      PMCID: PMC3203313          DOI: 10.1002/nbm.1737

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  51 in total

1.  Displacement imaging of spinal cord using q-space diffusion-weighted MRI.

Authors:  Y Assaf; A Mayk; Y Cohen
Journal:  Magn Reson Med       Date:  2000-11       Impact factor: 4.668

2.  Two-dimensional NMR of velocity exchange: VEXSY and SERPENT.

Authors:  B Blümich; P T Callaghan; R A Damion; S Han; A A Khrapitchev; K J Packer; S Stapf
Journal:  J Magn Reson       Date:  2001-09       Impact factor: 2.229

3.  Background gradient suppression in pulsed gradient stimulated echo measurements.

Authors:  Phillip Zhe Sun; John Georg Seland; David Cory
Journal:  J Magn Reson       Date:  2003-04       Impact factor: 2.229

4.  Simulations of molecular diffusion in lattices of cells: insights for NMR of red blood cells.

Authors:  David G Regan; Philip W Kuchel
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

5.  A general framework to quantify the effect of restricted diffusion on the NMR signal with applications to double pulsed field gradient NMR experiments.

Authors:  Evren Ozarslan; Noam Shemesh; Peter J Basser
Journal:  J Chem Phys       Date:  2009-03-14       Impact factor: 3.488

6.  Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters.

Authors:  Evren Ozarslan; Peter J Basser
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

7.  Detection of microscopic anisotropy in gray matter and in a novel tissue phantom using double Pulsed Gradient Spin Echo MR.

Authors:  M E Komlosh; F Horkay; R Z Freidlin; U Nevo; Y Assaf; P J Basser
Journal:  J Magn Reson       Date:  2007-07-18       Impact factor: 2.229

8.  NMR "diffusion-diffraction" of water revealing alignment of erythrocytes in a magnetic field and their dimensions and membrane transport characteristics.

Authors:  P W Kuchel; A Coy; P Stilbs
Journal:  Magn Reson Med       Date:  1997-05       Impact factor: 4.668

9.  Compartment shape anisotropy (CSA) revealed by double pulsed field gradient MR.

Authors:  Evren Ozarslan
Journal:  J Magn Reson       Date:  2009-04-10       Impact factor: 2.229

10.  Filter-exchange PGSE NMR determination of cell membrane permeability.

Authors:  Ingrid Aslund; Agnieszka Nowacka; Markus Nilsson; Daniel Topgaard
Journal:  J Magn Reson       Date:  2009-07-17       Impact factor: 2.229

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  17 in total

1.  Nonparametric pore size distribution using d-PFG: comparison to s-PFG and migration to MRI.

Authors:  Dan Benjamini; Michal E Komlosh; Peter J Basser; Uri Nevo
Journal:  J Magn Reson       Date:  2014-06-30       Impact factor: 2.229

2.  Quantification of cell size using temporal diffusion spectroscopy.

Authors:  Xiaoyu Jiang; Hua Li; Jingping Xie; Ping Zhao; John C Gore; Junzhong Xu
Journal:  Magn Reson Med       Date:  2015-04-04       Impact factor: 4.668

Review 3.  Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook.

Authors:  Els Fieremans; Hong-Hsi Lee
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

4.  In vivo detection of microscopic anisotropy using quadruple pulsed-field gradient (qPFG) diffusion MRI on a clinical scanner.

Authors:  Alexandru V Avram; Evren Özarslan; Joelle E Sarlls; Peter J Basser
Journal:  Neuroimage       Date:  2012-08-25       Impact factor: 6.556

5.  JEDI: Joint Estimation Diffusion Imaging of macroscopic and microscopic tissue properties.

Authors:  Lawrence R Frank; Benjamin Zahneisen; Vitaly L Galinsky
Journal:  Magn Reson Med       Date:  2020-01-09       Impact factor: 4.668

Review 6.  Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation.

Authors:  Dmitry S Novikov; Els Fieremans; Sune N Jespersen; Valerij G Kiselev
Journal:  NMR Biomed       Date:  2018-10-15       Impact factor: 4.044

7.  Double diffusion encoding MRI for the clinic.

Authors:  Grant Yang; Qiyuan Tian; Christoph Leuze; Max Wintermark; Jennifer A McNab
Journal:  Magn Reson Med       Date:  2017-12-19       Impact factor: 4.668

8.  Mapping average axon diameters in porcine spinal cord white matter and rat corpus callosum using d-PFG MRI.

Authors:  M E Komlosh; E Özarslan; M J Lizak; I Horkayne-Szakaly; R Z Freidlin; F Horkay; P J Basser
Journal:  Neuroimage       Date:  2013-04-10       Impact factor: 6.556

9.  In vivo imaging of cancer cell size and cellularity using temporal diffusion spectroscopy.

Authors:  Xiaoyu Jiang; Hua Li; Jingping Xie; Eliot T McKinley; Ping Zhao; John C Gore; Junzhong Xu
Journal:  Magn Reson Med       Date:  2016-08-06       Impact factor: 4.668

10.  Impact of transcytolemmal water exchange on estimates of tissue microstructural properties derived from diffusion MRI.

Authors:  Hua Li; Xiaoyu Jiang; Jingping Xie; John C Gore; Junzhong Xu
Journal:  Magn Reson Med       Date:  2016-06-25       Impact factor: 4.668

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