Literature DB >> 12080109

Simulations of molecular diffusion in lattices of cells: insights for NMR of red blood cells.

David G Regan1, Philip W Kuchel.   

Abstract

The pulsed field-gradient spin-echo (PGSE) nuclear magnetic resonance (NMR) experiment, conducted on a suspension of red blood cells (RBC) in a strong magnetic field yields a q-space plot consisting of a series of maxima and minima. This is mathematically analogous to a classical optical diffraction pattern. The method provides a noninvasive and novel means of characterizing cell suspensions that is sensitive to changes in cell shape and packing density. The positions of the features in a q-space plot characterize the rate of exchange across the membrane, cell dimensions, and packing density. A diffusion tensor, containing information regarding the diffusion anisotropy of the system, can also be derived from the PGSE NMR data. In this study, we carried out Monte Carlo simulations of diffusion in suspensions of "virtual" cells that had either biconcave disc (as in RBC) or oblate spheroid geometry. The simulations were performed in a PGSE NMR context thus enabling predictions of q-space and diffusion tensor data. The simulated data were compared with those from real PGSE NMR diffusion experiments on RBC suspensions that had a range of hematocrit values. Methods that facilitate the processing of q-space data were also developed.

Mesh:

Year:  2002        PMID: 12080109      PMCID: PMC1302136          DOI: 10.1016/S0006-3495(02)75158-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  Evidence of red cell alignment in the magnetic field of an NMR spectrometer based on the diffusion tensor of water.

Authors:  P W Kuchel; C J Durrant; B E Chapman; P S Jarrett; D G Regan
Journal:  J Magn Reson       Date:  2000-08       Impact factor: 2.229

2.  Mean residence time of molecules diffusing in a cell bounded by a semi-permeable membrane: Monte Carlo simulations and an expression relating membrane transition probability to permeability.

Authors:  D G Regan; P W Kuchel
Journal:  Eur Biophys J       Date:  2000       Impact factor: 1.733

3.  Assignment of coherence features in NMR q-space plots to particular diffusion modes in erythrocyte suspensions.

Authors:  A M Torres; A T Taurins; D G Regan; B E Chapman; P W Kuchel
Journal:  J Magn Reson       Date:  1999-05       Impact factor: 2.229

4.  Parametric-equation representation of biconcave erythrocytes.

Authors:  P W Kuchel; E D Fackerell
Journal:  Bull Math Biol       Date:  1999-03       Impact factor: 1.758

5.  Characterisation of erythrocyte shapes and sizes by NMR diffusion-diffraction of water: correlations with electron micrographs.

Authors:  A M Torres; R J Michniewicz; B E Chapman; G A Young; P W Kuchel
Journal:  Magn Reson Imaging       Date:  1998-05       Impact factor: 2.546

6.  NMR "diffusion-diffraction" of water revealing alignment of erythrocytes in a magnetic field and their dimensions and membrane transport characteristics.

Authors:  P W Kuchel; A Coy; P Stilbs
Journal:  Magn Reson Med       Date:  1997-05       Impact factor: 4.668

7.  Measurement of translational displacement probabilities by NMR: an indicator of compartmentation.

Authors:  D G Cory; A N Garroway
Journal:  Magn Reson Med       Date:  1990-06       Impact factor: 4.668

8.  Orientation of erythrocytes in a strong static magnetic field.

Authors:  T Higashi; A Yamagishi; T Takeuchi; N Kawaguchi; S Sagawa; S Onishi; M Date
Journal:  Blood       Date:  1993-08-15       Impact factor: 22.113

9.  Cell volume dependence of 1H spin-echo NMR signals in human erythrocyte suspensions. The influence of in situ field gradients.

Authors:  Z H Endre; P W Kuchel; B E Chapman
Journal:  Biochim Biophys Acta       Date:  1984-03-23

10.  On measuring the diffusional water permeability of human red blood cells and ghosts by nuclear magnetic resonance.

Authors:  G Benga; V I Pop; O Popescu; V Borza
Journal:  J Biochem Biophys Methods       Date:  1990 Jul-Aug
  10 in total
  6 in total

1.  Simulations of NMR-detected diffusion in suspensions of red cells: the effects of variation in membrane permeability and observation time.

Authors:  David G Regan; Philip W Kuchel
Journal:  Eur Biophys J       Date:  2003-07-12       Impact factor: 1.733

2.  NMR q-space analysis of canonical shapes of human erythrocytes: stomatocytes, discocytes, spherocytes and echinocytes.

Authors:  Timothy J Larkin; Guilhem Pages; Bogdan E Chapman; John E J Rasko; Philip W Kuchel
Journal:  Eur Biophys J       Date:  2012-05-29       Impact factor: 1.733

3.  Diffusion tensor of water in model articular cartilage.

Authors:  Konstantin I Momot
Journal:  Eur Biophys J       Date:  2010-10-23       Impact factor: 1.733

4.  Erythrocyte orientational and cell volume effects on NMR q-space analysis: simulations of restricted diffusion.

Authors:  Timothy J Larkin; Philip W Kuchel
Journal:  Eur Biophys J       Date:  2009-04-28       Impact factor: 1.733

5.  Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using double-pulsed field gradient MR.

Authors:  Noam Shemesh; Evren Özarslan; Peter J Basser; Yoram Cohen
Journal:  NMR Biomed       Date:  2011-07-22       Impact factor: 4.044

6.  Diffusion microscopist simulator: a general Monte Carlo simulation system for diffusion magnetic resonance imaging.

Authors:  Chun-Hung Yeh; Benoît Schmitt; Denis Le Bihan; Jing-Rebecca Li-Schlittgen; Ching-Po Lin; Cyril Poupon
Journal:  PLoS One       Date:  2013-10-10       Impact factor: 3.240

  6 in total

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