Literature DB >> 29920376

Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook.

Els Fieremans1, Hong-Hsi Lee2.   

Abstract

Phantoms, both numerical (software) and physical (hardware), can serve as a gold standard for the validation of MRI methods probing the brain microstructure. This review aims to provide guidelines on how to build, implement, or choose the right phantom for a particular application, along with an overview of the current state-of-the-art of phantoms dedicated to study brain microstructure with MRI. For physical phantoms, we discuss the essential requirements and relevant characteristics of both the (NMR visible) liquid and (NMR invisible) phantom materials that induce relevant microstructural features detectable via MRI, based on diffusion, intra-voxel incoherent motion, magnetization transfer or magnetic susceptibility weighted contrast. In particular, for diffusion MRI, many useful phantoms have been proposed, ranging from simple liquids to advanced biomimetic phantoms consisting of hollow or plain microfibers and capillaries. For numerical phantoms, the focus is on Monte Carlo simulations of random walk, for which the basic principles, along with useful criteria to check and potential pitfalls are reviewed, in addition to a literature overview highlighting recent advances. While many phantoms exist already, the current review aims to stimulate further research in the field and to address remaining needs.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Brain; Hardware phantoms; Microstructure; Numerical phantoms; Validation

Mesh:

Year:  2018        PMID: 29920376      PMCID: PMC6175674          DOI: 10.1016/j.neuroimage.2018.06.046

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  200 in total

1.  General and variable features of varicosity spacing along unmyelinated axons in the hippocampus and cerebellum.

Authors:  Gordon M G Shepherd; Morten Raastad; Per Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

2.  A simple isotropic phantom for diffusional kurtosis imaging.

Authors:  Els Fieremans; Antonio Pires; Jens H Jensen
Journal:  Magn Reson Med       Date:  2011-12-08       Impact factor: 4.668

3.  Novel multisection design of anisotropic diffusion phantoms.

Authors:  Ezequiel Farrher; Joachim Kaffanke; A Avdo Celik; Tony Stöcker; Farida Grinberg; N Jon Shah
Journal:  Magn Reson Imaging       Date:  2012-01-27       Impact factor: 2.546

4.  A fast random walk algorithm for computing the pulsed-gradient spin-echo signal in multiscale porous media.

Authors:  Denis S Grebenkov
Journal:  J Magn Reson       Date:  2010-11-17       Impact factor: 2.229

Review 5.  Revisiting an old friend: manganese-based MRI contrast agents.

Authors:  Dipanjan Pan; Shelton D Caruthers; Angana Senpan; Ann H Schmieder; Samuel A Wickline; Gregory M Lanza
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2010-09-21

6.  Pediatric brain tumor consortium multisite assessment of apparent diffusion coefficient z-axis variation assessed with an ice-water phantom.

Authors:  Robert V Mulkern; Kelsey I Ricci; Sridhar Vajapeyam; Thomas L Chenevert; Dariya I Malyarenko; Mehmet Kocak; Tina Young Poussaint
Journal:  Acad Radiol       Date:  2014-11-27       Impact factor: 3.173

7.  Pore diameter mapping using double pulsed-field gradient MRI and its validation using a novel glass capillary array phantom.

Authors:  Michal E Komlosh; Evren Özarslan; Martin J Lizak; Ferenc Horkay; Vincent Schram; Noam Shemesh; Yoram Cohen; Peter J Basser
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

8.  Complex geometric models of diffusion and relaxation in healthy and damaged white matter.

Authors:  Bennett A Landman; Jonathan A D Farrell; Seth A Smith; Daniel S Reich; Peter A Calabresi; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2010-02       Impact factor: 4.044

9.  New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models.

Authors:  Cyril Poupon; Bernard Rieul; Irina Kezele; Muriel Perrin; Fabrice Poupon; Jean-François Mangin
Journal:  Magn Reson Med       Date:  2008-12       Impact factor: 4.668

10.  Test liquids for quantitative MRI measurements of self-diffusion coefficient in vivo.

Authors:  P S Tofts; D Lloyd; C A Clark; G J Barker; G J Parker; P McConville; C Baldock; J M Pope
Journal:  Magn Reson Med       Date:  2000-03       Impact factor: 4.668

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  22 in total

Review 1.  Challenges in diffusion MRI tractography - Lessons learned from international benchmark competitions.

Authors:  Kurt G Schilling; Alessandro Daducci; Klaus Maier-Hein; Cyril Poupon; Jean-Christophe Houde; Vishwesh Nath; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Magn Reson Imaging       Date:  2018-11-29       Impact factor: 2.546

2.  Diffusion MRI microstructural models in the cervical spinal cord - Application, normative values, and correlations with histological analysis.

Authors:  Kurt G Schilling; Samantha By; Haley R Feiler; Bailey A Box; Kristin P O'Grady; Atlee Witt; Bennett A Landman; Seth A Smith
Journal:  Neuroimage       Date:  2019-07-19       Impact factor: 6.556

3.  Diffusion-time dependence of diffusional kurtosis in the mouse brain.

Authors:  Manisha Aggarwal; Matthew D Smith; Peter A Calabresi
Journal:  Magn Reson Med       Date:  2020-02-05       Impact factor: 4.668

Review 4.  Anthropomorphic brain phantoms for use in MRI systems: a systematic review.

Authors:  Noelle Crasto; Abirami Kirubarajan; Dafna Sussman
Journal:  MAGMA       Date:  2021-08-31       Impact factor: 2.310

Review 5.  Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome.

Authors:  Susie Y Huang; Thomas Witzel; Boris Keil; Alina Scholz; Mathias Davids; Peter Dietz; Elmar Rummert; Rebecca Ramb; John E Kirsch; Anastasia Yendiki; Qiuyun Fan; Qiyuan Tian; Gabriel Ramos-Llordén; Hong-Hsi Lee; Aapo Nummenmaa; Berkin Bilgic; Kawin Setsompop; Fuyixue Wang; Alexandru V Avram; Michal Komlosh; Dan Benjamini; Kulam Najmudeen Magdoom; Sudhir Pathak; Walter Schneider; Dmitry S Novikov; Els Fieremans; Slimane Tounekti; Choukri Mekkaoui; Jean Augustinack; Daniel Berger; Alexander Shapson-Coe; Jeff Lichtman; Peter J Basser; Lawrence L Wald; Bruce R Rosen
Journal:  Neuroimage       Date:  2021-08-28       Impact factor: 7.400

6.  Brain Reserve in a Case of Cognitive Resilience to Severe Leukoaraiosis.

Authors:  Dana M Szeles; Nicholas J Milano; Hunter J Moss; Maria Vittoria Spampinato; Jens H Jensen; Andreana Benitez
Journal:  J Int Neuropsychol Soc       Date:  2020-06-16       Impact factor: 2.892

7.  Neuroanatomical underpinning of diffusion kurtosis measurements in the cerebral cortex of healthy macaque brains.

Authors:  Tianjia Zhu; Qinmu Peng; Austin Ouyang; Hao Huang
Journal:  Magn Reson Med       Date:  2020-10-15       Impact factor: 4.668

8.  Realistic Microstructure Simulator (RMS): Monte Carlo simulations of diffusion in three-dimensional cell segmentations of microscopy images.

Authors:  Hong-Hsi Lee; Els Fieremans; Dmitry S Novikov
Journal:  J Neurosci Methods       Date:  2020-12-03       Impact factor: 2.390

Review 9.  The present and the future of microstructure MRI: From a paradigm shift to normal science.

Authors:  Dmitry S Novikov
Journal:  J Neurosci Methods       Date:  2020-10-21       Impact factor: 2.390

10.  Time-dependent Diffusion in Transient Splenial Lesion: Comparison between Oscillating-gradient Spin-echo Measurements and Monte-Carlo Simulation.

Authors:  Tomoko Maekawa; Kouhei Kamiya; Katsutoshi Murata; Thorsten Feiweier; Masaaki Hori; Shigeki Aoki
Journal:  Magn Reson Med Sci       Date:  2020-07-01       Impact factor: 2.471

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