Literature DB >> 21764967

A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer.

Thomas M Gihring1, Gengxin Zhang, Craig C Brandt, Scott C Brooks, James H Campbell, Susan Carroll, Craig S Criddle, Stefan J Green, Phil Jardine, Joel E Kostka, Kenneth Lowe, Tonia L Mehlhorn, Will Overholt, David B Watson, Zamin Yang, Wei-Min Wu, Christopher W Schadt.   

Abstract

Subsurface amendments of slow-release substrates (e.g., emulsified vegetable oil [EVO]) are thought to be a pragmatic alternative to using short-lived, labile substrates for sustained uranium bioimmobilization within contaminated groundwater systems. Spatial and temporal dynamics of subsurface microbial communities during EVO amendment are unknown and likely differ significantly from those of populations stimulated by soluble substrates, such as ethanol and acetate. In this study, a one-time EVO injection resulted in decreased groundwater U concentrations that remained below initial levels for approximately 4 months. Pyrosequencing and quantitative PCR of 16S rRNA from monitoring well samples revealed a rapid decline in groundwater bacterial community richness and diversity after EVO injection, concurrent with increased 16S rRNA copy levels, indicating the selection of a narrow group of taxa rather than a broad community stimulation. Members of the Firmicutes family Veillonellaceae dominated after injection and most likely catalyzed the initial oil decomposition. Sulfate-reducing bacteria from the genus Desulforegula, known for long-chain fatty acid oxidation to acetate, also dominated after EVO amendment. Acetate and H(2) production during EVO degradation appeared to stimulate NO(3)(-), Fe(III), U(VI), and SO(4)(2-) reduction by members of the Comamonadaceae, Geobacteriaceae, and Desulfobacterales. Methanogenic archaea flourished late to comprise over 25% of the total microbial community. Bacterial diversity rebounded after 9 months, although community compositions remained distinct from the preamendment conditions. These results demonstrated that a one-time EVO amendment served as an effective electron donor source for in situ U(VI) bioreduction and that subsurface EVO degradation and metal reduction were likely mediated by successive identifiable guilds of organisms.

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Year:  2011        PMID: 21764967      PMCID: PMC3165427          DOI: 10.1128/AEM.00220-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  39 in total

Review 1.  Emerging techniques for anaerobic bioremediation of contaminated environments.

Authors:  J D Coates; R T Anderson
Journal:  Trends Biotechnol       Date:  2000-10       Impact factor: 19.536

2.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

3.  In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen.

Authors:  Wei-Min Wu; Jack Carley; Jian Luo; Matthew A Ginder-Vogel; Erick Cardenas; Mary Beth Leigh; Chiachi Hwang; Shelly D Kelly; Chuanmin Ruan; Liyou Wu; Joy Van Nostrand; Terry Gentry; Kenneth Lowe; Tonia Mehlhorn; Sue Carroll; Wensui Luo; Matthew W Fields; Baohua Gu; David Watson; Kenneth M Kemner; Terence Marsh; James Tiedje; Jizhong Zhou; Scott Fendorf; Peter K Kitanidis; Philip M Jardine; Craig S Criddle
Journal:  Environ Sci Technol       Date:  2007-08-15       Impact factor: 9.028

4.  Colloquium paper: resistance, resilience, and redundancy in microbial communities.

Authors:  Steven D Allison; Jennifer B H Martiny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-11       Impact factor: 11.205

5.  Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-05-02       Impact factor: 4.792

6.  Characterization of long-chain fatty-acid-degrading syntrophic associations from a biodegraded oil reservoir.

Authors:  Agnès Grabowski; Denis Blanchet; Christian Jeanthon
Journal:  Res Microbiol       Date:  2005-08       Impact factor: 3.992

7.  In-situ evidence for uranium immobilization and remobilization.

Authors:  John M Senko; Jonathan D Istok; Joseph M Suflita; Lee R Krumholz
Journal:  Environ Sci Technol       Date:  2002-04-01       Impact factor: 9.028

8.  Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1.

Authors:  Mostafa S Elshahed; Fares Z Najar; Mandy Aycock; Chunmei Qu; Bruce A Roe; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

9.  Characterization of archaeal community in contaminated and uncontaminated surface stream sediments.

Authors:  Iris Porat; Tatiana A Vishnivetskaya; Jennifer J Mosher; Craig C Brandt; Zamin K Yang; Scott C Brooks; Liyuan Liang; Meghan M Drake; Mircea Podar; Steven D Brown; Anthony V Palumbo
Journal:  Microb Ecol       Date:  2010-08-20       Impact factor: 4.552

10.  High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

Authors:  Todd Z DeSantis; Eoin L Brodie; Jordan P Moberg; Ingrid X Zubieta; Yvette M Piceno; Gary L Andersen
Journal:  Microb Ecol       Date:  2007-03-02       Impact factor: 4.192

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  23 in total

1.  Abundance, diversity and activity of sulfate-reducing prokaryotes in heavy metal-contaminated sediment from a salt marsh in the Medway Estuary (UK).

Authors:  Laurent Quillet; Ludovic Besaury; Milka Popova; Sandrine Paissé; Julien Deloffre; Baghdad Ouddane
Journal:  Mar Biotechnol (NY)       Date:  2011-11-30       Impact factor: 3.619

2.  The shifts of sediment microbial community phylogenetic and functional structures during chromium (VI) reduction.

Authors:  Zhengsheng Yu; Zhili He; Xuanyu Tao; Jizhong Zhou; Yunfeng Yang; Mengxin Zhao; Xiaowei Zhang; Zhe Zheng; Tong Yuan; Pu Liu; Yong Chen; Virgo Nolan; Xiangkai Li
Journal:  Ecotoxicology       Date:  2016-09-16       Impact factor: 2.823

3.  Simulated reactive zone with emulsified vegetable oil for the long-term remediation of Cr(VI)-contaminated aquifer: dynamic evolution of geological parameters and groundwater microbial community.

Authors:  Jun Dong; Jinqiu Yu; Qiburi Bao
Journal:  Environ Sci Pollut Res Int       Date:  2018-10-10       Impact factor: 4.223

4.  Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.

Authors:  Steven D Brown; Anthony V Palumbo; Nicolai Panikov; Thilini Ariyawansa; Dawn M Klingeman; Courtney M Johnson; Miriam L Land; Sagar M Utturkar; Slava S Epstein
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

5.  Stochasticity, succession, and environmental perturbations in a fluidic ecosystem.

Authors:  Jizhong Zhou; Ye Deng; Ping Zhang; Kai Xue; Yuting Liang; Joy D Van Nostrand; Yunfeng Yang; Zhili He; Liyou Wu; David A Stahl; Terry C Hazen; James M Tiedje; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

Review 6.  Metagenomic applications in environmental monitoring and bioremediation.

Authors:  Stephen M Techtmann; Terry C Hazen
Journal:  J Ind Microbiol Biotechnol       Date:  2016-08-24       Impact factor: 3.346

7.  The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1).

Authors:  Rosa León-Zayas; Logan Peoples; Jennifer F Biddle; Sheila Podell; Mark Novotny; James Cameron; Roger S Lasken; Douglas H Bartlett
Journal:  Environ Microbiol       Date:  2017-06-22       Impact factor: 5.491

8.  Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Authors:  Steven D Brown; Mircea Podar; Dawn M Klingeman; Courtney M Johnson; Zamin K Yang; Sagar M Utturkar; Miriam L Land; Jennifer J Mosher; Richard A Hurt; Tommy J Phelps; Anthony V Palumbo; Adam P Arkin; Terry C Hazen; Dwayne A Elias
Journal:  J Bacteriol       Date:  2012-09       Impact factor: 3.490

9.  Metals other than uranium affected microbial community composition in a historical uranium-mining site.

Authors:  Jana Sitte; Sylvia Löffler; Eva-Maria Burkhardt; Katherine C Goldfarb; Georg Büchel; Terry C Hazen; Kirsten Küsel
Journal:  Environ Sci Pollut Res Int       Date:  2015-07-01       Impact factor: 4.223

10.  Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1.

Authors:  Harry R Beller; Ruyang Han; Ulas Karaoz; Hsiaochien Lim; Eoin L Brodie
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

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