Literature DB >> 16269812

Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1.

Mostafa S Elshahed1, Fares Z Najar, Mandy Aycock, Chunmei Qu, Bruce A Roe, Lee R Krumholz.   

Abstract

A metagenomic library was constructed from the anaerobic sediments of a mesophilic sulfur spring. Thirty-five bacterial 16S rRNA gene-containing clones were identified in this library. Analysis of a genomic fragment belonging to candidate division OD1 provided useful insights into the physiology and biochemistry of this novel, yet-uncultured candidate division.

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Year:  2005        PMID： 16269812      PMCID： PMC1287674          DOI： 10.1128/AEM.71.11.7598-7602.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  16 in total

1.  Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment.

Authors:  T Kaeberlein; K Lewis; S S Epstein
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

2.  Use of the 16S--23S ribosomal genes spacer region in studies of prokaryotic diversity.

Authors:  J García-Martínez; S G Acinas; A I Antón; F Rodríguez-Valera
Journal:  J Microbiol Methods       Date:  1999-05       Impact factor: 2.363

3.  Cultivating the uncultured.

Authors:  Karsten Zengler; Gerardo Toledo; Michael Rappe; James Elkins; Eric J Mathur; Jay M Short; Martin Keller
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-18       Impact factor: 11.205

Review 4.  The uncultured microbial majority.

Authors:  Michael S Rappé; Stephen J Giovannoni
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

5.  A census of rRNA genes and linked genomic sequences within a soil metagenomic library.

Authors:  Mark R Liles; Brian F Manske; Scott B Bintrim; Jo Handelsman; Robert M Goodman
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

6.  Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor.

Authors:  Peter R Girguis; Victoria J Orphan; Steven J Hallam; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

7.  Reverse methanogenesis: testing the hypothesis with environmental genomics.

Authors:  Steven J Hallam; Nik Putnam; Christina M Preston; John C Detter; Daniel Rokhsar; Paul M Richardson; Edward F DeLong
Journal:  Science       Date:  2004-09-03       Impact factor: 47.728

8.  Shotgun library construction for DNA sequencing.

Authors:  Bruce A Roe
Journal:  Methods Mol Biol       Date:  2004

9.  Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring.

Authors:  Mostafa S Elshahed; Fares Z Najar; Bruce A Roe; Aharon Oren; Thomas A Dewers; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

10.  Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring.

Authors:  Mostafa S Elshahed; John M Senko; Fares Z Najar; Stephen M Kenton; Bruce A Roe; Thomas A Dewers; John R Spear; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792
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  17 in total

1.  Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1.

Authors:  Sari Peura; Alexander Eiler; Stefan Bertilsson; Hannu Nykänen; Marja Tiirola; Roger I Jones
Journal:  ISME J       Date:  2012-03-15       Impact factor: 10.302

2.  Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil.

Authors:  Xiaoqing Wang; Christine E Sharp; Gareth M Jones; Stephen E Grasby; Allyson L Brady; Peter F Dunfield
Journal:  Appl Environ Microbiol       Date:  2015-05-01       Impact factor: 4.792

3.  Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.

Authors:  Noha Youssef; Cody S Sheik; Lee R Krumholz; Fares Z Najar; Bruce A Roe; Mostafa S Elshahed
Journal:  Appl Environ Microbiol       Date:  2009-06-26       Impact factor: 4.792

4.  A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer.

Authors:  Thomas M Gihring; Gengxin Zhang; Craig C Brandt; Scott C Brooks; James H Campbell; Susan Carroll; Craig S Criddle; Stefan J Green; Phil Jardine; Joel E Kostka; Kenneth Lowe; Tonia L Mehlhorn; Will Overholt; David B Watson; Zamin Yang; Wei-Min Wu; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

5.  Cataloguing the bacterial community of the Great Salt Plains, Oklahoma using 16S rRNA based metagenomics pyrosequencing.

Authors:  Ahmed H Gad
Journal:  Genom Data       Date:  2017-03-08

6.  The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1).

Authors:  Rosa León-Zayas; Logan Peoples; Jennifer F Biddle; Sheila Podell; Mark Novotny; James Cameron; Roger S Lasken; Douglas H Bartlett
Journal:  Environ Microbiol       Date:  2017-06-22       Impact factor: 5.491

7.  Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.

Authors:  Sheree Yau; Federico M Lauro; Timothy J Williams; Matthew Z Demaere; Mark V Brown; John Rich; John Ae Gibson; Ricardo Cavicchioli
Journal:  ISME J       Date:  2013-04-25       Impact factor: 10.302

8.  Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.

Authors:  Mostafa S Elshahed; Noha H Youssef; Qingwei Luo; Fares Z Najar; Bruce A Roe; Tracy M Sisk; Solveig I Bühring; Kai-Uwe Hinrichs; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2007-06-01       Impact factor: 4.792

9.  Unraveling assembly of stream biofilm communities.

Authors:  Katharina Besemer; Hannes Peter; Jürg B Logue; Silke Langenheder; Eva S Lindström; Lars J Tranvik; Tom J Battin
Journal:  ISME J       Date:  2012-01-12       Impact factor: 10.302

10.  The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle.

Authors:  William C Nelson; James C Stegen
Journal:  Front Microbiol       Date:  2015-07-21       Impact factor: 5.640
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