| Literature DB >> 21760914 |
Yin-Ping Zhang1, Yao-Zhong Liu, Yan Guo, Xiao-Gang Liu, Xiang-Hong Xu, Yan-Fang Guo, Yuan Chen, Feng Zhang, Feng Pan, Xue-Zhen Zhu, Hong-Wen Deng.
Abstract
INTRODUCTION: Hip OF carries the highest morbidity and mortality. Previous studies revealed that individual genes/loci in the Tumor Necrosis Factor (TNF)-Related Apoptosis-Inducing Ligand (TRAIL) pathway were associated with bone metabolism. This study aims to verify the potential association between hip OF and TRAIL pathway.Entities:
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Year: 2011 PMID: 21760914 PMCID: PMC3132733 DOI: 10.1371/journal.pone.0021835
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of the study subjects.
| Case (n = 350) | Control (n = 350) | |
| Age (years) | 69.35 (7.41) | 69.54 (6.09) |
| Weight (kg) | 59.15 (12.05) | 59.61 (10.84) |
| Height (cm) | 162.84 (8.31) | 159.41 (9.20) |
Note: Data are shown as mean (standard deviation).
Component genes in the TRAIL pathway.
| Gene Symbol | Gene ID | Genome Location | Full name | Protein Name |
| APAF1 | 317 | 12q23 | apoptotic peptidase activating factor 1 | APAF1 |
| BID | 637 | 22q11.1 | BH3 interacting domain death agonist | BID |
| CBL | 867 | 11q23.3 | Cas-Br-M (murine) ecotropic retroviral transforming sequence | c-Cbl |
| REL | 5966 | 2p13-p12 | v-rel reticuloendotheliosis viral oncogene homolog (avian) | c-Rel |
| CASP3 | 836 | 4q34 | caspase 3, apoptosis-related cysteine peptidase | Caspase3 |
| CASP8 | 841 | 2q33-q34 | caspase 8, apoptosis-related cysteine peptidase | Caspase8 |
| CASP9 | 842 | 1p36.21 | caspase 9, apoptosis-related cysteine peptidase | Caspase9 |
| CYCS | 54205 | 7p15.3 | cytochrome c, somatic | CytoC |
| DAP3 | 7818 | 1q22 | death associated protein 3 | DAP3 |
| TNFRSF10C | 8794 | 8p22-p21 | tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain | DCRI |
| TNFRSF10D | 8793 | 8p21 | tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain | DCR2 |
| FADD | 8772 | 11q13.3 | Fas (TNFRSF6)-associated via death domain | FADD |
| CFLAR | 8837 | 2q33-q34 | CASP8 and FADD-like apoptosis regulator | c-FLIP, FLIP |
| NFKBIA | 4792 | 14q13 | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | I-KappaB-Alpha |
| NFKBIB | 4793 | 19q13.1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta | I-KappaB-Beta |
| NFKBIE | 4794 | 6p21.1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon | I-KappaB-Epsilon |
| CHUK | 1147 | 10q24-q25 | conserved helix-loop-helix ubiquitous kinase | IKK-Alpha |
| IKBKB | 3551 | 8p11.2 | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta | IKK-Beta |
Note: (1) TRAIL, TNF-Related Apoptosis-Inducing Ligand.
(2) The Gene ID was retrieved from NCBI GenBank (http://www.ncbi.nlm.nih.gov/Genbank/).
Association Results for the SNPs of Top Significance for Each Gene in the TRAIL Pathway.
| Gene | SNP | Chr. | Physical location | Role | P value | Allele | MAF | OR (95%CI) |
| APAF1 | - | 12 | - | - | - | - | - | - |
| BID | rs424708 | 22 | 16588746 | Downstream | 0.07899 | C | 0.012 | 0.35 (0.11–1.13) |
| CBL | rs4938638 | 11 | 118580639 | Downstream | 0.3039 | C | 0.127 | 0.84 (0.60–1.17) |
| REL | rs842627 | 2 | 60994311 | Downstream | 0.08129 | A | 0.127 | 1.38 (0.96–1.99) |
| CASP3 | rs4862379 | 4 | 185849707 | Downstream | 0.1001 | C | 0.081 | 1.40 (0.94–2.09) |
| CASP8 | rs6723097 | 2 | 201954124 | Intron | 0.4147 | C | 0.468 | 0.91 (0.73–1.14) |
| CASP9 | rs2042369 | 1 | 15715831 | Intron | 0.1818 | A | 0.039 | 0.66 (0.36–1.22) |
| CYCS | rs10239907 | 7 | 24905619 | Upstream | 0.1457 | C | 0.290 | 1.20 (0.94–1.53) |
| DAP3 | rs821551 | 1 | 152501653 | Intron | 0.3871 | A | 0.180 | 0.88 (0.67–1.17) |
| TNFRSF10C | rs10111172 | 8 | 23025036 | Intron | 0.24 | C | 0.173 | 0.84 (0.64–1.12) |
| TNFRSF10D | rs4278155 | 8 | 23052724 | Intron | 0.4 | C | 0.441 | 0.91 (0.73–1.13) |
| FADD | rs11604809 | 11 | 69722984 | Downstream | 0.9726 | C | 0.466 | 1.00 (0.81–1.23) |
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| NFKBIA | rs10132268 | 14 | 35017365 | Upstream | 0.1129 | A | 0.431 | 1.19 (0.96–1.46) |
| NFKBIB | rs2241704 | 19 | 44088175 | Intron | 0.9237 | A | 0.120 | 0.98 (0.71–1.37) |
| NFKBIE | - | 6 | - | - | - | - | - | |
| CHUK | rs7909855 | 10 | 101957202 | Intron | 0.2635 | C | 0.460 | 0.88 (0.70–1.10) |
| IKBKB | rs10094577 | 8 | 42206733 | Upstream | 0.4423 | C | 0.013 | 0.68 (0.25–1.83) |
| IKBKE | rs2871360 | 1 | 203065616 | Downstream | 0.2916 | C | 0.428 | 0.89 (0.71–1.11) |
| IKBKG | - | X | - | - | - | - | - | |
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| NFKB2 | rs11574851 | 10 | 104150949 | Coding exon | 0.4637 | C | 0.058 | 1.20 (0.74–1.96) |
| TNFRSF11B | rs7816831 | 8 | 119792244 | Upstream | 0.07085 | C | 0.201 | 1.29 (0.98–1.69) |
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| PARP1 | rs3219058 | 1 | 222879529 | Intron | 0.1564 | C | 0.318 | 0.85 (0.67–1.07) |
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| RELA | rs1466462 | 11 | 65175940 | Intron | 0.7124 | A | 0.193 | 0.95 (0.72–1.25) |
| RELB | - | 19 | - | - | - | - | - | |
| DIABLO | - | 12 | - | - | - | - | - | |
| TRAF1 | rs2416804 | 9 | 120755950 | Intron | 0.7757 | C | 0.472 | 1.03 (0.83–1.28) |
Note: (1) The SNPs significantly associated with hip OF are shown in bold.
(2) aMinor allele of each SNP.
(3) bMinor allele frequency calculated in our sample.
(4) cPer-allele effect size of the minor allele is expressed by odds ratio (OR) and the 95% confidence interval of OR.
Figure 1TRAIL pathway and the gene-gene interaction.
The binding of TRAIL to TRAILR2 may induce the apoptosis of osteoclast. Increased c-FLIP levels may decrease the apoptosis of Osteoclast. The osteoclast apoptosis signal transduced by TRAIL/TRAILR2 was transformed to activate NF-κB. A key step in downstream signaling of RANKL/RANK is binding of TRAFs to RANK. Stimulation of RANK also results in strong NF-κB activation. NF-κB1(p50) is an important signal for osteoclast development and osteoclast function.