| Literature DB >> 25019155 |
Jun Yin1, Liming Wang2, Weifeng Tang1, Xu Wang1, Lu Lv1, Aizhong Shao1, Yijun Shi1, Guowen Ding1, Suocheng Chen1, Haiyong Gu1.
Abstract
Esophageal cancer remains the sixth leading cause of cancer associated death and eighth most common cancer worldwide. Genetic factors, such as single nucleotide polymorphisms (SNPs), may contribute to the carcinogenesis of esophageal cancer. Here, we conducted a hospital based case-control study to evaluate the genetic susceptibility of functional SNPs on the development of esophageal cancer. A total of 629 esophageal squamous cell carcinoma (ESCC) cases and 686 controls were enrolled for this study. The OPG rs3102735 T>C, rs2073618 G>C, RANK rs1805034 T>C, RANKL rs9533156 T>C and rs2277438 A>G were determined by ligation detection reaction method. Our findings suggested that RANK rs1805034 T>C is associated with the susceptibility of ESCC, which is more evident in male and elder (≥63) patients. Our study provides the first evidence that functional polymorphisms RANK rs1805034 T>C may be an indicator for individual susceptibility to ESCC. However, further larger studies among different ethnic populations are warranted to verify our conclusion.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25019155 PMCID: PMC4096509 DOI: 10.1371/journal.pone.0101705
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Distribution of selected demographic variables and risk factors in ESCC cases and controls.
| Variable | Cases (n = 629) | Controls (n = 686) |
| ||
| n | % | n | % | ||
|
| 62.85 (±8.13) | 62.58 (±7.89) | 0.541 | ||
|
| 0.155 | ||||
| <63 | 310 | 49.28 | 365 | 53.21 | |
| ≥63 | 319 | 50.72 | 321 | 46.79 | |
|
| 0.185 | ||||
| Male | 444 | 70.59 | 461 | 67.20 | |
| Female | 185 | 29.41 | 225 | 32.80 | |
|
|
| ||||
| Never | 355 | 56.44 | 499 | 72.74 | |
| Ever | 274 | 43.56 | 187 | 27.26 | |
|
|
| ||||
| Never | 428 | 68.04 | 526 | 76.68 | |
| Ever | 201 | 31.96 | 160 | 23.32 | |
Two-sided χ 2 test and student t test; Bold values are statistically significant (p<0.05).
Primary information for OPG rs3102735 T>C, rs2073618 G>C, RANK rs1805034 T>C, RANKL rs9533156 T>C and rs2277438 A>G polymorphisms.
| Genotyped SNPs |
|
|
|
|
|
| Chromosome | 8 | 8 | 18 | 13 | 13 |
| Gene Official Symbol | TNFRSF11B | TNFRSF11B | TNFRSF11A | TNFSF11 | TNFSF11 |
| Function | nearGene-5 | missense | missense | missense | intron region |
| Chr Pos (Genome Build 36.3) | 120034251 | 120033233 | 58178221 | 42045671 | 42053168 |
| Regulome DB Score | 5 | 4 | 5 | 5 | No Data |
| TFBS | Y | — | — | — | — |
| Splicing (ESE or ESS) | — | Y | Y | — | — |
| miRNA (miRanda) | — | — | — | — | — |
| miRNA (Sanger) | — | — | — | — | — |
| MAF | 0.134 | 0.308 | 0.300 | 0.439 | 0.300 |
| MAF in our controls (n = 686) | 0.164 | 0.263 | 0.286 | 0.464 | 0.314 |
|
| 0.191 | 0.371 | 0.531 | 0.488 | 0.700 |
| Genotyping method | LDR | LDR | LDR | LDR | LDR |
| % Genotyping value | 95.13% | 96.35% | 96.43% | 96.43% | 96.81% |
http://www.regulomedb.org/;
TFBS: Transcription Factor Binding Site (http://snpinfo.niehs.nih.gov/snpinfo/snpfunc.htm);
MAF: minor allele frequency, OPG rs2073618 G>C MAF is in CHB+JPT population;
HWE: Hardy–Weinberg equilibrium;
LDR: Ligation Detection Reaction.
Logistic regression analyses of associations between OPG rs3102735 T>C, rs2073618 G>C, RANK rs1805034 T>C, RANKL rs9533156 T>C and rs2277438 A>G polymorphisms and risk of ESCC.
| Genotype | Cases (n = 629) | Controls (n = 686) | Crude OR (95%CI) |
| Adjusted OR |
| ||
| n | % | n | % | |||||
|
| ||||||||
| TT | 442 | 73.7 | 450 | 69.1 | 1.00 | 1.00 | ||
| TC | 146 | 24.3 | 188 | 28.9 | 0.79 (0.61–1.02) | 0.069 | 0.78 (0.61–1.02) | 0.065 |
| CC | 12 | 2.0 | 13 | 2.0 | 0.94 (0.42–2.08) | 0.878 | 0.97 (0.43–2.19) | 0.945 |
| TC+CC | 158 | 26.3 | 201 | 30.9 | 0.80 (0.63–1.02) | 0.076 | 0.80 (0.62–1.02) | 0.075 |
| TT+TC | 588 | 98.0 | 638 | 98.0 | 1.00 | 1.00 | ||
| CC | 12 | 2.0 | 13 | 2.0 | 1.00 (0.45–2.21) | 0.997 | 1.04 (0.46–2.34) | 0.928 |
| T allele | 1030 | 85.8 | 1088 | 83.6 | 1.00 | |||
| C allele | 170 | 14.2 | 214 | 16.4 | 0.84 (0.67–1.04) | 0.116 | ||
|
| ||||||||
| GG | 345 | 56.6 | 361 | 54.9 | 1.00 | 1.00 | ||
| GC | 222 | 36.4 | 246 | 37.4 | 0.94 (0.75–1.19) | 0.631 | 0.96 (0.75–1.21) | 0.702 |
| CC | 43 | 7.0 | 50 | 7.6 | 0.90 (0.58–1.39) | 0.634 | 0.85 (0.55–1.32) | 0.476 |
| GC+CC | 265 | 43.4 | 296 | 45.1 | 0.94 (0.75–1.17) | 0.564 | 0.94 (0.75–1.17) | 0.570 |
| GG+GC | 567 | 93.0 | 607 | 92.4 | 1.00 | 1.00 | ||
| CC | 43 | 7.0 | 50 | 7.6 | 0.92 (0.60–1.41) | 0.703 | 0.87 (0.56–1.34) | 0.518 |
| G allele | 912 | 74.8 | 968 | 73.7 | 1.00 | |||
| C allele | 308 | 25.2 | 346 | 26.3 | 0.95 (0.79–1.13) | 0.533 | ||
|
| ||||||||
| TT | 282 | 45.9 | 330 | 50.5 | 1.00 | 1.00 | ||
| TC | 264 | 42.9 | 273 | 41.8 | 1.13 (0.90–1.43) | 0.296 | 1.16 (0.91–1.47) | 0.231 |
| CC | 69 | 11.2 | 50 | 7.7 |
|
|
|
|
| TC+CC | 333 | 54.1 | 323 | 49.5 | 1.21 (0.97–1.50) | 0.096 | 1.23 (0.98–1.54) | 0.073 |
| TT+TC | 546 | 88.8 | 603 | 92.3 | 1.00 | 1.00 | ||
| CC | 69 | 11.2 | 50 | 7.7 |
|
|
|
|
| T allele | 828 | 67.3 | 933 | 71.4 | 1.00 | |||
| C allele | 402 | 32.7 | 373 | 28.6 |
|
| ||
|
| ||||||||
| TT | 175 | 28.5 | 192 | 29.4 | 1.00 | 1.00 | ||
| TC | 305 | 49.6 | 316 | 48.4 | 1.04 (0.78–1.38) | 0.803 | 1.07 (0.80–1.42) | 0.656 |
| CC | 135 | 22.0 | 145 | 22.2 | 0.98 (0.72–1.34) | 0.894 | 1.06 (0.77–1.46) | 0.708 |
| TC+CC | 440 | 71.5 | 461 | 70.6 | 1.02 (0.78–1.32) | 0.913 | 1.07 (0.81–1.40) | 0.645 |
| TT+TC | 480 | 78.0 | 508 | 77.8 | 1.00 | 1.00 | ||
| CC | 135 | 22.0 | 145 | 22.2 | 0.96 (0.75–1.22) | 0.710 | 1.02 (0.79–1.30) | 0.903 |
| T allele | 655 | 53.3 | 700 | 53.6 | 1.00 | |||
| C allele | 575 | 46.7 | 606 | 46.4 | 1.01 (0.87–1.19) | 0.861 | ||
|
| ||||||||
| AA | 277 | 46.2 | 315 | 46.8 | 1.00 | 1.00 | ||
| AG | 259 | 43.2 | 294 | 43.7 | 1.00 (0.79–1.26) | 0.988 | 1.00 (0.79–1.26) | 0.981 |
| GG | 64 | 10.7 | 64 | 9.5 | 1.14 (0.78–1.67) | 0.509 | 1.19 (0.80–1.75) | 0.393 |
| AG+GG | 323 | 53.8 | 358 | 53.2 | 1.03 (0.82–1.28) | 0.820 | 1.03 (0.82–1.29) | 0.796 |
| AA+AG | 536 | 89.3 | 609 | 90.5 | 1.00 | 1.00 | ||
| GG | 64 | 10.7 | 64 | 9.5 | 1.14 (0.79–1.64) | 0.493 | 1.19 (0.82–1.73) | 0.367 |
| A allele | 813 | 67.8 | 924 | 68.6 | 1.00 | |||
| G allele | 387 | 32.3 | 422 | 31.4 | 1.04 (0.88–1.23) | 0.627 | ||
Adjusted for age, sex, smoking status and alcohol consumption.
Stratified analyses between RANK rs1805034 T>C polymorphism and ESCC risk by sex, age, smoking status and alcohol consumption.
| Variable |
| Adjusted OR | |||||||
| TT | TC | CC | TC+CC | TT | TC | CC | TC+CC | CC vs. (TT+TC) | |
| Sex | |||||||||
| Male | 193/227 | 189/178 | 52/33 | 241/211 | 1.00 | 1.28 (0.96–1.71); |
|
|
|
| Female | 89/103 | 75/95 | 17/17 | 92/112 | 1.00 | 0.93 (0.62–1.42); | 1.22 (0.59–2.55); | 0.98 (0.66–1.46); | 1.26 (0.62–2.56); |
| Age | |||||||||
| <63 | 131/161 | 136/152 | 34/28 | 170/180 | 1.00 | 1.11 (0.79–1.55); | 1.48 (0.83–2.61); | 1.16 (0.84–1.61); | 1.40 (0.81–2.42); |
| ≥63 | 151/169 | 128/121 | 35/22 | 163/143 | 1.00 | 1.18 (0.84–1.65); |
| 1.28 (0.93–1.76); | 1.71 (0.97–3.03); |
| Smoking status | |||||||||
| Never | 159/234 | 149/204 | 36/37 | 185/241 | 1.00 | 1.06 (0.79–1.43); | 1.37 (0.82–2.30); | 1.11 (0.84–1.47); | 1.33 (0.81–2.19); |
| Ever | 123/96 | 115/69 | 33/13 | 148/82 | 1.00 | 1.22 (0.81–1.84); | 1.89 (0.93–3.84); | 1.32 (0.90–1.95); | 1.73 (0.87–3.43); |
| Alcohol consumption | |||||||||
| Never | 190/248 | 180/215 | 45/38 | 225/253 | 1.00 | 1.09 (0.82–1.45); | 1.52 (0.93–2.48); | 1.16 (0.88–1.51); | 1.46 (0.91–2.33); |
| Ever | 92/82 | 84/58 | 24/12 | 108/70 | 1.00 | 1.16 (0.73–1.84); | 1.65 (0.76–3.60); | 1.24 (0.80–1.92); | 1.54 (0.73–3.28); |
The genotyping was successful in 615 (97.8%) ESCC cases, and 653 (95.2%) controls for RANK rs1805034 T>C;
Adjusted for age, sex, smoking status and alcohol consumption (besides stratified factors accordingly) in a logistic regression model;
p h for heterogeneity.