Literature DB >> 21754778

Ethyl 8-amino-6-bromoimidazo[1,2-a]pyridine-2-carb-oxy-late.

Siham Dahmani, Youssef Kandri Rodi, Santiago V Luis, El Mokhtar Essassi, Lahcen El Ammari.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(10)H(10)BrN(3)O(2), which are linked by N-H⋯O and C-H⋯O hydrogen bonds. The fused ring systems in both mol-ecules are nearly planar with maximum deviations of 0.001 (3) and 0.029 (3) Å. All non-H atoms of the first mol-ecule are approximately co-planar whereas in the second mol-ecule, the ethyl group is almost perpendicular to the imidazo[1,2-a]pyridine system, the C-O-C-C torsion angles in the carb-oxy-lic acid ethyl group being -179.8 (4) and 112.1 (5)°, respectively.

Entities:  

Year:  2011        PMID: 21754778      PMCID: PMC3120515          DOI: 10.1107/S1600536811017077

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of imidazo[1,2-a]pyridine derivatives, see: Anderson et al. (2003 ▶); Trapani et al. (2003 ▶); Gueiffier et al. (1998 ▶); Mavel et al. (2002 ▶). For their pharmacological activity, see: Rival et al. (1992 ▶); Rupert et al. (2003 ▶); Katritzky et al. (2003 ▶).

Experimental

Crystal data

C10H10BrN3O2 M = 284.12 Monoclinic, a = 8.366 (2) Å b = 11.842 (3) Å c = 22.743 (5) Å β = 98.328 (6)° V = 2229.3 (8) Å3 Z = 8 Mo Kα radiation μ = 3.68 mm−1 T = 292 K 0.44 × 0.19 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.437, T max = 0.535 13222 measured reflections 4555 independent reflections 3156 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.03 4555 reflections 291 parameters H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017077/dn2683sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017077/dn2683Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017077/dn2683Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10BrN3O2F(000) = 1136
Mr = 284.12Dx = 1.693 Mg m3
Monoclinic, P21/cMelting point: 414(2) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 8.366 (2) ÅCell parameters from 4555 reflections
b = 11.842 (3) Åθ = 1.8–26.8°
c = 22.743 (5) ŵ = 3.68 mm1
β = 98.328 (6)°T = 292 K
V = 2229.3 (8) Å3Fiber, yellow
Z = 80.44 × 0.19 × 0.17 mm
Bruker APEXII CCD diffractometer4555 independent reflections
Radiation source: fine-focus sealed tube3156 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 26.8°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.437, Tmax = 0.535k = −11→14
13222 measured reflectionsl = −24→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0571P)2 + 1.0629P] where P = (Fo2 + 2Fc2)/3
4555 reflections(Δ/σ)max = 0.001
291 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6311 (4)0.1790 (2)0.24000 (15)0.0364 (7)
C20.5137 (4)0.1042 (3)0.20858 (16)0.0424 (8)
C30.3848 (4)0.0737 (3)0.23542 (17)0.0463 (8)
H30.30730.02480.21620.056*
C40.3685 (4)0.1156 (3)0.29203 (17)0.0457 (8)
C50.4772 (4)0.1854 (3)0.32284 (16)0.0458 (8)
H50.46510.21140.36050.055*
C60.7346 (4)0.2859 (3)0.31519 (15)0.0407 (7)
H60.75310.32440.35120.049*
C70.8290 (4)0.2868 (3)0.27069 (15)0.0399 (7)
C80.9804 (4)0.3528 (3)0.27430 (17)0.0442 (8)
C91.2055 (5)0.4046 (4)0.2303 (2)0.0646 (11)
H9A1.28050.38410.26530.078*
H9B1.18150.48450.23270.078*
C101.2790 (6)0.3820 (4)0.1765 (2)0.0738 (13)
H10A1.37550.42630.17750.111*
H10B1.20410.40180.14200.111*
H10C1.30560.30330.17500.111*
N10.6074 (3)0.2165 (2)0.29548 (13)0.0391 (6)
N20.7654 (3)0.2206 (2)0.22339 (12)0.0387 (6)
N30.5421 (4)0.0657 (3)0.15447 (15)0.0609 (9)
H3A0.46340.03380.13200.073*
H3B0.60480.10430.13510.073*
O11.0571 (3)0.33902 (19)0.22826 (11)0.0493 (6)
O21.0266 (3)0.4127 (2)0.31636 (13)0.0619 (7)
Br10.18490 (5)0.07406 (4)0.32785 (2)0.06942 (17)
C110.8701 (4)0.5979 (3)0.45987 (15)0.0382 (7)
C120.9608 (4)0.6732 (3)0.42770 (16)0.0422 (8)
C131.0265 (4)0.7670 (3)0.45760 (17)0.0472 (8)
H131.07980.82090.43790.057*
C141.0129 (4)0.7813 (3)0.51807 (17)0.0450 (8)
C150.9362 (4)0.7088 (3)0.54986 (17)0.0462 (8)
H150.93240.71950.59010.055*
C160.7710 (4)0.5322 (3)0.53803 (16)0.0418 (8)
H160.74590.52140.57620.050*
C170.7243 (3)0.4671 (3)0.48894 (15)0.0367 (7)
C180.6206 (4)0.3662 (3)0.48367 (16)0.0432 (8)
C190.4773 (5)0.2335 (4)0.5359 (2)0.0772 (14)
H19A0.39260.25370.55900.093*
H19B0.42720.21810.49560.093*
C200.5572 (7)0.1346 (5)0.5605 (4)0.118 (2)
H20A0.47900.07660.56380.177*
H20B0.61470.15140.59910.177*
H20C0.63200.10910.53510.177*
N40.8630 (3)0.6170 (2)0.51890 (13)0.0399 (6)
N50.7852 (3)0.5068 (2)0.43990 (12)0.0400 (6)
N60.9732 (4)0.6470 (3)0.37068 (14)0.0565 (8)
H6A1.03180.68770.35120.068*
H6B0.94940.57900.36050.068*
O30.5891 (3)0.3286 (2)0.53566 (12)0.0551 (6)
O40.5670 (3)0.3250 (3)0.43682 (13)0.0718 (8)
Br21.11787 (5)0.90661 (3)0.55921 (2)0.06673 (16)
U11U22U33U12U13U23
C10.0447 (17)0.0342 (16)0.0290 (19)0.0055 (13)0.0002 (13)−0.0018 (13)
C20.0483 (19)0.0406 (18)0.036 (2)0.0027 (14)−0.0025 (15)−0.0035 (14)
C30.0489 (19)0.0436 (19)0.043 (2)−0.0036 (14)−0.0038 (15)−0.0022 (15)
C40.0421 (18)0.0477 (19)0.048 (2)−0.0002 (14)0.0078 (15)−0.0012 (16)
C50.0481 (19)0.052 (2)0.039 (2)−0.0039 (15)0.0119 (15)−0.0082 (16)
C60.0470 (18)0.0433 (18)0.032 (2)−0.0051 (14)0.0057 (14)−0.0103 (14)
C70.0445 (18)0.0396 (17)0.035 (2)0.0010 (13)0.0038 (14)−0.0032 (14)
C80.050 (2)0.0431 (19)0.039 (2)0.0005 (15)0.0071 (15)−0.0031 (15)
C90.050 (2)0.071 (3)0.075 (3)−0.0188 (18)0.015 (2)−0.014 (2)
C100.073 (3)0.076 (3)0.076 (4)−0.017 (2)0.022 (2)0.002 (2)
N10.0401 (14)0.0400 (14)0.0370 (18)0.0004 (11)0.0050 (11)−0.0060 (12)
N20.0459 (15)0.0400 (14)0.0299 (16)0.0022 (11)0.0046 (11)−0.0048 (11)
N30.071 (2)0.074 (2)0.036 (2)−0.0150 (16)0.0027 (15)−0.0158 (15)
O10.0495 (13)0.0516 (14)0.0492 (17)−0.0087 (10)0.0148 (11)−0.0136 (11)
O20.0700 (17)0.0704 (18)0.0464 (18)−0.0226 (13)0.0126 (13)−0.0225 (14)
Br10.0567 (3)0.0777 (3)0.0779 (4)−0.01732 (19)0.0233 (2)−0.0092 (2)
C110.0426 (17)0.0423 (17)0.0292 (19)0.0124 (14)0.0030 (13)0.0034 (14)
C120.0444 (18)0.0447 (19)0.037 (2)0.0086 (14)0.0035 (14)0.0056 (15)
C130.052 (2)0.0419 (19)0.048 (2)0.0031 (15)0.0075 (16)0.0079 (16)
C140.0484 (19)0.0375 (17)0.047 (2)0.0041 (14)−0.0003 (15)−0.0022 (15)
C150.056 (2)0.0454 (19)0.035 (2)0.0031 (15)0.0003 (15)−0.0051 (15)
C160.0446 (18)0.0478 (19)0.033 (2)0.0039 (14)0.0062 (14)0.0050 (15)
C170.0349 (15)0.0437 (17)0.032 (2)0.0073 (13)0.0047 (13)−0.0007 (14)
C180.0396 (17)0.0526 (19)0.038 (2)0.0056 (14)0.0075 (15)−0.0054 (16)
C190.067 (3)0.074 (3)0.089 (4)−0.018 (2)0.006 (2)0.017 (3)
C200.096 (4)0.076 (4)0.183 (8)−0.014 (3)0.026 (4)0.027 (4)
N40.0433 (15)0.0402 (15)0.0352 (18)0.0041 (11)0.0024 (12)−0.0005 (11)
N50.0412 (14)0.0463 (15)0.0318 (17)0.0057 (12)0.0029 (11)0.0002 (12)
N60.081 (2)0.0522 (18)0.039 (2)−0.0051 (15)0.0172 (15)0.0063 (14)
O30.0587 (15)0.0573 (15)0.0489 (18)−0.0115 (12)0.0064 (12)0.0049 (12)
O40.0805 (19)0.088 (2)0.049 (2)−0.0289 (16)0.0165 (14)−0.0289 (15)
Br20.0787 (3)0.0502 (2)0.0698 (3)−0.01168 (19)0.0056 (2)−0.01129 (19)
C1—N21.331 (4)C11—N51.335 (4)
C1—N11.379 (4)C11—N41.371 (4)
C1—C21.434 (4)C11—C121.437 (5)
C2—C31.363 (5)C12—N61.352 (4)
C2—N31.365 (5)C12—C131.376 (5)
C3—C41.405 (5)C13—C141.407 (5)
C3—H30.9300C13—H130.9300
C4—C51.348 (5)C14—C151.344 (5)
C4—Br11.904 (3)C14—Br21.900 (3)
C5—N11.380 (4)C15—N41.389 (4)
C5—H50.9300C15—H150.9300
C6—N11.368 (4)C16—C171.367 (5)
C6—C71.371 (5)C16—N41.374 (4)
C6—H60.9300C16—H160.9300
C7—N21.374 (4)C17—N51.375 (4)
C7—C81.480 (5)C17—C181.472 (5)
C8—O21.209 (4)C18—O41.199 (4)
C8—O11.315 (4)C18—O31.325 (4)
C9—O11.460 (4)C19—C201.422 (7)
C9—C101.471 (6)C19—O31.464 (5)
C9—H9A0.9700C19—H19A0.9700
C9—H9B0.9700C19—H19B0.9700
C10—H10A0.9600C20—H20A0.9600
C10—H10B0.9600C20—H20B0.9600
C10—H10C0.9600C20—H20C0.9600
N3—H3A0.8604N6—H6A0.8550
N3—H3B0.8634N6—H6B0.8530
N2—C1—N1112.3 (3)N5—C11—N4111.7 (3)
N2—C1—C2129.3 (3)N5—C11—C12128.5 (3)
N1—C1—C2118.4 (3)N4—C11—C12119.8 (3)
C3—C2—N3124.6 (3)N6—C12—C13125.3 (3)
C3—C2—C1118.0 (3)N6—C12—C11117.8 (3)
N3—C2—C1117.3 (3)C13—C12—C11116.9 (3)
C2—C3—C4120.3 (3)C12—C13—C14119.8 (3)
C2—C3—H3119.8C12—C13—H13120.1
C4—C3—H3119.8C14—C13—H13120.1
C5—C4—C3123.1 (3)C15—C14—C13124.2 (3)
C5—C4—Br1117.5 (3)C15—C14—Br2117.1 (3)
C3—C4—Br1119.5 (3)C13—C14—Br2118.6 (3)
C4—C5—N1116.5 (3)C14—C15—N4115.9 (3)
C4—C5—H5121.7C14—C15—H15122.0
N1—C5—H5121.7N4—C15—H15122.0
N1—C6—C7105.5 (3)C17—C16—N4105.1 (3)
N1—C6—H6127.3C17—C16—H16127.4
C7—C6—H6127.3N4—C16—H16127.4
C6—C7—N2112.0 (3)C16—C17—N5112.0 (3)
C6—C7—C8122.9 (3)C16—C17—C18128.3 (3)
N2—C7—C8125.1 (3)N5—C17—C18119.7 (3)
O2—C8—O1124.4 (3)O4—C18—O3124.0 (3)
O2—C8—C7121.8 (3)O4—C18—C17122.9 (3)
O1—C8—C7113.8 (3)O3—C18—C17113.0 (3)
O1—C9—C10109.4 (3)C20—C19—O3111.7 (4)
O1—C9—H9A109.8C20—C19—H19A109.3
C10—C9—H9A109.8O3—C19—H19A109.3
O1—C9—H9B109.8C20—C19—H19B109.3
C10—C9—H9B109.8O3—C19—H19B109.3
H9A—C9—H9B108.2H19A—C19—H19B107.9
C9—C10—H10A109.5C19—C20—H20A109.5
C9—C10—H10B109.5C19—C20—H20B109.5
H10A—C10—H10B109.5H20A—C20—H20B109.5
C9—C10—H10C109.5C19—C20—H20C109.5
H10A—C10—H10C109.5H20A—C20—H20C109.5
H10B—C10—H10C109.5H20B—C20—H20C109.5
C6—N1—C1106.6 (3)C11—N4—C16107.2 (3)
C6—N1—C5129.8 (3)C11—N4—C15123.2 (3)
C1—N1—C5123.7 (3)C16—N4—C15129.6 (3)
C1—N2—C7103.7 (3)C11—N5—C17104.0 (3)
C2—N3—H3A117.6C12—N6—H6A119.8
C2—N3—H3B118.9C12—N6—H6B115.4
H3A—N3—H3B113.5H6A—N6—H6B121.3
C8—O1—C9114.8 (3)C18—O3—C19118.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N5i0.862.473.300 (4)161
N3—H3B···O3ii0.862.383.055 (5)135
N6—H6B···O20.852.343.096 (4)147
N6—H6A···O1iii0.862.583.183 (4)129
N6—H6A···N2iii0.862.603.388 (4)154
C5—H5···O40.932.263.074 (4)146
C19—H19B···O40.972.282.703 (6)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N5i0.862.473.300 (4)161
N3—H3B⋯O3ii0.862.383.055 (5)135
N6—H6B⋯O20.852.343.096 (4)147
N6—H6A⋯O1iii0.862.583.183 (4)129
N6—H6A⋯N2iii0.862.603.388 (4)154
C5—H5⋯O40.932.263.074 (4)146

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  Synthesis and antibacterial activity of some imidazo[1,2-a]pyrimidine derivatives.

Authors:  Y Rival; G Grassy; G Michel
Journal:  Chem Pharm Bull (Tokyo)       Date:  1992-05       Impact factor: 1.645

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of imidazo[1,2-a]pyridines as antiviral agents.

Authors:  A Gueiffier; S Mavel; M Lhassani; A Elhakmaoui; R Snoeck; G Andrei; O Chavignon; J C Teulade; M Witvrouw; J Balzarini; E De Clercq; J P Chapat
Journal:  J Med Chem       Date:  1998-12-03       Impact factor: 7.446

4.  Influence of 2-substituent on the activity of imidazo[1,2-a] pyridine derivatives against human cytomegalovirus.

Authors:  Sylvie Mavel; Jean-Louis Renou; Christophe Galtier; Hassan Allouchi; Robert Snoeck; Graciella Andrei; Erik De Clercq; Jan Balzarini; Alain Gueiffier
Journal:  Bioorg Med Chem       Date:  2002-04       Impact factor: 3.641

5.  Imidazo[1,2-a]pyridines: a potent and selective class of cyclin-dependent kinase inhibitors identified through structure-based hybridisation.

Authors:  Malcolm Anderson; John F Beattie; Gloria A Breault; Jason Breed; Kate F Byth; Janet D Culshaw; Rebecca P A Ellston; Stephen Green; Claire A Minshull; Richard A Norman; Richard A Pauptit; Judith Stanway; Andrew P Thomas; Philip J Jewsbury
Journal:  Bioorg Med Chem Lett       Date:  2003-09-15       Impact factor: 2.823

6.  Imidazopyrimidines, potent inhibitors of p38 MAP kinase.

Authors:  Kenneth C Rupert; James R Henry; John H Dodd; Scott A Wadsworth; Druie E Cavender; Gilbert C Olini; Bohumila Fahmy; John J Siekierka
Journal:  Bioorg Med Chem Lett       Date:  2003-02-10       Impact factor: 2.823

7.  Regiospecific synthesis of 3-substituted imidazo[1,2-a]pyridines, imidazo[1,2-a]pyrimidines, and imidazo[1,2-c]pyrimidine.

Authors:  Alan R Katritzky; Yong-Jiang Xu; Hongbin Tu
Journal:  J Org Chem       Date:  2003-06-13       Impact factor: 4.354

8.  Alpidem analogues containing a GABA or glycine moiety as new anticonvulsant agents.

Authors:  Giuseppe Trapani; Andrea Latrofa; Massimo Franco; Antonio Carrieri; Saverio Cellamare; Mariangela Serra; Enrico Sanna; Giovanni Biggio; Gaetano Liso
Journal:  Eur J Pharm Sci       Date:  2003-03       Impact factor: 4.384

  8 in total

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