Literature DB >> 21202173

Poly[diaqua-μ(2)-oxalato-di-μ(2)-pyrimidine-2-carboxyl-ato-dimanganese(II)].

Antonio Rodríguez-Diéguez, Hakima Aouryaghal, A J Mota, Enrique Colacio.   

Abstract

In the title compound, [Mn(2)(C(2)O(4))(C(5)H(3)N(2)O(2))(2)(H(2)O)(2)](n), the Mn(II) atom exhibits a distorted octa-hedral coordination geometry, with the centrosymmetric oxalate anion and the monoanionic pyrimidine-2-carboxyl-ate ligands generating a two-dimensional honeycomb network with a (6,3)-topology.

Entities:  

Year:  2008        PMID: 21202173      PMCID: PMC2961100          DOI: 10.1107/S1600536808002687

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of 2-cyano­pyrimidine, see: Rodríguez-Diéguez, Salinas-Castillo et al. (2007 ▶). For related literature, see: Rodríguez-Diéguez, Cano et al. (2007 ▶).

Experimental

Crystal data

[Mn2(C2O4)(C5H3N2O2)2(H2O)2] M = 480.12 Monoclinic, a = 7.5447 (7) Å b = 11.1944 (11) Å c = 9.7259 (10) Å β = 102.4220 (10)° V = 802.20 (14) Å3 Z = 2 Mo Kα radiation μ = 1.64 mm−1 T = 150 (2) K 0.22 × 0.21 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.714, T max = 0.773 (expected range = 0.665–0.720) 5847 measured reflections 1495 independent reflections 1389 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.062 S = 1.11 1495 reflections 127 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808002687/su2042sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808002687/su2042Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn2(C2O4)(C5H3N2O2)2(H2O)2]F000 = 480
Mr = 480.12Dx = 1.988 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3384 reflections
a = 7.5447 (7) Åθ = 2.8–28.9º
b = 11.1944 (11) ŵ = 1.64 mm1
c = 9.7259 (10) ÅT = 150 (2) K
β = 102.4220 (10)ºPrismatic, yellow
V = 802.20 (14) Å30.22 × 0.21 × 0.20 mm
Z = 2
Bruker SMART APEX CCD area-detector diffractometer1389 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
T = 150(2) Kθmax = 25.5º
φ and ω scansθmin = 2.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.714, Tmax = 0.774k = −13→13
5847 measured reflectionsl = −11→11
1495 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.062  w = 1/[σ2(Fo2) + (0.0274P)2 + 0.6516P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1495 reflectionsΔρmax = 0.41 e Å3
127 parametersΔρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.22294 (4)0.67224 (3)0.51301 (3)0.01810 (12)
N10.2376 (2)0.87496 (16)0.49706 (17)0.0170 (4)
C20.1555 (3)0.94939 (19)0.3937 (2)0.0224 (5)
H20.08500.91740.31170.027*
C30.1735 (3)1.07187 (19)0.4065 (2)0.0230 (5)
H30.11641.12300.33530.028*
C40.2805 (3)1.1150 (2)0.5301 (2)0.0229 (5)
H40.29291.19720.54280.027*
N50.3670 (2)1.04205 (16)0.63259 (18)0.0196 (4)
C60.3405 (3)0.92559 (18)0.6111 (2)0.0166 (4)
C70.4354 (3)0.83993 (18)0.7255 (2)0.0182 (4)
O80.3827 (2)0.73395 (13)0.71406 (16)0.0251 (4)
O90.5576 (2)0.88282 (13)0.81900 (15)0.0224 (3)
O1B0.4755 (2)0.64691 (13)0.43885 (16)0.0230 (3)
O2B0.30121 (19)0.48353 (13)0.56335 (16)0.0217 (3)
C3B0.5504 (3)0.54766 (18)0.4641 (2)0.0185 (4)
O1W−0.0119 (2)0.64879 (13)0.60530 (15)0.0219 (3)
H2WB−0.08480.60910.55230.026*
H1WA0.01670.61920.67780.026*
U11U22U33U12U13U23
Mn10.01820 (19)0.01263 (18)0.01991 (19)0.00050 (12)−0.00384 (13)−0.00014 (12)
N10.0170 (9)0.0150 (9)0.0171 (9)0.0001 (7)−0.0008 (7)−0.0001 (6)
C20.0235 (11)0.0219 (11)0.0194 (10)−0.0003 (9)−0.0009 (9)0.0000 (9)
C30.0250 (11)0.0198 (11)0.0229 (11)0.0005 (9)0.0024 (9)0.0033 (9)
C40.0259 (11)0.0165 (11)0.0257 (11)−0.0010 (9)0.0044 (9)0.0013 (9)
N50.0219 (9)0.0166 (9)0.0187 (9)−0.0014 (7)0.0007 (7)−0.0005 (7)
C60.0162 (10)0.0162 (10)0.0170 (10)0.0002 (8)0.0026 (8)−0.0002 (8)
C70.0185 (10)0.0184 (11)0.0167 (10)0.0026 (8)0.0016 (8)−0.0003 (8)
O80.0297 (9)0.0157 (8)0.0241 (8)−0.0014 (6)−0.0074 (7)0.0027 (6)
O90.0222 (8)0.0211 (8)0.0195 (8)−0.0023 (6)−0.0054 (6)0.0001 (6)
O1B0.0223 (8)0.0136 (7)0.0316 (8)0.0020 (6)0.0028 (7)0.0050 (6)
O2B0.0188 (7)0.0163 (7)0.0282 (8)0.0010 (6)0.0009 (6)0.0016 (6)
C3B0.0172 (10)0.0151 (10)0.0191 (10)−0.0009 (8)−0.0055 (8)−0.0017 (8)
O1W0.0235 (8)0.0196 (8)0.0193 (7)−0.0002 (6)−0.0028 (6)0.0028 (6)
Mn1—O9i2.1175 (14)C4—H40.9300
Mn1—O1W2.1677 (15)N5—C61.329 (3)
Mn1—O82.1771 (15)C6—C71.526 (3)
Mn1—O1B2.1958 (16)C7—O91.244 (3)
Mn1—O2B2.2196 (15)C7—O81.248 (3)
Mn1—N12.2790 (18)O9—Mn1ii2.1175 (14)
N1—C61.336 (3)O1B—C3B1.247 (2)
N1—C21.349 (3)O2B—C3Biii1.255 (3)
C2—C31.381 (3)C3B—O2Biii1.255 (3)
C2—H20.9300C3B—C3Biii1.560 (4)
C3—C41.383 (3)O1W—H2WB0.8027
C3—H30.9300O1W—H1WA0.7669
C4—N51.344 (3)
O9i—Mn1—O1W87.50 (6)C2—C3—H3121.5
O9i—Mn1—O8177.38 (6)C4—C3—H3121.5
O1W—Mn1—O890.61 (6)N5—C4—C3122.1 (2)
O9i—Mn1—O1B93.21 (6)N5—C4—H4118.9
O1W—Mn1—O1B164.73 (6)C3—C4—H4118.9
O8—Mn1—O1B89.08 (6)C6—N5—C4116.55 (18)
O9i—Mn1—O2B89.85 (6)N5—C6—N1126.02 (19)
O1W—Mn1—O2B89.76 (6)N5—C6—C7118.09 (18)
O8—Mn1—O2B91.96 (5)N1—C6—C7115.90 (18)
O1B—Mn1—O2B74.99 (5)O9—C7—O8127.13 (19)
O9i—Mn1—N1104.89 (6)O9—C7—C6116.64 (18)
O1W—Mn1—N1101.81 (6)O8—C7—C6116.22 (18)
O8—Mn1—N173.72 (6)C7—O8—Mn1119.06 (13)
O1B—Mn1—N192.76 (6)C7—O9—Mn1ii137.83 (14)
O2B—Mn1—N1161.49 (6)C3B—O1B—Mn1116.05 (14)
C6—N1—C2116.64 (18)C3Biii—O2B—Mn1115.15 (13)
C6—N1—Mn1113.21 (13)O1B—C3B—O2Biii126.4 (2)
C2—N1—Mn1130.12 (14)O1B—C3B—C3Biii117.0 (2)
N1—C2—C3121.7 (2)O2Biii—C3B—C3Biii116.6 (2)
N1—C2—H2119.2Mn1—O1W—H2WB108.0
C3—C2—H2119.2Mn1—O1W—H1WA109.9
C2—C3—C4117.0 (2)H2WB—O1W—H1WA111.7
D—H···AD—HH···AD···AD—H···A
O1W—H2WB···O2Biv0.802.052.847 (2)170
O1W—H1WA···N5v0.772.052.815 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2WB⋯O2Bi0.802.052.847 (2)170
O1W—H1WA⋯N5ii0.772.052.815 (2)171

Symmetry codes: (i) ; (ii) .

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