Literature DB >> 23284349

catena-Poly[[tetra-aqua-μ-aqua-bis-(μ(4)-pyrimidine-2-carboxyl-ato)tetra-lithium] dichloride].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The asymmetric unit of the title compound, [Li(4)(C(5)H(3)N(2)O(2))(2)(H(2)O)(5)]Cl(2), contains two Li(I) cations, one with a distorted trigonal-bipyramidal and the other with a distorted tetra-hedral coordination geometry. Two symmetry-related asymmetric units constitute a building block of the structure, in which both ligand carboxyl-ate O atoms are bidentate and bridge the metal ions, forming a divalent cation. Charge balance is maintained by two chloride anions. The building blocks, bridged by Li(I) cations, form cationic ribbons with chloride anions in the space between them. The ribbons propagate in [010] and are held together by a network of weak O-H⋯O hydrogen bonds which operate in the space between adjacent ribbons.

Entities:  

Year:  2012        PMID: 23284349      PMCID: PMC3515122          DOI: 10.1107/S1600536812041955

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a Li complex with pyrimidine-2-carboxyl­ate and nitrate ligands, see: Starosta & Leciejewicz (2011 ▶). The structure of a LiI complex with pyrimidine-4-carboxyl­ate and water ligands was reported recently by Starosta & Leciejewicz (2012 ▶).

Experimental

Crystal data

[Li4(C5H3N2O2)2(H2O)5]Cl2 M = 434.93 Monoclinic, a = 22.084 (4) Å b = 8.0773 (16) Å c = 10.814 (2) Å β = 94.08 (3)° V = 1924.1 (7) Å3 Z = 4 Mo Kα radiation μ = 0.39 mm−1 T = 293 K 0.37 × 0.24 × 0.18 mm

Data collection

Kuma KM4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.917, T max = 0.935 2964 measured reflections 2819 independent reflections 1781 reflections with I > 2σ(I) R int = 0.029 3 standard reflections every 200 reflections intensity decay: 2.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.147 S = 1.02 2819 reflections 152 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.36 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812041955/qm2084sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041955/qm2084Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li4(C5H3N2O2)2(H2O)5]Cl2F(000) = 888
Mr = 434.93Dx = 1.501 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 22.084 (4) Åθ = 6–15°
b = 8.0773 (16) ŵ = 0.39 mm1
c = 10.814 (2) ÅT = 293 K
β = 94.08 (3)°Block, colourless
V = 1924.1 (7) Å30.37 × 0.24 × 0.18 mm
Z = 4
Kuma KM4 four-circle diffractometer1781 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
Graphite monochromatorθmax = 30.1°, θmin = 1.9°
profile data from ω/2θ scansh = −31→31
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −11→0
Tmin = 0.917, Tmax = 0.935l = 0→15
2964 measured reflections3 standard reflections every 200 reflections
2819 independent reflections intensity decay: 2.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0879P)2 + 1.2478P] where P = (Fo2 + 2Fc2)/3
2819 reflections(Δ/σ)max = 0.004
152 parametersΔρmax = 0.51 e Å3
4 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.08301 (6)0.92604 (19)0.37614 (11)0.0321 (3)
O20.08768 (6)0.96441 (19)0.17202 (11)0.0319 (3)
N30.20103 (7)1.0854 (2)0.20733 (13)0.0277 (3)
N10.19897 (7)1.0170 (2)0.42115 (13)0.0277 (3)
C60.25599 (9)1.0720 (3)0.43984 (17)0.0326 (4)
H60.27521.06570.51910.039*
C20.17410 (7)1.0274 (2)0.30494 (14)0.0232 (3)
C40.25768 (9)1.1411 (3)0.22901 (18)0.0332 (4)
H40.27781.18360.16340.040*
C50.28729 (9)1.1378 (3)0.3457 (2)0.0353 (4)
H50.32661.17810.36010.042*
Li10.13426 (15)0.9162 (5)0.5437 (3)0.0323 (7)
O30.11355 (9)0.6795 (2)0.56747 (16)0.0469 (4)
C70.10916 (8)0.9673 (2)0.28238 (14)0.0239 (3)
O210.00000.6868 (4)0.25000.0527 (6)
Li2−0.00573 (17)0.8841 (8)0.3807 (4)0.0590 (13)
Cl10.10829 (3)0.57231 (8)0.84542 (5)0.04391 (17)
H211−0.0286 (13)0.622 (4)0.230 (3)0.064 (10)*
H320.1130 (18)0.599 (5)0.515 (4)0.086 (12)*
H310.1170 (14)0.627 (4)0.634 (3)0.065 (9)*
O22−0.00669 (8)0.8066 (3)0.54795 (18)0.0618 (6)
H221−0.0386 (10)0.754 (4)0.570 (3)0.075 (10)*
H2220.0166 (14)0.717 (4)0.555 (3)0.120 (17)*
U11U22U33U12U13U23
O10.0302 (6)0.0478 (8)0.0185 (6)−0.0032 (6)0.0031 (5)0.0039 (5)
O20.0313 (6)0.0472 (8)0.0164 (5)−0.0051 (6)−0.0040 (4)0.0036 (5)
N30.0316 (7)0.0335 (8)0.0181 (6)−0.0022 (6)0.0028 (5)0.0009 (6)
N10.0312 (7)0.0352 (8)0.0165 (6)−0.0006 (6)−0.0012 (5)0.0012 (6)
C60.0330 (8)0.0390 (10)0.0245 (8)−0.0006 (8)−0.0062 (6)−0.0016 (7)
C20.0291 (8)0.0258 (8)0.0148 (6)0.0024 (6)0.0012 (5)0.0000 (6)
C40.0354 (9)0.0361 (10)0.0289 (9)−0.0051 (8)0.0075 (7)0.0008 (7)
C50.0289 (9)0.0392 (10)0.0373 (10)−0.0036 (8)−0.0006 (7)−0.0014 (8)
Li10.0376 (16)0.0420 (18)0.0173 (13)0.0004 (14)0.0020 (11)−0.0006 (12)
O30.0754 (12)0.0358 (8)0.0277 (7)0.0017 (8)−0.0090 (7)0.0005 (7)
C70.0258 (7)0.0285 (8)0.0171 (7)0.0017 (6)0.0006 (5)0.0009 (6)
O210.0337 (11)0.0675 (17)0.0551 (15)0.000−0.0086 (10)0.000
Li20.0301 (17)0.116 (4)0.0305 (18)0.009 (2)0.0030 (14)0.018 (2)
Cl10.0420 (3)0.0553 (3)0.0345 (3)−0.0001 (2)0.00346 (19)0.0087 (2)
O220.0349 (8)0.0967 (16)0.0550 (11)0.0101 (10)0.0123 (7)0.0338 (11)
O1—C71.247 (2)Li1—N3iii2.221 (4)
Li1—O12.069 (3)Li1—Li2iv3.414 (6)
O2—C71.2528 (19)O3—H320.86 (4)
O2—Li2i1.968 (4)O3—H310.83 (4)
O2—Li1ii2.029 (4)Li2—O212.140 (6)
N3—C21.333 (2)O21—Li2i2.140 (6)
N3—C41.335 (2)O21—H2110.84 (3)
N3—Li1ii2.221 (4)Li2—O221.915 (4)
N1—C61.337 (2)Li2—O2i1.968 (4)
N1—C21.338 (2)Li2—O11.993 (4)
Li1—N12.175 (4)Li2—O22iv2.623 (7)
C6—C51.377 (3)Li2—Li2i2.856 (8)
C6—H60.9300Li2—Li2iv3.183 (11)
C2—C71.517 (2)Li2—Li1iv3.414 (6)
C4—C51.379 (3)Li2—H2222.343 (18)
C4—H40.9300O22—Li2iv2.623 (7)
C5—H50.9300O22—H2210.868 (18)
Li1—O31.987 (4)O22—H2220.891 (18)
Li1—O2iii2.029 (4)
C7—O1—Li2125.36 (16)Li2—O21—Li2i83.7 (3)
C7—O1—Li1117.79 (15)Li2—O21—H211124 (2)
Li2—O1—Li1116.70 (16)Li2i—O21—H211112 (2)
C7—O2—Li2i124.07 (17)O22—Li2—O2i108.02 (19)
C7—O2—Li1ii117.82 (15)O22—Li2—O198.98 (19)
Li2i—O2—Li1ii117.32 (18)O2i—Li2—O1145.3 (3)
C2—N3—C4116.42 (15)O22—Li2—O21112.7 (3)
C2—N3—Li1ii108.69 (14)O2i—Li2—O2198.6 (2)
C4—N3—Li1ii134.65 (15)O1—Li2—O2190.32 (18)
C6—N1—C2116.14 (15)O22—Li2—O22iv92.4 (2)
C6—N1—Li1133.22 (14)O2i—Li2—O22iv81.1 (2)
C2—N1—Li1110.62 (14)O1—Li2—O22iv76.29 (19)
N1—C6—C5122.22 (17)O21—Li2—O22iv153.3 (2)
N1—C6—H6118.9O22—Li2—Li2i160.4 (2)
C5—C6—H6118.9O2i—Li2—Li2i81.81 (19)
N3—C2—N1126.11 (16)O1—Li2—Li2i79.56 (18)
N3—C2—C7117.06 (14)O21—Li2—Li2i48.13 (14)
N1—C2—C7116.82 (15)O22iv—Li2—Li2i106.04 (10)
N3—C4—C5122.10 (17)O22—Li2—Li2iv55.42 (15)
N3—C4—H4119.0O2i—Li2—Li2iv93.4 (2)
C5—C4—H4119.0O1—Li2—Li2iv84.2 (2)
C6—C5—C4116.98 (18)O21—Li2—Li2iv165.6 (3)
C6—C5—H5121.5O22iv—Li2—Li2iv36.95 (15)
C4—C5—H5121.5Li2i—Li2—Li2iv142.6 (2)
O3—Li1—O2iii103.68 (16)O22—Li2—Li1iv82.13 (16)
O3—Li1—O191.92 (15)O2i—Li2—Li1iv31.87 (10)
O2iii—Li1—O1107.96 (16)O1—Li2—Li1iv139.6 (3)
O3—Li1—N1127.32 (18)O21—Li2—Li1iv126.81 (17)
O2iii—Li1—N1128.74 (19)O22iv—Li2—Li1iv63.32 (13)
O1—Li1—N178.11 (12)Li2i—Li2—Li1iv111.75 (17)
O3—Li1—N3iii92.14 (15)Li2iv—Li2—Li1iv63.10 (15)
O2iii—Li1—N3iii78.36 (12)O22—Li2—H22221.2 (6)
O1—Li1—N3iii171.42 (18)O2i—Li2—H222124.0 (7)
N1—Li1—N3iii93.42 (14)O1—Li2—H22288.1 (8)
O3—Li1—Li2iv102.75 (17)O21—Li2—H22294.7 (9)
O2iii—Li1—Li2iv30.81 (10)O22iv—Li2—H222107.6 (10)
O1—Li1—Li2iv77.24 (13)Li2i—Li2—H222140.1 (7)
N1—Li1—Li2iv124.23 (17)Li2iv—Li2—H22271.8 (9)
N3iii—Li1—Li2iv109.16 (14)Li1iv—Li2—H222102.2 (6)
Li1—O3—H32129 (3)Li2—O22—Li2iv87.6 (2)
Li1—O3—H31126 (2)Li2—O22—H221119 (2)
H32—O3—H31101 (3)Li2iv—O22—H221117 (2)
O1—C7—O2127.12 (16)Li2—O22—H222107.6 (17)
O1—C7—C2116.22 (14)Li2iv—O22—H222135 (3)
O2—C7—C2116.65 (15)H221—O22—H22293 (2)
D—H···AD—HH···AD···AD—H···A
O22—H222···O30.89 (2)2.16 (3)2.841 (3)133 (3)
O22—H221···Cl1v0.87 (2)2.36 (2)3.212 (2)167 (3)
O3—H31···Cl10.83 (4)2.35 (4)3.1381 (19)158 (3)
O3—H32···Cl1vi0.86 (4)2.29 (4)3.1429 (19)168 (4)
O21—H211···Cl1vii0.84 (3)2.45 (3)3.288 (2)175 (3)
Table 1

Selected bond lengths (Å)

Li1—O12.069 (3)
Li1—N12.175 (4)
Li1—O31.987 (4)
Li1—O2i 2.029 (4)
Li1—N3i 2.221 (4)
Li2—O212.140 (6)
Li2—O221.915 (4)
Li2—O2ii 1.968 (4)
Li2—O11.993 (4)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O22—H222⋯O30.89 (2)2.16 (3)2.841 (3)133 (3)
O22—H221⋯Cl1iii 0.87 (2)2.36 (2)3.212 (2)167 (3)
O3—H31⋯Cl10.83 (4)2.35 (4)3.1381 (19)158 (3)
O3—H32⋯Cl1iv 0.86 (4)2.29 (4)3.1429 (19)168 (4)
O21—H211⋯Cl1v 0.84 (3)2.45 (3)3.288 (2)175 (3)

Symmetry codes: (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[(μ(2)-nitrato-κO:O')(μ(2)-pyrimidin-ium-2-carboxyl-ato-κO:O')lithium(I)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28

3.  Bis(μ(3)-pyrimidine-4-carboxyl-ato)bis-(μ(2)-pyrimidine-4-carboxyl-ato)tetra-kis-(aqua-lithium).

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-14
  3 in total
  1 in total

1.  Crystal structure of catena-poly[[[aqua-lithium(I)]-μ-pyrimidine-2-carboxyl-ato-κ(4) N (1),O (2):N (3),O (2')] hemihydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.