Literature DB >> 21588484

catena-Poly[[(pyrimidine-2-carb-oxy-lic acid)iron(II)]-μ-oxalato].

Jiong-Peng Zhao1, Fu-Chen Liu.   

Abstract

In the title complex, [Fe(C(2)O(4))(C(5)H(4)N(2)O(4))](n), the Fe(II) ion is coordinated by two oxalate anions and a pyrimidine-2-carb-oxy-lic acid ligand in a slightly distorted octa-hedral geometry. Each oxalate anion chelates to two Fe(II) ions, forming chains along the a axis. The chains are further connected by O-H⋯O and C-H⋯O hydrogen bonds, stabilizing the structure. An intra-molecular O-H⋯N inter-action results in a five-membered ring.

Entities:  

Year:  2010        PMID: 21588484      PMCID: PMC3008040          DOI: 10.1107/S1600536810030023

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Zhang et al. (2008 ▶).

Experimental

Crystal data

[Fe(C2O4)(C5H4N2O4)] M = 267.97 Orthorhombic, a = 9.0524 (18) Å b = 9.1578 (18) Å c = 11.329 (2) Å V = 939.2 (3) Å3 Z = 4 Mo Kα radiation μ = 1.62 mm−1 T = 293 K 0.20 × 0.18 × 0.16 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.780, T max = 1 7603 measured reflections 1658 independent reflections 1503 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.083 S = 1.11 1658 reflections 145 parameters 1 restraint H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.30 e Å−3 Absolute structure: Flack (1983 ▶), 783 Friedel pairs Flack parameter: 0.05 (3) Data collection: SCXmini Benchtop Crystallography System Software (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO (Rigaku, 1998 ▶); data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030023/pv2297sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030023/pv2297Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C2O4)(C5H4N2O4)]F(000) = 536
Mr = 267.97Dx = 1.895 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 8691 reflections
a = 9.0524 (18) Åθ = 3.2–27.5°
b = 9.1578 (18) ŵ = 1.62 mm1
c = 11.329 (2) ÅT = 293 K
V = 939.2 (3) Å3Block, red
Z = 40.2 × 0.18 × 0.16 mm
Rigaku SCXmini diffractometer1658 independent reflections
Radiation source: fine-focus sealed tube1503 reflections with I > 2σ(I)
graphiteRint = 0.074
ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.780, Tmax = 1k = −10→10
7603 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0339P)2 + 0.7762P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
1658 reflectionsΔρmax = 0.46 e Å3
145 parametersΔρmin = −0.30 e Å3
1 restraintAbsolute structure: Flack (1983), 783 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.05 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.13566 (6)−0.08170 (6)0.71653 (7)0.02969 (18)
C40.1749 (5)0.2409 (5)0.7015 (4)0.0263 (10)
O50.2520 (4)0.0586 (3)0.8376 (3)0.0397 (9)
O1−0.0702 (3)−0.0924 (3)0.8009 (3)0.0293 (7)
N10.0989 (4)0.1349 (4)0.6452 (4)0.0307 (9)
O60.3406 (5)0.2878 (5)0.8630 (4)0.0624 (12)
H60.34560.37460.83690.075*
C30.2601 (5)0.1886 (5)0.8074 (4)0.0325 (11)
O3−0.2731 (3)−0.2329 (4)0.8046 (3)0.0353 (8)
O20.0098 (4)−0.2138 (4)0.5963 (3)0.0343 (8)
C70.0149 (5)0.1768 (6)0.5565 (4)0.0349 (12)
H7A−0.04050.10720.51630.042*
O4−0.1781 (4)−0.3696 (4)0.6089 (3)0.0368 (9)
C50.0923 (6)0.4168 (6)0.5831 (5)0.0438 (13)
H5A0.09160.51410.55970.053*
C60.0066 (6)0.3211 (6)0.5216 (5)0.0408 (13)
H6A−0.05390.35110.45980.049*
N20.1764 (5)0.3806 (4)0.6738 (4)0.0350 (11)
C2−0.1034 (5)−0.2649 (5)0.6452 (4)0.0263 (11)
C1−0.1539 (5)−0.1906 (5)0.7602 (4)0.0256 (10)
U11U22U33U12U13U23
Fe10.0248 (3)0.0246 (3)0.0396 (4)−0.0008 (3)0.0015 (4)0.0021 (4)
C40.028 (2)0.028 (2)0.023 (3)0.0011 (17)0.002 (2)−0.002 (2)
O50.053 (2)0.0245 (19)0.042 (2)−0.0094 (17)−0.0203 (18)0.0093 (15)
O10.0252 (17)0.0282 (17)0.0344 (19)0.0003 (15)0.0030 (15)−0.0040 (15)
N10.030 (2)0.034 (2)0.029 (2)0.0011 (18)0.0004 (18)0.0003 (18)
O60.076 (3)0.049 (3)0.062 (3)−0.010 (2)−0.010 (2)0.007 (2)
C30.033 (3)0.035 (3)0.029 (3)−0.007 (2)−0.006 (2)−0.001 (2)
O30.0304 (19)0.0338 (19)0.042 (2)−0.0084 (16)0.0102 (17)−0.0078 (17)
O20.0298 (18)0.0426 (19)0.0304 (18)−0.0060 (16)0.0071 (16)−0.0054 (17)
C70.033 (3)0.042 (3)0.030 (3)−0.002 (2)−0.007 (2)−0.003 (2)
O40.0292 (18)0.041 (2)0.040 (2)−0.0042 (16)0.0069 (17)−0.0142 (17)
C50.053 (3)0.033 (3)0.045 (3)0.010 (3)−0.001 (3)0.008 (3)
C60.043 (3)0.043 (3)0.037 (3)0.010 (3)−0.008 (3)0.002 (2)
N20.041 (3)0.024 (2)0.039 (3)−0.0041 (17)−0.0069 (19)0.0036 (16)
C20.023 (2)0.030 (3)0.026 (3)0.007 (2)−0.001 (2)−0.001 (2)
C10.021 (2)0.024 (2)0.032 (2)0.003 (2)0.0027 (19)0.0036 (18)
Fe1—O12.097 (3)O6—H60.8500
Fe1—O4i2.128 (3)O3—C11.252 (5)
Fe1—O3i2.136 (3)O3—Fe1ii2.136 (3)
Fe1—O22.148 (3)O2—C21.255 (6)
Fe1—O52.154 (3)C7—C61.382 (7)
Fe1—N12.168 (4)C7—H7A0.9300
C4—N21.318 (6)O4—C21.243 (6)
C4—N11.350 (6)O4—Fe1ii2.128 (3)
C4—C31.504 (7)C5—N21.321 (7)
O5—C31.240 (6)C5—C61.362 (8)
O1—C11.263 (6)C5—H5A0.9300
N1—C71.317 (6)C6—H6A0.9300
O6—C31.325 (6)C2—C11.540 (6)
O1—Fe1—O4i162.87 (14)C3—O6—H6120.4
O1—Fe1—O3i95.38 (13)O5—C3—O6124.0 (4)
O4i—Fe1—O3i78.16 (13)O5—C3—C4119.7 (4)
O1—Fe1—O277.96 (12)O6—C3—C4116.3 (4)
O4i—Fe1—O286.49 (14)C1—O3—Fe1ii113.1 (3)
O3i—Fe1—O293.08 (14)C2—O2—Fe1111.3 (3)
O1—Fe1—O599.90 (14)N1—C7—C6121.9 (5)
O4i—Fe1—O595.90 (15)N1—C7—H7A119.1
O3i—Fe1—O589.29 (13)C6—C7—H7A119.1
O2—Fe1—O5176.94 (13)C2—O4—Fe1ii113.7 (3)
O1—Fe1—N194.37 (14)N2—C5—C6124.4 (5)
O4i—Fe1—N195.72 (14)N2—C5—H5A117.8
O3i—Fe1—N1163.96 (15)C6—C5—H5A117.8
O2—Fe1—N1101.40 (14)C5—C6—C7115.9 (5)
O5—Fe1—N176.50 (14)C5—C6—H6A122.0
N2—C4—N1126.2 (5)C7—C6—H6A122.0
N2—C4—C3119.6 (4)C4—N2—C5115.0 (4)
N1—C4—C3114.2 (4)O4—C2—O2125.8 (5)
C3—O5—Fe1115.2 (3)O4—C2—C1117.4 (4)
C1—O1—Fe1113.6 (3)O2—C2—C1116.8 (4)
C7—N1—C4116.5 (4)O3—C1—O1126.2 (4)
C7—N1—Fe1129.7 (4)O3—C1—C2117.3 (4)
C4—N1—Fe1113.8 (3)O1—C1—C2116.5 (4)
O1—Fe1—O5—C3−99.7 (4)N1—C4—C3—O5−2.3 (6)
O4i—Fe1—O5—C386.9 (4)N2—C4—C3—O6−4.2 (7)
O3i—Fe1—O5—C3165.0 (4)N1—C4—C3—O6177.7 (4)
N1—Fe1—O5—C3−7.5 (4)O1—Fe1—O2—C2−17.7 (3)
O4i—Fe1—O1—C1−10.5 (6)O4i—Fe1—O2—C2155.1 (3)
O3i—Fe1—O1—C1−77.3 (3)O3i—Fe1—O2—C277.2 (3)
O2—Fe1—O1—C114.7 (3)N1—Fe1—O2—C2−109.8 (3)
O5—Fe1—O1—C1−167.5 (3)C4—N1—C7—C61.0 (7)
N1—Fe1—O1—C1115.5 (3)Fe1—N1—C7—C6−178.9 (4)
N2—C4—N1—C7−2.3 (7)N2—C5—C6—C7−2.2 (9)
C3—C4—N1—C7175.7 (4)N1—C7—C6—C51.0 (8)
N2—C4—N1—Fe1177.7 (4)N1—C4—N2—C51.2 (7)
C3—C4—N1—Fe1−4.3 (5)C3—C4—N2—C5−176.7 (4)
O1—Fe1—N1—C7−74.8 (4)C6—C5—N2—C41.2 (8)
O4i—Fe1—N1—C791.3 (4)Fe1ii—O4—C2—O2−178.8 (4)
O3i—Fe1—N1—C7157.9 (5)Fe1ii—O4—C2—C11.0 (5)
O2—Fe1—N1—C73.8 (4)Fe1—O2—C2—O4−162.4 (4)
O5—Fe1—N1—C7−174.0 (4)Fe1—O2—C2—C117.8 (5)
O1—Fe1—N1—C4105.3 (3)Fe1ii—O3—C1—O1−173.3 (4)
O4i—Fe1—N1—C4−88.6 (3)Fe1ii—O3—C1—C26.6 (5)
O3i—Fe1—N1—C4−22.1 (7)Fe1—O1—C1—O3169.6 (4)
O2—Fe1—N1—C4−176.2 (3)Fe1—O1—C1—C2−10.3 (5)
O5—Fe1—N1—C46.1 (3)O4—C2—C1—O3−5.4 (6)
Fe1—O5—C3—O6−172.2 (4)O2—C2—C1—O3174.4 (4)
Fe1—O5—C3—C47.8 (6)O4—C2—C1—O1174.4 (4)
N2—C4—C3—O5175.8 (5)O2—C2—C1—O1−5.7 (6)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O3iii0.932.483.279 (6)145
O6—H6···O1iv0.852.172.988 (5)161
O6—H6···N20.852.402.743 (6)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6A⋯O3i0.932.483.279 (6)145
O6—H6⋯O1ii0.852.172.988 (5)161
O6—H6⋯N20.852.402.743 (6)105

Symmetry codes: (i) ; (ii) .

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