| Literature DB >> 21588484 |
Jiong-Peng Zhao1, Fu-Chen Liu.
Abstract
In the title complex, [Fe(C(2)O(4))(C(5)H(4)N(2)O(4))](n), the Fe(II) ion is coordinated by two oxalate anions and a pyrimidine-2-carb-oxy-lic acid ligand in a slightly distorted octa-hedral geometry. Each oxalate anion chelates to two Fe(II) ions, forming chains along the a axis. The chains are further connected by O-H⋯O and C-H⋯O hydrogen bonds, stabilizing the structure. An intra-molecular O-H⋯N inter-action results in a five-membered ring.Entities:
Year: 2010 PMID: 21588484 PMCID: PMC3008040 DOI: 10.1107/S1600536810030023
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Fe(C2O4)(C5H4N2O4)] | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 8691 reflections |
| θ = 3.2–27.5° | |
| µ = 1.62 mm−1 | |
| Block, red | |
| 0.2 × 0.18 × 0.16 mm |
| Rigaku SCXmini diffractometer | 1658 independent reflections |
| Radiation source: fine-focus sealed tube | 1503 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 7603 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1658 reflections | Δρmax = 0.46 e Å−3 |
| 145 parameters | Δρmin = −0.30 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 783 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.05 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Fe1 | 0.13566 (6) | −0.08170 (6) | 0.71653 (7) | 0.02969 (18) | |
| C4 | 0.1749 (5) | 0.2409 (5) | 0.7015 (4) | 0.0263 (10) | |
| O5 | 0.2520 (4) | 0.0586 (3) | 0.8376 (3) | 0.0397 (9) | |
| O1 | −0.0702 (3) | −0.0924 (3) | 0.8009 (3) | 0.0293 (7) | |
| N1 | 0.0989 (4) | 0.1349 (4) | 0.6452 (4) | 0.0307 (9) | |
| O6 | 0.3406 (5) | 0.2878 (5) | 0.8630 (4) | 0.0624 (12) | |
| H6 | 0.3456 | 0.3746 | 0.8369 | 0.075* | |
| C3 | 0.2601 (5) | 0.1886 (5) | 0.8074 (4) | 0.0325 (11) | |
| O3 | −0.2731 (3) | −0.2329 (4) | 0.8046 (3) | 0.0353 (8) | |
| O2 | 0.0098 (4) | −0.2138 (4) | 0.5963 (3) | 0.0343 (8) | |
| C7 | 0.0149 (5) | 0.1768 (6) | 0.5565 (4) | 0.0349 (12) | |
| H7A | −0.0405 | 0.1072 | 0.5163 | 0.042* | |
| O4 | −0.1781 (4) | −0.3696 (4) | 0.6089 (3) | 0.0368 (9) | |
| C5 | 0.0923 (6) | 0.4168 (6) | 0.5831 (5) | 0.0438 (13) | |
| H5A | 0.0916 | 0.5141 | 0.5597 | 0.053* | |
| C6 | 0.0066 (6) | 0.3211 (6) | 0.5216 (5) | 0.0408 (13) | |
| H6A | −0.0539 | 0.3511 | 0.4598 | 0.049* | |
| N2 | 0.1764 (5) | 0.3806 (4) | 0.6738 (4) | 0.0350 (11) | |
| C2 | −0.1034 (5) | −0.2649 (5) | 0.6452 (4) | 0.0263 (11) | |
| C1 | −0.1539 (5) | −0.1906 (5) | 0.7602 (4) | 0.0256 (10) |
| Fe1 | 0.0248 (3) | 0.0246 (3) | 0.0396 (4) | −0.0008 (3) | 0.0015 (4) | 0.0021 (4) |
| C4 | 0.028 (2) | 0.028 (2) | 0.023 (3) | 0.0011 (17) | 0.002 (2) | −0.002 (2) |
| O5 | 0.053 (2) | 0.0245 (19) | 0.042 (2) | −0.0094 (17) | −0.0203 (18) | 0.0093 (15) |
| O1 | 0.0252 (17) | 0.0282 (17) | 0.0344 (19) | 0.0003 (15) | 0.0030 (15) | −0.0040 (15) |
| N1 | 0.030 (2) | 0.034 (2) | 0.029 (2) | 0.0011 (18) | 0.0004 (18) | 0.0003 (18) |
| O6 | 0.076 (3) | 0.049 (3) | 0.062 (3) | −0.010 (2) | −0.010 (2) | 0.007 (2) |
| C3 | 0.033 (3) | 0.035 (3) | 0.029 (3) | −0.007 (2) | −0.006 (2) | −0.001 (2) |
| O3 | 0.0304 (19) | 0.0338 (19) | 0.042 (2) | −0.0084 (16) | 0.0102 (17) | −0.0078 (17) |
| O2 | 0.0298 (18) | 0.0426 (19) | 0.0304 (18) | −0.0060 (16) | 0.0071 (16) | −0.0054 (17) |
| C7 | 0.033 (3) | 0.042 (3) | 0.030 (3) | −0.002 (2) | −0.007 (2) | −0.003 (2) |
| O4 | 0.0292 (18) | 0.041 (2) | 0.040 (2) | −0.0042 (16) | 0.0069 (17) | −0.0142 (17) |
| C5 | 0.053 (3) | 0.033 (3) | 0.045 (3) | 0.010 (3) | −0.001 (3) | 0.008 (3) |
| C6 | 0.043 (3) | 0.043 (3) | 0.037 (3) | 0.010 (3) | −0.008 (3) | 0.002 (2) |
| N2 | 0.041 (3) | 0.024 (2) | 0.039 (3) | −0.0041 (17) | −0.0069 (19) | 0.0036 (16) |
| C2 | 0.023 (2) | 0.030 (3) | 0.026 (3) | 0.007 (2) | −0.001 (2) | −0.001 (2) |
| C1 | 0.021 (2) | 0.024 (2) | 0.032 (2) | 0.003 (2) | 0.0027 (19) | 0.0036 (18) |
| Fe1—O1 | 2.097 (3) | O6—H6 | 0.8500 |
| Fe1—O4i | 2.128 (3) | O3—C1 | 1.252 (5) |
| Fe1—O3i | 2.136 (3) | O3—Fe1ii | 2.136 (3) |
| Fe1—O2 | 2.148 (3) | O2—C2 | 1.255 (6) |
| Fe1—O5 | 2.154 (3) | C7—C6 | 1.382 (7) |
| Fe1—N1 | 2.168 (4) | C7—H7A | 0.9300 |
| C4—N2 | 1.318 (6) | O4—C2 | 1.243 (6) |
| C4—N1 | 1.350 (6) | O4—Fe1ii | 2.128 (3) |
| C4—C3 | 1.504 (7) | C5—N2 | 1.321 (7) |
| O5—C3 | 1.240 (6) | C5—C6 | 1.362 (8) |
| O1—C1 | 1.263 (6) | C5—H5A | 0.9300 |
| N1—C7 | 1.317 (6) | C6—H6A | 0.9300 |
| O6—C3 | 1.325 (6) | C2—C1 | 1.540 (6) |
| O1—Fe1—O4i | 162.87 (14) | C3—O6—H6 | 120.4 |
| O1—Fe1—O3i | 95.38 (13) | O5—C3—O6 | 124.0 (4) |
| O4i—Fe1—O3i | 78.16 (13) | O5—C3—C4 | 119.7 (4) |
| O1—Fe1—O2 | 77.96 (12) | O6—C3—C4 | 116.3 (4) |
| O4i—Fe1—O2 | 86.49 (14) | C1—O3—Fe1ii | 113.1 (3) |
| O3i—Fe1—O2 | 93.08 (14) | C2—O2—Fe1 | 111.3 (3) |
| O1—Fe1—O5 | 99.90 (14) | N1—C7—C6 | 121.9 (5) |
| O4i—Fe1—O5 | 95.90 (15) | N1—C7—H7A | 119.1 |
| O3i—Fe1—O5 | 89.29 (13) | C6—C7—H7A | 119.1 |
| O2—Fe1—O5 | 176.94 (13) | C2—O4—Fe1ii | 113.7 (3) |
| O1—Fe1—N1 | 94.37 (14) | N2—C5—C6 | 124.4 (5) |
| O4i—Fe1—N1 | 95.72 (14) | N2—C5—H5A | 117.8 |
| O3i—Fe1—N1 | 163.96 (15) | C6—C5—H5A | 117.8 |
| O2—Fe1—N1 | 101.40 (14) | C5—C6—C7 | 115.9 (5) |
| O5—Fe1—N1 | 76.50 (14) | C5—C6—H6A | 122.0 |
| N2—C4—N1 | 126.2 (5) | C7—C6—H6A | 122.0 |
| N2—C4—C3 | 119.6 (4) | C4—N2—C5 | 115.0 (4) |
| N1—C4—C3 | 114.2 (4) | O4—C2—O2 | 125.8 (5) |
| C3—O5—Fe1 | 115.2 (3) | O4—C2—C1 | 117.4 (4) |
| C1—O1—Fe1 | 113.6 (3) | O2—C2—C1 | 116.8 (4) |
| C7—N1—C4 | 116.5 (4) | O3—C1—O1 | 126.2 (4) |
| C7—N1—Fe1 | 129.7 (4) | O3—C1—C2 | 117.3 (4) |
| C4—N1—Fe1 | 113.8 (3) | O1—C1—C2 | 116.5 (4) |
| O1—Fe1—O5—C3 | −99.7 (4) | N1—C4—C3—O5 | −2.3 (6) |
| O4i—Fe1—O5—C3 | 86.9 (4) | N2—C4—C3—O6 | −4.2 (7) |
| O3i—Fe1—O5—C3 | 165.0 (4) | N1—C4—C3—O6 | 177.7 (4) |
| N1—Fe1—O5—C3 | −7.5 (4) | O1—Fe1—O2—C2 | −17.7 (3) |
| O4i—Fe1—O1—C1 | −10.5 (6) | O4i—Fe1—O2—C2 | 155.1 (3) |
| O3i—Fe1—O1—C1 | −77.3 (3) | O3i—Fe1—O2—C2 | 77.2 (3) |
| O2—Fe1—O1—C1 | 14.7 (3) | N1—Fe1—O2—C2 | −109.8 (3) |
| O5—Fe1—O1—C1 | −167.5 (3) | C4—N1—C7—C6 | 1.0 (7) |
| N1—Fe1—O1—C1 | 115.5 (3) | Fe1—N1—C7—C6 | −178.9 (4) |
| N2—C4—N1—C7 | −2.3 (7) | N2—C5—C6—C7 | −2.2 (9) |
| C3—C4—N1—C7 | 175.7 (4) | N1—C7—C6—C5 | 1.0 (8) |
| N2—C4—N1—Fe1 | 177.7 (4) | N1—C4—N2—C5 | 1.2 (7) |
| C3—C4—N1—Fe1 | −4.3 (5) | C3—C4—N2—C5 | −176.7 (4) |
| O1—Fe1—N1—C7 | −74.8 (4) | C6—C5—N2—C4 | 1.2 (8) |
| O4i—Fe1—N1—C7 | 91.3 (4) | Fe1ii—O4—C2—O2 | −178.8 (4) |
| O3i—Fe1—N1—C7 | 157.9 (5) | Fe1ii—O4—C2—C1 | 1.0 (5) |
| O2—Fe1—N1—C7 | 3.8 (4) | Fe1—O2—C2—O4 | −162.4 (4) |
| O5—Fe1—N1—C7 | −174.0 (4) | Fe1—O2—C2—C1 | 17.8 (5) |
| O1—Fe1—N1—C4 | 105.3 (3) | Fe1ii—O3—C1—O1 | −173.3 (4) |
| O4i—Fe1—N1—C4 | −88.6 (3) | Fe1ii—O3—C1—C2 | 6.6 (5) |
| O3i—Fe1—N1—C4 | −22.1 (7) | Fe1—O1—C1—O3 | 169.6 (4) |
| O2—Fe1—N1—C4 | −176.2 (3) | Fe1—O1—C1—C2 | −10.3 (5) |
| O5—Fe1—N1—C4 | 6.1 (3) | O4—C2—C1—O3 | −5.4 (6) |
| Fe1—O5—C3—O6 | −172.2 (4) | O2—C2—C1—O3 | 174.4 (4) |
| Fe1—O5—C3—C4 | 7.8 (6) | O4—C2—C1—O1 | 174.4 (4) |
| N2—C4—C3—O5 | 175.8 (5) | O2—C2—C1—O1 | −5.7 (6) |
| H··· | ||||
| C6—H6A···O3iii | 0.93 | 2.48 | 3.279 (6) | 145 |
| O6—H6···O1iv | 0.85 | 2.17 | 2.988 (5) | 161 |
| O6—H6···N2 | 0.85 | 2.40 | 2.743 (6) | 105 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C6—H6 | 0.93 | 2.48 | 3.279 (6) | 145 |
| O6—H6⋯O1ii | 0.85 | 2.17 | 2.988 (5) | 161 |
| O6—H6⋯N2 | 0.85 | 2.40 | 2.743 (6) | 105 |
Symmetry codes: (i) ; (ii) .