Literature DB >> 23125771

2,4-Bis(4-eth-oxy-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Dong Ho Park1, V Ramkumar, P Parthiban.   

Abstract

In the title compound, C(25)H(30)NO(3), a crystallographic mirror plane bis-ects the mol-ecule. Although it is a positional isomer of 2,4-bis(4-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]non-an-9-one [C(25)H(31)NO(3), M(r) = 393.51; Park et al. (2012c ▶). Acta Cryst. E68, o779-780], its mol-ecular weight is 392.50 due to the 50:50 ratio of the methyl group at bridgehead C atoms. However, the title compound exists in the same twin-chair conformation as its 7-methyl isomer. Also, the 4-eth-oxy-phenyl groups are equatorially oriented on the bicycle as in its isomer. In the title compound, the cyclo-hexanone ring deviates from an ideal chair (total puckering amplitude Q(T) = 0.5390 Å) and the piperidone ring is closer to an ideal chair (Q(T) = 0.6064 Å). These Q(T) values are very similar to those of its isomer. Even though a center of symmetry passes through the 7-methyl analog, the benzene rings are oriented 26.11 (3)° with respect to each other, whereas the orientation is 53.10 (3)° for the title compound. The title compound exhibits inter-molecular N-H⋯O inter-actions [H⋯A = 2.25 (2) Å, versus 2.26 (2) Å for the analog].

Entities:  

Year:  2012        PMID: 23125771      PMCID: PMC3470358          DOI: 10.1107/S1600536812039840

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, stereochemistry and biological activities of 3-aza­bicyclo­[3.3.1]nonan-9-ones, see: Park et al. (2011a ▶, 2012a ▶). For analogous structures, see: Park et al. (2012b ▶, 2012c ▶); Parthiban et al. (2011b ▶, 2011c ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H30NO3 M = 392.50 Orthorhombic, a = 11.9280 (4) Å b = 26.1702 (14) Å c = 6.9656 (3) Å V = 2174.37 (17) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.35 × 0.28 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.973, T max = 0.988 7809 measured reflections 2396 independent reflections 1689 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.133 S = 1.06 2396 reflections 147 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039840/bq2375sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039840/bq2375Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039840/bq2375Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H30NO3F(000) = 844
Mr = 392.50Dx = 1.199 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 3421 reflections
a = 11.9280 (4) Åθ = 3.0–27.7°
b = 26.1702 (14) ŵ = 0.08 mm1
c = 6.9656 (3) ÅT = 298 K
V = 2174.37 (17) Å3Block, colourless
Z = 40.35 × 0.28 × 0.15 mm
Bruker APEXII CCD area-detector diffractometer2396 independent reflections
Radiation source: fine-focus sealed tube1689 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
phi and ω scansθmax = 28.4°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −15→14
Tmin = 0.973, Tmax = 0.988k = −33→25
7809 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0613P)2 + 0.3421P] where P = (Fo2 + 2Fc2)/3
2396 reflections(Δ/σ)max < 0.001
147 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.55634 (11)0.70312 (5)0.13583 (19)0.0350 (4)
H10.51800.70370.26030.042*
C20.46403 (11)0.70192 (6)−0.0240 (2)0.0419 (4)
C30.39793 (16)0.75000.0051 (3)0.0444 (6)
C40.57166 (18)0.7500−0.2899 (3)0.0487 (6)
H4A0.58260.7500−0.42790.058*
H4B0.64500.7500−0.22960.058*
C50.50932 (12)0.70215 (7)−0.2323 (2)0.0511 (5)
H5A0.55910.6731−0.24820.061*
H5B0.44670.6975−0.31950.061*
C60.63304 (11)0.65729 (5)0.1344 (2)0.0360 (4)
C70.72669 (13)0.65458 (6)0.0151 (2)0.0445 (4)
H70.74150.6814−0.06870.053*
C80.79747 (13)0.61325 (6)0.0183 (2)0.0464 (4)
H80.85890.6123−0.06380.056*
C90.77820 (12)0.57292 (6)0.1430 (2)0.0415 (4)
C100.68483 (13)0.57420 (6)0.2607 (2)0.0468 (4)
H100.66970.54710.34330.056*
C110.61410 (12)0.61616 (6)0.2545 (2)0.0440 (4)
H110.55150.61670.33410.053*
C120.84722 (15)0.49538 (6)0.2799 (2)0.0564 (5)
H12A0.77870.47600.26260.068*
H12B0.84570.51070.40660.068*
C130.94628 (17)0.46091 (7)0.2622 (3)0.0651 (5)
H13A0.94920.44710.13470.098*
H13B0.93980.43350.35330.098*
H13C1.01350.47990.28730.098*
C140.3844 (2)0.66095 (12)−0.0007 (4)0.0431 (7)0.50
H14A0.35800.66040.12950.065*0.50
H14B0.41990.6290−0.03010.065*0.50
H14C0.32220.6662−0.08600.065*0.50
N10.62172 (13)0.75000.1205 (2)0.0327 (4)
O10.29964 (12)0.75000.0541 (3)0.0738 (6)
O20.85487 (9)0.53399 (4)0.13792 (16)0.0533 (3)
H1N0.6708 (19)0.75000.211 (3)0.039 (6)*
U11U22U33U12U13U23
C10.0331 (6)0.0380 (9)0.0340 (8)−0.0042 (7)0.0035 (5)0.0000 (6)
C20.0309 (7)0.0523 (11)0.0425 (8)−0.0109 (7)−0.0005 (6)−0.0055 (7)
C30.0272 (9)0.0715 (17)0.0343 (11)0.000−0.0034 (7)0.000
C40.0385 (10)0.0767 (17)0.0310 (11)0.0000.0012 (8)0.000
C50.0407 (7)0.0714 (12)0.0411 (9)−0.0051 (9)−0.0045 (6)−0.0121 (8)
C60.0358 (7)0.0327 (9)0.0394 (8)−0.0046 (6)0.0022 (6)0.0006 (6)
C70.0460 (8)0.0342 (9)0.0534 (9)−0.0021 (7)0.0130 (7)0.0109 (7)
C80.0432 (8)0.0413 (10)0.0545 (9)0.0028 (8)0.0149 (7)0.0096 (7)
C90.0458 (8)0.0326 (8)0.0462 (9)0.0019 (7)0.0037 (6)0.0032 (7)
C100.0517 (9)0.0389 (9)0.0498 (9)−0.0017 (8)0.0087 (7)0.0134 (7)
C110.0420 (8)0.0440 (10)0.0459 (9)−0.0016 (7)0.0109 (6)0.0079 (7)
C120.0664 (11)0.0465 (11)0.0563 (10)0.0091 (9)0.0037 (8)0.0147 (8)
C130.0728 (12)0.0554 (12)0.0672 (12)0.0188 (10)−0.0016 (9)0.0133 (9)
C140.0435 (15)0.0369 (18)0.0488 (17)−0.0060 (14)0.0005 (13)−0.0014 (14)
N10.0284 (8)0.0319 (10)0.0379 (9)0.000−0.0063 (7)0.000
O10.0278 (7)0.1163 (17)0.0774 (12)0.0000.0094 (7)0.000
O20.0591 (7)0.0415 (7)0.0594 (7)0.0129 (6)0.0127 (5)0.0146 (5)
C1—N11.4577 (16)C8—C91.386 (2)
C1—C61.5084 (19)C8—H80.9300
C1—C21.5661 (19)C9—O21.3696 (18)
C1—H10.9800C9—C101.383 (2)
C2—C141.442 (3)C10—C111.385 (2)
C2—C31.4986 (19)C10—H100.9300
C2—C51.549 (2)C11—H110.9300
C3—O11.221 (2)C12—O21.4169 (18)
C3—C2i1.4986 (19)C12—C131.492 (2)
C4—C51.511 (2)C12—H12A0.9700
C4—C5i1.511 (2)C12—H12B0.9700
C4—H4A0.9700C13—H13A0.9600
C4—H4B0.9700C13—H13B0.9600
C5—H5A0.9700C13—H13C0.9600
C5—H5B0.9700C14—H14A0.9600
C6—C111.3817 (19)C14—H14B0.9600
C6—C71.394 (2)C14—H14C0.9600
C7—C81.372 (2)N1—C1i1.4577 (16)
C7—H70.9300N1—H1N0.86 (2)
N1—C1—C6110.13 (11)C7—C8—H8119.7
N1—C1—C2109.94 (12)C9—C8—H8119.7
C6—C1—C2113.94 (11)O2—C9—C10124.82 (13)
N1—C1—H1107.5O2—C9—C8116.07 (12)
C6—C1—H1107.5C10—C9—C8119.11 (14)
C2—C1—H1107.5C9—C10—C11119.40 (14)
C14—C2—C3105.22 (16)C9—C10—H10120.3
C14—C2—C5109.76 (16)C11—C10—H10120.3
C3—C2—C5107.89 (14)C6—C11—C10122.48 (13)
C14—C2—C1113.46 (17)C6—C11—H11118.8
C3—C2—C1104.89 (12)C10—C11—H11118.8
C5—C2—C1114.89 (11)O2—C12—C13108.82 (14)
O1—C3—C2122.89 (8)O2—C12—H12A109.9
O1—C3—C2i122.89 (8)C13—C12—H12A109.9
C2—C3—C2i114.19 (16)O2—C12—H12B109.9
C5—C4—C5i112.00 (17)C13—C12—H12B109.9
C5—C4—H4A109.2H12A—C12—H12B108.3
C5i—C4—H4A109.2C12—C13—H13A109.5
C5—C4—H4B109.2C12—C13—H13B109.5
C5i—C4—H4B109.2H13A—C13—H13B109.5
H4A—C4—H4B107.9C12—C13—H13C109.5
C4—C5—C2115.05 (14)H13A—C13—H13C109.5
C4—C5—H5A108.5H13B—C13—H13C109.5
C2—C5—H5A108.5C2—C14—H14A109.5
C4—C5—H5B108.5C2—C14—H14B109.5
C2—C5—H5B108.5H14A—C14—H14B109.5
H5A—C5—H5B107.5C2—C14—H14C109.5
C11—C6—C7116.88 (13)H14A—C14—H14C109.5
C11—C6—C1121.07 (12)H14B—C14—H14C109.5
C7—C6—C1122.04 (12)C1—N1—C1i114.64 (14)
C8—C7—C6121.55 (14)C1—N1—H1N108.1 (7)
C8—C7—H7119.2C1i—N1—H1N108.1 (7)
C6—C7—H7119.2C9—O2—C12117.99 (12)
C7—C8—C9120.56 (13)
N1—C1—C2—C14−170.69 (17)N1—C1—C6—C7−39.74 (18)
C6—C1—C2—C1465.14 (19)C2—C1—C6—C784.32 (17)
N1—C1—C2—C3−56.39 (15)C11—C6—C7—C8−0.7 (2)
C6—C1—C2—C3179.44 (11)C1—C6—C7—C8178.36 (14)
N1—C1—C2—C561.89 (17)C6—C7—C8—C9−0.7 (2)
C6—C1—C2—C5−62.28 (17)C7—C8—C9—O2−178.74 (14)
C14—C2—C3—O15.4 (3)C7—C8—C9—C101.8 (2)
C5—C2—C3—O1122.6 (2)O2—C9—C10—C11179.14 (14)
C1—C2—C3—O1−114.5 (2)C8—C9—C10—C11−1.4 (2)
C14—C2—C3—C2i−176.73 (16)C7—C6—C11—C101.1 (2)
C5—C2—C3—C2i−59.60 (19)C1—C6—C11—C10−178.02 (14)
C1—C2—C3—C2i63.32 (19)C9—C10—C11—C60.0 (2)
C5i—C4—C5—C2−46.7 (2)C6—C1—N1—C1i−175.39 (10)
C14—C2—C5—C4166.11 (18)C2—C1—N1—C1i58.26 (18)
C3—C2—C5—C451.97 (17)C10—C9—O2—C12−8.8 (2)
C1—C2—C5—C4−64.62 (19)C8—C9—O2—C12171.71 (15)
N1—C1—C6—C11139.30 (14)C13—C12—O2—C9−173.00 (14)
C2—C1—C6—C11−96.64 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1ii0.86 (2)2.25 (2)3.105 (2)180 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.86 (2)2.25 (2)3.105 (2)180 (2)

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis, stereochemistry and antioxidant properties of various 7-alkylated 2,4-diaryl-3-azabicyclo[3.3.1]nonan-9-ones.

Authors:  Dong Ho Park; Jayachandran Venkatesan; Se-Kwon Kim; Paramasivam Parthiban
Journal:  Bioorg Med Chem Lett       Date:  2012-06-30       Impact factor: 2.823

3.  2,4-Bis(4-propoxyphen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

4.  2,4-Bis(2-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Dong Ho Park; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

5.  2,4-Bis(4-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17

6.  2,4-Bis(4-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-05
  6 in total

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