Literature DB >> 21725006

Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.

Katherine M Pappas1, Vassili N Kouvelis, Elizabeth Saunders, Thomas S Brettin, David Bruce, Chris Detter, Mariya Balakireva, Cliff S Han, Giannis Savvakis, Nikos C Kyrpides, Milton A Typas.   

Abstract

Zymomonas mobilis ATCC 10988 is the type strain of the Z. mobilis subsp. mobilis taxon, members of which are some of the most rigorous ethanol-producing bacteria. Isolated from Agave cactus fermentations in Mexico, ATCC 10988 is one of the first Z. mobilis strains to be described and studied. Its robustness in sucrose-substrate fermentations, physiological characteristics, large number of plasmids, and overall genomic plasticity render this strain important to the study of the species. Here we report the finishing and annotation of the ATCC 10988 chromosomal and plasmid genome.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

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Year:  2011        PMID: 21725006      PMCID: PMC3165638          DOI: 10.1128/JB.05395-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  19 in total

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Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
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Authors:  J Swings; J De Ley
Journal:  Bacteriol Rev       Date:  1977-03

3.  Improved genome annotation for Zymomonas mobilis.

Authors:  Shihui Yang; Katherine M Pappas; Loren J Hauser; Miriam L Land; Gwo-Liang Chen; Gregory B Hurst; Chongle Pan; Vassili N Kouvelis; Milton A Typas; Dale A Pelletier; Dawn M Klingeman; Yun-Juan Chang; Nagiza F Samatova; Steven D Brown
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4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Transposon mutagenesis and strain construction in Zymomonas mobilis.

Authors:  K M Pappas; I Galani; M A Typas
Journal:  J Appl Microbiol       Date:  1997-03       Impact factor: 3.772

6.  Characterization and replication properties of the Zymomonas mobilis ATCC 10988 plasmids pZMO1 and pZMO2.

Authors:  N Arvanitis; K M Pappas; G Kolios; A S Afendra; M A Typas; C Drainas
Journal:  Plasmid       Date:  2000-09       Impact factor: 3.466

7.  Metabolic Engineering of a Pentose Metabolism Pathway in Ethanologenic Zymomonas mobilis.

Authors:  M Zhang; C Eddy; K Deanda; M Finkelstein; S Picataggio
Journal:  Science       Date:  1995-01-13       Impact factor: 47.728

8.  The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4.

Authors:  Jeong-Sun Seo; Hyonyong Chong; Hyun Seok Park; Kyoung-Oh Yoon; Cholhee Jung; Jae Joon Kim; Jin Han Hong; Hyungtae Kim; Jeong-Hyun Kim; Joon-Il Kil; Cheol Ju Park; Hyun-Myung Oh; Jung-Soon Lee; Su-Jung Jin; Hye-Won Um; Hee-Jong Lee; Soo-Jin Oh; Jae Young Kim; Hyung Lyun Kang; Se Yong Lee; Kye Joon Lee; Hyen Sam Kang
Journal:  Nat Biotechnol       Date:  2004-12-12       Impact factor: 54.908

9.  KEGG for linking genomes to life and the environment.

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  17 in total

1.  Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.

Authors:  Vassili N Kouvelis; Karen W Davenport; Thomas S Brettin; David Bruce; Chris Detter; Cliff S Han; Matt Nolan; Roxanne Tapia; Agni Damoulaki; Nikos C Kyrpides; Milton A Typas; Katherine M Pappas
Journal:  J Bacteriol       Date:  2011-07-08       Impact factor: 3.490

2.  Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.

Authors:  Andreas Desiniotis; Vassili N Kouvelis; Karen Davenport; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Lynne A Goodwin; Tanja Woyke; Nikos C Kyrpides; Milton A Typas; Katherine M Pappas
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

3.  Transcriptome profiling of Zymomonas mobilis under ethanol stress.

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Journal:  Biotechnol Biofuels       Date:  2012-10-11       Impact factor: 6.040

4.  Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer.

Authors:  Vassili N Kouvelis; Hazuki Teshima; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Vassileia-Olga Tampakopoulou; Lynne Goodwin; Tanja Woyke; Nikos C Kyrpides; Milton A Typas; Katherine M Pappas
Journal:  Genome Announc       Date:  2014-01-09

5.  Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics.

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7.  Structure of the Zymomonas mobilis respiratory chain: oxygen affinity of electron transport and the role of cytochrome c peroxidase.

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8.  Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

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9.  Modeling of Zymomonas mobilis central metabolism for novel metabolic engineering strategies.

Authors:  Uldis Kalnenieks; Agris Pentjuss; Reinis Rutkis; Egils Stalidzans; David A Fell
Journal:  Front Microbiol       Date:  2014-02-05       Impact factor: 5.640

10.  pZMO7-Derived shuttle vectors for heterologous protein expression and proteomic applications in the ethanol-producing bacterium Zymomonas mobilis.

Authors:  Lok Yan So; Wen-yang Chen; Donnabella C Lacap-Bugler; Myriam Seemann; Rory M Watt
Journal:  BMC Microbiol       Date:  2014-03-15       Impact factor: 3.605

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