Literature DB >> 21742897

Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.

Vassili N Kouvelis1, Karen W Davenport, Thomas S Brettin, David Bruce, Chris Detter, Cliff S Han, Matt Nolan, Roxanne Tapia, Agni Damoulaki, Nikos C Kyrpides, Milton A Typas, Katherine M Pappas.   

Abstract

Zymomonas mobilis is an alphaproteobacterium studied for bioethanol production. Different strains of this organism have been hitherto sequenced; they all belong to the Z. mobilis subsp. mobilis taxon. Here we report the finished and annotated genome sequence of strain ATCC 29192, a cider-spoiling agent isolated in the United Kingdom. ATCC 29192 is the lectotype of the second-best-characterized subspecies of Z. mobilis, Z. mobilis subsp. pomaceae. The nucleotide sequence of ATCC 29192 deviates from that of Z. mobilis subsp. mobilis representatives, which justifies its distinct taxonomic positioning and proves particularly useful for comparative and functional genomic analyses.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

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Year:  2011        PMID： 21742897      PMCID： PMC3165688          DOI： 10.1128/JB.05273-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  21 in total

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Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

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3.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 6.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

7.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 8.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

9.  Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.

Authors:  Katherine M Pappas; Vassili N Kouvelis; Elizabeth Saunders; Thomas S Brettin; David Bruce; Chris Detter; Mariya Balakireva; Cliff S Han; Giannis Savvakis; Nikos C Kyrpides; Milton A Typas
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

Review 10.  Bacteria engineered for fuel ethanol production: current status.

Authors:  B S Dien; M A Cotta; T W Jeffries
Journal:  Appl Microbiol Biotechnol       Date:  2003-09-16       Impact factor: 4.813
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  12 in total

1.  N2 gas is an effective fertilizer for bioethanol production by Zymomonas mobilis.

Authors:  Timothy A Kremer; Breah LaSarre; Amanda L Posto; James B McKinlay
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

2.  Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.

Authors:  Katherine M Pappas; Vassili N Kouvelis; Elizabeth Saunders; Thomas S Brettin; David Bruce; Chris Detter; Mariya Balakireva; Cliff S Han; Giannis Savvakis; Nikos C Kyrpides; Milton A Typas
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

3.  Transcriptome profiling of Zymomonas mobilis under ethanol stress.

Authors:  Ming-Xiong He; Bo Wu; Zong-Xia Shui; Qi-Chun Hu; Wen-Guo Wang; Fu-Rong Tan; Xiao-Yu Tang; Qi-Li Zhu; Ke Pan; Qing Li; Xiao-Hong Su
Journal:  Biotechnol Biofuels       Date:  2012-10-11       Impact factor: 6.040

4.  Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics.

Authors:  Shihui Yang; Chongle Pan; Gregory B Hurst; Lezlee Dice; Brian H Davison; Steven D Brown
Journal:  Front Microbiol       Date:  2014-05-22       Impact factor: 5.640

Review 5.  Zymomonas mobilis: a novel platform for future biorefineries.

Authors:  Ming Xiong He; Bo Wu; Han Qin; Zhi Yong Ruan; Fu Rong Tan; Jing Li Wang; Zong Xia Shui; Li Chun Dai; Qi Li Zhu; Ke Pan; Xiao Yu Tang; Wen Guo Wang; Qi Chun Hu
Journal:  Biotechnol Biofuels       Date:  2014-07-02       Impact factor: 6.040

6.  Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates.

Authors:  Shihui Yang; Mary Ann Franden; Steven D Brown; Yat-Chen Chou; Philip T Pienkos; Min Zhang
Journal:  Biotechnol Biofuels       Date:  2014-09-30       Impact factor: 6.040

7.  The Low Energy-Coupling Respiration in Zymomonas mobilis Accelerates Flux in the Entner-Doudoroff Pathway.

Authors:  Reinis Rutkis; Inese Strazdina; Elina Balodite; Zane Lasa; Nina Galinina; Uldis Kalnenieks
Journal:  PLoS One       Date:  2016-04-21       Impact factor: 3.240

8.  Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

Authors:  Shihui Yang; Chongle Pan; Timothy J Tschaplinski; Gregory B Hurst; Nancy L Engle; Wen Zhou; Phuongan Dam; Ying Xu; Miguel Rodriguez; Lezlee Dice; Courtney M Johnson; Brian H Davison; Steven D Brown
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

Review 9.  Zymomonas mobilis as a model system for production of biofuels and biochemicals.

Authors:  Shihui Yang; Qiang Fei; Yaoping Zhang; Lydia M Contreras; Sagar M Utturkar; Steven D Brown; Michael E Himmel; Min Zhang
Journal:  Microb Biotechnol       Date:  2016-09-15       Impact factor: 5.813

10.  Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution.

Authors:  Chen Chen; Linfeng Wu; Qinghua Cao; Huanhuan Shao; Xuedan Li; Yizheng Zhang; Haiyan Wang; Xuemei Tan
Journal:  PLoS One       Date:  2018-04-25       Impact factor: 3.240
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