Literature DB >> 23045486

Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.

Andreas Desiniotis1, Vassili N Kouvelis, Karen Davenport, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Lynne A Goodwin, Tanja Woyke, Nikos C Kyrpides, Milton A Typas, Katherine M Pappas.   

Abstract

Zymomonas mobilis is an ethanologenic bacterium that has been studied for use in biofuel production. Of the sequenced Zymomonas strains, ATCC 29191 has been described as the phenotypic centrotype of Zymomonas mobilis subsp. mobilis, the taxon that harbors the highest ethanol-producing Z. mobilis strains. ATCC 29191 was isolated in Kinshasa, Congo, from palm wine fermentations. This strain is reported to be a robust levan producer, while in recent years it has been employed in studies addressing Z. mobilis respiration. Here we announce the finishing and annotation of the ATCC 29191 genome, which comprises one chromosome and three plasmids.

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Year:  2012        PMID: 23045486      PMCID: PMC3486092          DOI: 10.1128/JB.01398-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  18 in total

1.  A greedy algorithm for aligning DNA sequences.

Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

Review 2.  The biology of Zymomonas.

Authors:  J Swings; J De Ley
Journal:  Bacteriol Rev       Date:  1977-03

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Improved genome annotation for Zymomonas mobilis.

Authors:  Shihui Yang; Katherine M Pappas; Loren J Hauser; Miriam L Land; Gwo-Liang Chen; Gregory B Hurst; Chongle Pan; Vassili N Kouvelis; Milton A Typas; Dale A Pelletier; Dawn M Klingeman; Yun-Juan Chang; Nagiza F Samatova; Steven D Brown
Journal:  Nat Biotechnol       Date:  2009-10       Impact factor: 54.908

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.

Authors:  Katherine M Pappas; Vassili N Kouvelis; Elizabeth Saunders; Thomas S Brettin; David Bruce; Chris Detter; Mariya Balakireva; Cliff S Han; Giannis Savvakis; Nikos C Kyrpides; Milton A Typas
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

Review 8.  Physiology of Zymomonas mobilis: some unanswered questions.

Authors:  Uldis Kalnenieks
Journal:  Adv Microb Physiol       Date:  2006       Impact factor: 3.517

9.  Transposon mutagenesis and strain construction in Zymomonas mobilis.

Authors:  K M Pappas; I Galani; M A Typas
Journal:  J Appl Microbiol       Date:  1997-03       Impact factor: 3.772

Review 10.  Zymomonas mobilis for fuel ethanol and higher value products.

Authors:  P L Rogers; Y J Jeon; K J Lee; H G Lawford
Journal:  Adv Biochem Eng Biotechnol       Date:  2007       Impact factor: 2.635

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  16 in total

1.  Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics.

Authors:  Shihui Yang; Chongle Pan; Gregory B Hurst; Lezlee Dice; Brian H Davison; Steven D Brown
Journal:  Front Microbiol       Date:  2014-05-22       Impact factor: 5.640

Review 2.  Zymomonas mobilis: a novel platform for future biorefineries.

Authors:  Ming Xiong He; Bo Wu; Han Qin; Zhi Yong Ruan; Fu Rong Tan; Jing Li Wang; Zong Xia Shui; Li Chun Dai; Qi Li Zhu; Ke Pan; Xiao Yu Tang; Wen Guo Wang; Qi Chun Hu
Journal:  Biotechnol Biofuels       Date:  2014-07-02       Impact factor: 6.040

3.  Structure of the Zymomonas mobilis respiratory chain: oxygen affinity of electron transport and the role of cytochrome c peroxidase.

Authors:  Elina Balodite; Inese Strazdina; Nina Galinina; Samantha McLean; Reinis Rutkis; Robert K Poole; Uldis Kalnenieks
Journal:  Microbiology (Reading)       Date:  2014-06-30       Impact factor: 2.777

4.  Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates.

Authors:  Shihui Yang; Mary Ann Franden; Steven D Brown; Yat-Chen Chou; Philip T Pienkos; Min Zhang
Journal:  Biotechnol Biofuels       Date:  2014-09-30       Impact factor: 6.040

5.  The Low Energy-Coupling Respiration in Zymomonas mobilis Accelerates Flux in the Entner-Doudoroff Pathway.

Authors:  Reinis Rutkis; Inese Strazdina; Elina Balodite; Zane Lasa; Nina Galinina; Uldis Kalnenieks
Journal:  PLoS One       Date:  2016-04-21       Impact factor: 3.240

6.  Genome Sequence of Zymomonas mobilis subsp. mobilis NRRL B-1960.

Authors:  Katherine Chacon-Vargas; Alexandra A Chirino; Meghan M Davis; Sophia A Debler; Wynn Raphael Haimer; Justin J Wilbur; Xiaoli Mo; Baxter W Worthing; Ethan G Wainblat; Shu Zhao; John G Gibbons
Journal:  Genome Announc       Date:  2017-07-27

7.  Modeling of Zymomonas mobilis central metabolism for novel metabolic engineering strategies.

Authors:  Uldis Kalnenieks; Agris Pentjuss; Reinis Rutkis; Egils Stalidzans; David A Fell
Journal:  Front Microbiol       Date:  2014-02-05       Impact factor: 5.640

Review 8.  Zymomonas mobilis as a model system for production of biofuels and biochemicals.

Authors:  Shihui Yang; Qiang Fei; Yaoping Zhang; Lydia M Contreras; Sagar M Utturkar; Steven D Brown; Michael E Himmel; Min Zhang
Journal:  Microb Biotechnol       Date:  2016-09-15       Impact factor: 5.813

9.  Thermotolerant genes essential for survival at a critical high temperature in thermotolerant ethanologenic Zymomonas mobilis TISTR 548.

Authors:  Kannikar Charoensuk; Tomoko Sakurada; Amina Tokiyama; Masayuki Murata; Tomoyuki Kosaka; Pornthap Thanonkeo; Mamoru Yamada
Journal:  Biotechnol Biofuels       Date:  2017-08-24       Impact factor: 6.040

10.  Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution.

Authors:  Chen Chen; Linfeng Wu; Qinghua Cao; Huanhuan Shao; Xuedan Li; Yizheng Zhang; Haiyan Wang; Xuemei Tan
Journal:  PLoS One       Date:  2018-04-25       Impact factor: 3.240

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