Literature DB >> 21663790

Chromatin connections to pluripotency and cellular reprogramming.

Stuart H Orkin1, Konrad Hochedlinger.   

Abstract

The pluripotent state of embryonic stem cells (ESCs) provides a unique perspective on regulatory programs that govern self-renewal and differentiation and somatic cell reprogramming. Here, we review the highly connected protein and transcriptional networks that maintain pluripotency and how they are intertwined with factors that affect chromatin structure and function. The complex interrelationships between pluripotency and chromatin factors are illustrated by X chromosome inactivation, regulatory control by noncoding RNAs, and environmental influences on cell states. Manipulation of cell state through the process of transdifferentiation suggests that environmental cues may direct transcriptional programs as cells enter a transiently "plastic" state during reprogramming.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21663790      PMCID: PMC4858411          DOI: 10.1016/j.cell.2011.05.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  46 in total

1.  LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism.

Authors:  Peter Cartwright; Cameron McLean; Allan Sheppard; Duane Rivett; Karen Jones; Stephen Dalton
Journal:  Development       Date:  2005-01-26       Impact factor: 6.868

2.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

3.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

4.  Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.

Authors:  Yen-Sin Ang; Su-Yi Tsai; Dung-Fang Lee; Jonathan Monk; Jie Su; Kajan Ratnakumar; Junjun Ding; Yongchao Ge; Henia Darr; Betty Chang; Jianlong Wang; Michael Rendl; Emily Bernstein; Christoph Schaniel; Ihor R Lemischka
Journal:  Cell       Date:  2011-04-07       Impact factor: 41.582

5.  H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Authors:  Menno P Creyghton; Styliani Markoulaki; Stuart S Levine; Jacob Hanna; Michael A Lodato; Ky Sha; Richard A Young; Rudolf Jaenisch; Laurie A Boyer
Journal:  Cell       Date:  2008-11-06       Impact factor: 41.582

6.  Embryonic stem cell-specific microRNAs promote induced pluripotency.

Authors:  Robert L Judson; Joshua E Babiarz; Monica Venere; Robert Blelloch
Journal:  Nat Biotechnol       Date:  2009-04-12       Impact factor: 54.908

Review 7.  The Polycomb complex PRC2 and its mark in life.

Authors:  Raphaël Margueron; Danny Reinberg
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

8.  An extended transcriptional network for pluripotency of embryonic stem cells.

Authors:  Jonghwan Kim; Jianlin Chu; Xiaohua Shen; Jianlong Wang; Stuart H Orkin
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

9.  The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting.

Authors:  Mary E Donohoe; Susana S Silva; Stefan F Pinter; Na Xu; Jeannie T Lee
Journal:  Nature       Date:  2009-06-17       Impact factor: 49.962

10.  Nanog is the gateway to the pluripotent ground state.

Authors:  Jose Silva; Jennifer Nichols; Thorold W Theunissen; Ge Guo; Anouk L van Oosten; Ornella Barrandon; Jason Wray; Shinya Yamanaka; Ian Chambers; Austin Smith
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

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  200 in total

1.  Retroviral infection of hES cells produces random-like integration patterns.

Authors:  Kwang-il Lim
Journal:  Mol Cells       Date:  2012-04-20       Impact factor: 5.034

2.  Early aberrations in chromatin dynamics in embryos produced under in vitro conditions.

Authors:  Rahul S Deshmukh; Olga Østrup; Frantisek Strejcek; Morten Vejlsted; Andrea Lucas-Hahn; Bjorn Petersen; Juan Li; Henrik Callesen; Heiner Niemann; Poul Hyttel
Journal:  Cell Reprogram       Date:  2012-04-02       Impact factor: 1.987

3.  The polycomb group protein L3mbtl2 assembles an atypical PRC1-family complex that is essential in pluripotent stem cells and early development.

Authors:  Jinzhong Qin; Warren A Whyte; Endre Anderssen; Effie Apostolou; Hsu-Hsin Chen; Schahram Akbarian; Roderick T Bronson; Konrad Hochedlinger; Sridhar Ramaswamy; Richard A Young; Hanno Hock
Journal:  Cell Stem Cell       Date:  2012-07-05       Impact factor: 24.633

4.  The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming.

Authors:  Junjie Lu; Hu Li; Ming Hu; Takayo Sasaki; Anna Baccei; David M Gilbert; Jun S Liu; James J Collins; Paul H Lerou
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

Review 5.  Zygotic genome activation during the maternal-to-zygotic transition.

Authors:  Miler T Lee; Ashley R Bonneau; Antonio J Giraldez
Journal:  Annu Rev Cell Dev Biol       Date:  2014-08-11       Impact factor: 13.827

Review 6.  Learning the molecular mechanisms of the reprogramming factors: let's start from microRNAs.

Authors:  Chao-Shun Yang; Tariq M Rana
Journal:  Mol Biosyst       Date:  2012-10-05

7.  Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells.

Authors:  Yongyan Wu; Zekun Guo; Ye Liu; Bo Tang; Yi Wang; Liping Yang; Juan Du; Yong Zhang
Journal:  Mol Biol Rep       Date:  2012-12-20       Impact factor: 2.316

Review 8.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

9.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

10.  AtMMS21, an SMC5/6 complex subunit, is involved in stem cell niche maintenance and DNA damage responses in Arabidopsis roots.

Authors:  Panglian Xu; Dongke Yuan; Ming Liu; Chunxin Li; Yiyang Liu; Shengchun Zhang; Nan Yao; Chengwei Yang
Journal:  Plant Physiol       Date:  2013-02-20       Impact factor: 8.340

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