Literature DB >> 11508838

Ionization properties of titratable groups in ribonuclease T1. I. pKa values in the native state determined by two-dimensional heteronuclear NMR spectroscopy.

N Spitzner1, F Löhr, S Pfeiffer, A Koumanov, A Karshikoff, H Rüterjans.   

Abstract

pKa values of amino acid side chains of ribonuclease T1 have been determined from the pH dependence of 13C and 15N resonances. It was possible to derive pKa values of single protonation or deprotonation sites of carboxylate and imidazole groups. Deviations from pKa values of free amino acids could be interpreted with electrostatic interactions of corresponding side chains with the protein environment. In particular, the interaction between H27 and E82 led to an increase of the H27 pKa and a decrease of the E82 pKa. The pKa of E28 at the C-terminal end of the alpha-helix was increased because of the dipolar character of the alpha-helix. D76 did not titrate in the investigated pH range of about 2-9. From the chemical shift value this buried side chain seems to be protonated. The pKa values of side chains in the active site deviate from a normal behaviour. The lower pKa value of E58 may be interpreted with the close proximity of this side chain with positively charged H40 and R77. A novel two-dimensional 1H(13Cdelta)13Cgamma correlation experiment was developed to observe the pH dependence of the chemical shifts of the Cgamma resonances of histidine residues. From the inspection of the Cgamma chemical shift-pH profiles it was possible to determine the predominant tautomeric form for the histidine residues at higher pH values.

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Year:  2001        PMID: 11508838     DOI: 10.1007/s002490100138

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  7 in total

1.  Improved accuracy in measuring one-bond and two-bond (15)N, (13)C (α) coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy.

Authors:  Frank Löhr; Sina Reckel; Susanne Stefer; Volker Dötsch; Jürgen M Schmidt
Journal:  J Biomol NMR       Date:  2011-06-07       Impact factor: 2.835

2.  Triple-resonance methods for complete resonance assignment of aromatic protons and directly bound heteronuclei in histidine and tryptophan residues.

Authors:  Frank Löhr; Vladimir V Rogov; Meichen Shi; Frank Bernhard; Volker Dötsch
Journal:  J Biomol NMR       Date:  2005-08       Impact factor: 2.835

3.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

4.  Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.

Authors:  Frank Löhr; Robert Hänsel; Vladimir V Rogov; Volker Dötsch
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

5.  Tryptophan conformations associated with partial unfolding in ribonuclease T1.

Authors:  Samuel L C Moors; Abel Jonckheer; Marc De Maeyer; Yves Engelborghs; Arnout Ceulemans
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

6.  Electrostatically induced pKa shifts in oligopeptides: the upshot of neighboring side chains.

Authors:  Amir Norouzy; Alexandra I Lazar; Mohammad Hossein Karimi-Jafari; Rohoullah Firouzi; Werner M Nau
Journal:  Amino Acids       Date:  2022-01-24       Impact factor: 3.520

7.  PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values.

Authors:  Christopher P Toseland; Helen McSparron; Matthew N Davies; Darren R Flower
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

  7 in total

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