Literature DB >> 23667047

Nuclear magnetic resonance spectroscopy of the circadian clock of cyanobacteria.

Yong-Gang Chang1, Roger Tseng, Nai-Wei Kuo, Andy LiWang.   

Abstract

The most well-understood circadian clock at the level of molecular mechanisms is that of cyanobacteria. This overview is on how solution-state nuclear magnetic resonance (NMR) spectroscopy has contributed to this understanding. By exciting atomic spin-½ nuclei in a strong magnetic field, NMR obtains information on their chemical environments, inter-nuclear distances, orientations, and motions. NMR protein samples are typically aqueous, often at near-physiological pH, ionic strength, and temperature. The level of information obtainable by NMR depends on the quality of the NMR sample, by which we mean the solubility and stability of proteins. Here, we use examples from our laboratory to illustrate the advantages and limitations of the technique.

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Year:  2013        PMID: 23667047      PMCID: PMC6296334          DOI: 10.1093/icb/ict054

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.326


  60 in total

1.  A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria.

Authors:  H Iwasaki; S B Williams; Y Kitayama; M Ishiura; S S Golden; T Kondo
Journal:  Cell       Date:  2000-04-14       Impact factor: 41.582

2.  The bacterial replicative helicase DnaB evolved from a RecA duplication.

Authors:  D D Leipe; L Aravind; N V Grishin; E V Koonin
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

Review 3.  The FLAG peptide, a versatile fusion tag for the purification of recombinant proteins.

Authors:  A Einhauer; A Jungbauer
Journal:  J Biochem Biophys Methods       Date:  2001-10-30

4.  Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism.

Authors:  Stanly B Williams; Ioannis Vakonakis; Susan S Golden; Andy C LiWang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-15       Impact factor: 11.205

5.  KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria.

Authors:  Hideo Iwasaki; Taeko Nishiwaki; Yohko Kitayama; Masato Nakajima; Takao Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

6.  KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system.

Authors:  Yohko Kitayama; Hideo Iwasaki; Taeko Nishiwaki; Takao Kondo
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

7.  NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction.

Authors:  Ioannis Vakonakis; Jingchuan Sun; Tianfu Wu; Andreas Holzenburg; Susan S Golden; Andy C LiWang
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-28       Impact factor: 11.205

8.  Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC.

Authors:  Fumio Hayashi; Hiroki Ito; Masayasu Fujita; Ryo Iwase; Tatsuya Uzumaki; Masahiro Ishiura
Journal:  Biochem Biophys Res Commun       Date:  2004-03-26       Impact factor: 3.575

9.  ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC.

Authors:  Fumio Hayashi; Hirofumi Suzuki; Ryo Iwase; Tatsuya Uzumaki; Asako Miyake; Jian-Ren Shen; Katsumi Imada; Yukio Furukawa; Koji Yonekura; Keiichi Namba; Masahiro Ishiura
Journal:  Genes Cells       Date:  2003-03       Impact factor: 1.891

10.  A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins.

Authors:  N K Goto; K H Gardner; G A Mueller; R C Willis; L E Kay
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

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