Literature DB >> 29700756

Complete assignment of Ala, Ile, Leu, Met and Val methyl groups of human blood group A and B glycosyltransferases using lanthanide-induced pseudocontact shifts and methyl-methyl NOESY.

Friedemann Flügge1, Thomas Peters2.   

Abstract

Human blood group A and B glycosyltransferases (GTA, GTB) are highly homologous glycosyltransferases. A number of high-resolution crystal structures is available showing that these enzymes convert from an open conformation into a catalytically active closed conformation upon substrate binding. However, the mechanism of glycosyltransfer is still under debate, and the precise nature as well as the time scales of conformational transitions are unknown. NMR offers a variety of experiments to shine more light on these unresolved questions. Therefore, in a first step we have assigned all methyl resonance signals in MILVA labeled samples of GTA and GTB, still a challenging task for 70 kDa homodimeric proteins. Assignments were obtained from methyl-methyl NOESY experiments, and from measurements of lanthanide-induced pseudocontact shifts (PCS) using high resolution crystal structures as templates. PCSs and chemical shift perturbations, induced by substrate analogue binding, suggest that the fully closed state is not adopted in the presence of lanthanide ions.

Entities:  

Keywords:  4D HMQC-NOESY-HMQC; Human blood group A and B glycosyltransferases; MILVA labeling; Methyl-TROSY; Paramagnetic relaxation enhancement

Mesh:

Substances:

Year:  2018        PMID: 29700756     DOI: 10.1007/s10858-018-0183-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  46 in total

1.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR.

Authors:  Ioannis Gelis; Alexandre M J J Bonvin; Dimitra Keramisanou; Marina Koukaki; Giorgos Gouridis; Spyridoula Karamanou; Anastassios Economou; Charalampos G Kalodimos
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

3.  Equivalency of binding sites in protein-ligand complexes revealed by time-resolved tandem mass spectrometry.

Authors:  Glen K Shoemaker; Elena N Kitova; Monica M Palcic; John S Klassen
Journal:  J Am Chem Soc       Date:  2007-06-20       Impact factor: 15.419

4.  PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts.

Authors:  Simon P Skinner; Mois Moshev; Mathias A S Hass; Peter H J Keizers; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2013-03-23       Impact factor: 2.835

5.  SHIFTX2: significantly improved protein chemical shift prediction.

Authors:  Beomsoo Han; Yifeng Liu; Simon W Ginzinger; David S Wishart
Journal:  J Biomol NMR       Date:  2011-03-30       Impact factor: 2.835

6.  Protein NMR Studies of Substrate Binding to Human Blood Group A and B Glycosyltransferases.

Authors:  Lena Lisbeth Grimm; Sophie Weissbach; Friedemann Flügge; Nora Begemann; Monica M Palcic; Thomas Peters
Journal:  Chembiochem       Date:  2017-04-10       Impact factor: 3.164

7.  Comparative study of substrate and product binding to the human ABO(H) blood group glycosyltransferases.

Authors:  Naoto Soya; Glen K Shoemaker; Monica M Palcic; John S Klassen
Journal:  Glycobiology       Date:  2009-07-31       Impact factor: 4.313

8.  A single point mutation reverses the donor specificity of human blood group B-synthesizing galactosyltransferase.

Authors:  Sandra L Marcus; Robert Polakowski; Nina O L Seto; Eeva Leinala; Svetlana Borisova; Antoine Blancher; Francis Roubinet; Stephen V Evans; Monica M Palcic
Journal:  J Biol Chem       Date:  2003-01-15       Impact factor: 5.157

9.  The structural basis for specificity in human ABO(H) blood group biosynthesis.

Authors:  Sonia I Patenaude; Nina O L Seto; Svetlana N Borisova; Adam Szpacenko; Sandra L Marcus; Monica M Palcic; Stephen V Evans
Journal:  Nat Struct Biol       Date:  2002-09

10.  An economical method for production of (2)H, (13)CH3-threonine for solution NMR studies of large protein complexes: application to the 670 kDa proteasome.

Authors:  Algirdas Velyvis; Amy M Ruschak; Lewis E Kay
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

View more
  6 in total

1.  An NMR look at an engineered PET depolymerase.

Authors:  Cyril Charlier; Sabine Gavalda; Vinciane Borsenberger; Sophie Duquesne; Alain Marty; Vincent Tournier; Guy Lippens
Journal:  Biophys J       Date:  2022-07-06       Impact factor: 3.699

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

3.  Sparse isotope labeling for nuclear magnetic resonance (NMR) of glycoproteins using 13C-glucose.

Authors:  Monique J Rogals; Jeong-Yeh Yang; Robert V Williams; Kelley W Moremen; I Jonathan Amster; James H Prestegard
Journal:  Glycobiology       Date:  2021-05-03       Impact factor: 4.313

4.  Ligand-induced structural transitions combined with paramagnetic ions facilitate unambiguous NMR assignments of methyl groups in large proteins.

Authors:  Lars Mühlberg; Tuncay Alarcin; Thorben Maass; Robert Creutznacher; Richard Küchler; Alvaro Mallagaray
Journal:  J Biomol NMR       Date:  2022-04-10       Impact factor: 2.582

5.  Insights into Allosteric Control of Human Blood Group A and B Glycosyltransferases from Dynamic NMR.

Authors:  Friedemann Flügge; Thomas Peters
Journal:  ChemistryOpen       Date:  2019-06-11       Impact factor: 2.911

6.  Assignment of Ala, Ile, LeuproS, Met, and ValproS methyl groups of the protruding domain of murine norovirus capsid protein VP1 using methyl-methyl NOEs, site directed mutagenesis, and pseudocontact shifts.

Authors:  Thorben Maass; Leon Torben Westermann; Robert Creutznacher; Alvaro Mallagaray; Jasmin Dülfer; Charlotte Uetrecht; Thomas Peters
Journal:  Biomol NMR Assign       Date:  2022-01-20       Impact factor: 0.731

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.