Literature DB >> 21621281

Stem cells and reprogramming: breaking the epigenetic barrier?

Yen-Sin Ang1, Alexandre Gaspar-Maia, Ihor R Lemischka, Emily Bernstein.   

Abstract

Increasing evidence suggests that epigenetic regulation is key to the maintenance of the stem cell state. Chromatin is the physiological form of eukaryotic genomes and the substrate for epigenetic marking, including DNA methylation, post-translational modifications of histones and the exchange of core histones with histone variants. The chromatin template undergoes significant reorganization during embryonic stem cell (ESC) differentiation and somatic cell reprogramming (SCR). Intriguingly, remodeling of the epigenome appears to be a crucial barrier that must be surmounted for efficient SCR. This area of research has gained significant attention due to the importance of ESCs in modeling and treating human disease. Here we review the epigenetic mechanisms that are key for maintenance of the ESC state, ESC differentiation and SCR. We focus on murine and human ESCs and induced pluripotent stem cells, and highlight the pharmacological approaches used to study or manipulate cell fate where relevant.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21621281      PMCID: PMC3128683          DOI: 10.1016/j.tips.2011.03.002

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  64 in total

1.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

2.  Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations.

Authors:  Christopher J Lengner; Alexander A Gimelbrant; Jennifer A Erwin; Albert Wu Cheng; Matthew G Guenther; G Grant Welstead; Raaji Alagappan; Garrett M Frampton; Ping Xu; Julien Muffat; Sandro Santagata; Doug Powers; C Brent Barrett; Richard A Young; Jeannie T Lee; Rudolf Jaenisch; Maisam Mitalipova
Journal:  Cell       Date:  2010-05-13       Impact factor: 41.582

Review 3.  Why myc? An unexpected ingredient in the stem cell cocktail.

Authors:  Paul S Knoepfler
Journal:  Cell Stem Cell       Date:  2008-01-10       Impact factor: 24.633

4.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

5.  SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state.

Authors:  Steve Bilodeau; Michael H Kagey; Garrett M Frampton; Peter B Rahl; Richard A Young
Journal:  Genes Dev       Date:  2009-11-01       Impact factor: 11.361

6.  A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Authors:  Na-Yu Chia; Yun-Shen Chan; Bo Feng; Xinyi Lu; Yuriy L Orlov; Dimitri Moreau; Pankaj Kumar; Lin Yang; Jianming Jiang; Mei-Sheng Lau; Mikael Huss; Boon-Seng Soh; Petra Kraus; Pin Li; Thomas Lufkin; Bing Lim; Neil D Clarke; Frederic Bard; Huck-Hui Ng
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

7.  Oct4 and klf4 reprogram dermal papilla cells into induced pluripotent stem cells.

Authors:  Su-Yi Tsai; Carlos Clavel; Soo Kim; Yen-Sin Ang; Laura Grisanti; Dung-Fang Lee; Kevin Kelley; Michael Rendl
Journal:  Stem Cells       Date:  2010-02       Impact factor: 6.277

8.  H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Authors:  Menno P Creyghton; Styliani Markoulaki; Stuart S Levine; Jacob Hanna; Michael A Lodato; Ky Sha; Richard A Young; Rudolf Jaenisch; Laurie A Boyer
Journal:  Cell       Date:  2008-11-06       Impact factor: 41.582

Review 9.  Systems biology of stem cell fate and cellular reprogramming.

Authors:  Ben D Macarthur; Avi Ma'ayan; Ihor R Lemischka
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09-09       Impact factor: 94.444

10.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

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  20 in total

1.  Retroviral infection of hES cells produces random-like integration patterns.

Authors:  Kwang-il Lim
Journal:  Mol Cells       Date:  2012-04-20       Impact factor: 5.034

2.  Letters to the editor.

Authors: 
Journal:  Ochsner J       Date:  2013

3.  Mathematical approaches to modeling development and reprogramming.

Authors:  Rob Morris; Ignacio Sancho-Martinez; Tatyana O Sharpee; Juan Carlos Izpisua Belmonte
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-20       Impact factor: 11.205

Review 4.  Reprogramming: identifying the mechanisms that safeguard cell identity.

Authors:  Justin Brumbaugh; Bruno Di Stefano; Konrad Hochedlinger
Journal:  Development       Date:  2019-12-02       Impact factor: 6.868

Review 5.  A role for polyamine regulators in ESC self-renewal.

Authors:  Tianyun Zhao; Kim Jee Goh; Huck Hui Ng; Leah A Vardy
Journal:  Cell Cycle       Date:  2012-11-19       Impact factor: 4.534

Review 6.  Stem cells and the developing mammary gland.

Authors:  Maisam Makarem; Benjamin T Spike; Christopher Dravis; Nagarajan Kannan; Geoffrey M Wahl; Connie J Eaves
Journal:  J Mammary Gland Biol Neoplasia       Date:  2013-04-27       Impact factor: 2.673

7.  RNF20 and USP44 regulate stem cell differentiation by modulating H2B monoubiquitylation.

Authors:  Gilad Fuchs; Efrat Shema; Rita Vesterman; Eran Kotler; Zohar Wolchinsky; Sylvia Wilder; Lior Golomb; Ariel Pribluda; Feng Zhang; Mahmood Haj-Yahya; Ester Feldmesser; Ashraf Brik; Xiaochun Yu; Jacob Hanna; Daniel Aberdam; Eytan Domany; Moshe Oren
Journal:  Mol Cell       Date:  2012-06-08       Impact factor: 17.970

8.  Hematopoietic Stem Cells Count and Remember Self-Renewal Divisions.

Authors:  Jeffrey M Bernitz; Huen Suk Kim; Ben MacArthur; Hans Sieburg; Kateri Moore
Journal:  Cell       Date:  2016-11-10       Impact factor: 41.582

Review 9.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

10.  Imprecise DNMT1 activity coupled with neighbor-guided correction enables robust yet flexible epigenetic inheritance.

Authors:  Qiujun Wang; Guang Yu; Xuan Ming; Weikun Xia; Xiguang Xu; Yu Zhang; Wenhao Zhang; Yuanyuan Li; Chunyi Huang; Hehuang Xie; Bing Zhu; Wei Xie
Journal:  Nat Genet       Date:  2020-07-20       Impact factor: 38.330

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