Literature DB >> 21589456

N,N'-Di-tert-butyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.   

Abstract

In the title compound, C(15)H(24)F(2)N(3)O(2)P, the phosphoryl and carbonyl groups adopt anti positions relative to each other. The P atom is in a tetra-hedral coordination environment and the environment of each N atom is essentially planar. In the crystal, adjacent mol-ecules are linked via N-H⋯O=P and N-H⋯O=C hydrogen bonds into an extended chain parallel to the a axis. The crystal studied was a non-merohedral twin with a minor twin component of 36.4 (1)%.

Entities:  

Year:  2010        PMID: 21589456      PMCID: PMC3011709          DOI: 10.1107/S1600536810045927

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Carbacyl­amido­phosphates with a C(O)NHP(O) skeleton have attracted attention because of their roles as O,O′-donor ligands for metal complexation, see: Gholivand et al. (2010 ▶). CELL_NOW (Sheldrick, 2008a ▶) was used to generate the components of the twin.

Experimental

Crystal data

C15H24F2N3O2P M = 347.34 Triclinic, a = 9.8142 (12) Å b = 10.2886 (13) Å c = 10.6091 (16) Å α = 117.171 (4)° β = 98.636 (4)° γ = 97.988 (3)° V = 915.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 200 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART X2S benchtop CCD area-detector diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 2008a ▶) T min = 0.948, T max = 0.965 7847 measured reflections 4225 independent reflections 3525 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.121 S = 1.05 4225 reflections 224 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.27 e Å−3 Data collection: GIS (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b); molecular graphics: SHELXTL (Sheldrick, 2008b); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045927/ng5051sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045927/ng5051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H24F2N3O2PZ = 2
Mr = 347.34F(000) = 368
Triclinic, P1Dx = 1.260 Mg m3
a = 9.8142 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.2886 (13) ÅCell parameters from 2837 reflections
c = 10.6091 (16) Åθ = 2.2–27.9°
α = 117.171 (4)°µ = 0.18 mm1
β = 98.636 (4)°T = 200 K
γ = 97.988 (3)°Block, colorless
V = 915.6 (2) Å30.30 × 0.25 × 0.20 mm
Bruker SMART X2S benchtop CCD area-detector diffractometer4225 independent reflections
Radiation source: micro focus sealed tube3525 reflections with I > 2σ(I)
doubly curved silicon crystalRint = 0.057
φ and ω scansθmax = 27.9°, θmin = 2.2°
Absorption correction: multi-scan (TWINABS; Sheldrick, 2008a)h = −12→12
Tmin = 0.948, Tmax = 0.965k = −13→12
7847 measured reflectionsl = 0→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0548P)2 + 0.3384P] where P = (Fo2 + 2Fc2)/3
4225 reflections(Δ/σ)max = 0.007
224 parametersΔρmax = 0.35 e Å3
3 restraintsΔρmin = −0.26 e Å3
Experimental. Data refinement indicated a twin system and program Cell_Now (Sheldrick, 2008) was used to generate the two components of the twin (63.6 (1)/36.4 ratio). Data was integrated using SAINT and corrected for absorption using TWINABS (Shelrick, 2008).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.18621 (6)0.39181 (6)0.41180 (6)0.02191 (14)
F10.4134 (2)0.6847 (2)0.94162 (17)0.0611 (5)
F20.23506 (19)0.89470 (17)0.66107 (18)0.0523 (4)
O10.45094 (16)0.62402 (19)0.64132 (18)0.0363 (4)
O20.03152 (16)0.32970 (16)0.36977 (17)0.0305 (4)
N10.20980 (18)0.55903 (19)0.56848 (19)0.0241 (4)
H1N0.1375 (17)0.592 (3)0.595 (3)0.029*
N20.2528 (2)0.4227 (2)0.29337 (19)0.0276 (4)
H2N0.3378 (14)0.411 (3)0.293 (3)0.033*
N30.28600 (19)0.2910 (2)0.4441 (2)0.0260 (4)
H3N0.3739 (13)0.318 (3)0.449 (3)0.031*
C10.3611 (3)0.7959 (3)0.9332 (3)0.0404 (6)
C20.3480 (4)0.9159 (4)1.0587 (3)0.0597 (9)
H2A0.37670.92161.15110.072*
C30.2927 (4)1.0271 (4)1.0475 (4)0.0675 (10)
H3A0.28071.10871.13270.081*
C40.2544 (3)1.0216 (3)0.9142 (4)0.0593 (9)
H4A0.21831.09950.90690.071*
C50.2699 (3)0.8998 (3)0.7919 (3)0.0386 (6)
C60.3228 (2)0.7840 (2)0.7961 (2)0.0283 (5)
C70.3352 (2)0.6488 (2)0.6613 (2)0.0243 (4)
C80.1874 (3)0.4811 (3)0.1991 (2)0.0353 (5)
C90.1621 (4)0.6356 (3)0.2928 (3)0.0580 (9)
H9A0.25180.70420.35980.087*
H9B0.09400.62750.34910.087*
H9C0.12410.67470.22970.087*
C100.0477 (3)0.3691 (4)0.0967 (3)0.0569 (8)
H10A−0.02270.37090.15360.085*
H10B0.06400.26770.04780.085*
H10C0.01260.39720.02340.085*
C110.2913 (4)0.4907 (4)0.1095 (3)0.0535 (7)
H11A0.38090.56110.17500.080*
H11B0.25150.52630.04390.080*
H11C0.30840.39110.05180.080*
C120.2566 (3)0.1929 (3)0.5095 (3)0.0336 (5)
C130.1325 (3)0.0588 (3)0.4049 (4)0.0579 (8)
H13A0.15330.00730.30880.087*
H13B0.04600.09450.39560.087*
H13C0.1188−0.01120.44330.087*
C140.2251 (5)0.2791 (4)0.6581 (4)0.0677 (10)
H14A0.30570.36420.72320.102*
H14B0.20930.21230.69970.102*
H14C0.14000.31650.64700.102*
C150.3893 (3)0.1343 (4)0.5243 (4)0.0525 (7)
H15A0.40900.08020.42800.079*
H15B0.37420.06610.56450.079*
H15C0.47010.21910.58980.079*
U11U22U33U12U13U23
P10.0176 (2)0.0218 (2)0.0242 (3)0.00825 (19)0.00585 (19)0.0082 (2)
F10.0786 (14)0.0696 (11)0.0426 (9)0.0253 (10)0.0115 (8)0.0322 (9)
F20.0626 (11)0.0417 (8)0.0565 (10)0.0198 (8)0.0103 (8)0.0264 (8)
O10.0199 (7)0.0431 (9)0.0381 (9)0.0093 (7)0.0107 (7)0.0117 (7)
O20.0185 (7)0.0288 (7)0.0359 (8)0.0083 (6)0.0062 (6)0.0083 (7)
N10.0179 (8)0.0251 (8)0.0258 (8)0.0100 (7)0.0080 (7)0.0073 (7)
N20.0238 (9)0.0369 (10)0.0278 (9)0.0147 (8)0.0093 (8)0.0174 (8)
N30.0190 (9)0.0280 (9)0.0367 (10)0.0111 (7)0.0116 (8)0.0173 (8)
C10.0370 (14)0.0419 (13)0.0338 (12)0.0027 (11)0.0089 (10)0.0131 (11)
C20.0572 (19)0.067 (2)0.0259 (13)0.0018 (16)0.0120 (12)0.0022 (13)
C30.061 (2)0.0446 (17)0.0517 (18)0.0063 (15)0.0210 (16)−0.0140 (14)
C40.0560 (19)0.0317 (13)0.067 (2)0.0160 (13)0.0164 (16)0.0030 (14)
C50.0337 (13)0.0274 (11)0.0418 (13)0.0036 (10)0.0092 (11)0.0072 (10)
C60.0205 (9)0.0265 (10)0.0276 (10)0.0022 (8)0.0075 (8)0.0052 (8)
C70.0210 (10)0.0264 (10)0.0252 (10)0.0067 (8)0.0083 (8)0.0112 (8)
C80.0437 (14)0.0373 (12)0.0308 (11)0.0163 (11)0.0077 (10)0.0198 (10)
C90.087 (3)0.0501 (16)0.0516 (16)0.0393 (17)0.0195 (16)0.0298 (14)
C100.0501 (18)0.0689 (19)0.0498 (16)0.0046 (14)−0.0106 (13)0.0366 (15)
C110.068 (2)0.0642 (18)0.0426 (15)0.0200 (16)0.0189 (14)0.0346 (14)
C120.0338 (13)0.0360 (12)0.0445 (13)0.0173 (10)0.0172 (10)0.0259 (11)
C130.0462 (18)0.0477 (16)0.087 (2)0.0019 (13)0.0107 (16)0.0424 (17)
C140.108 (3)0.075 (2)0.0601 (19)0.055 (2)0.052 (2)0.0477 (18)
C150.0503 (17)0.0584 (17)0.0721 (19)0.0294 (14)0.0168 (15)0.0456 (16)
P1—O21.4761 (16)C8—C91.522 (4)
P1—N31.6301 (18)C8—C101.536 (4)
P1—N21.631 (2)C9—H9A0.9800
P1—N11.7142 (17)C9—H9B0.9800
F1—C11.351 (3)C9—H9C0.9800
F2—C51.353 (3)C10—H10A0.9800
O1—C71.226 (2)C10—H10B0.9800
N1—C71.352 (3)C10—H10C0.9800
N1—H1N0.858 (10)C11—H11A0.9800
N2—C81.495 (3)C11—H11B0.9800
N2—H2N0.860 (10)C11—H11C0.9800
N3—C121.485 (3)C12—C141.520 (4)
N3—H3N0.856 (10)C12—C151.526 (3)
C1—C21.381 (4)C12—C131.532 (4)
C1—C61.390 (4)C13—H13A0.9800
C2—C31.377 (5)C13—H13B0.9800
C2—H2A0.9500C13—H13C0.9800
C3—C41.381 (6)C14—H14A0.9800
C3—H3A0.9500C14—H14B0.9800
C4—C51.380 (4)C14—H14C0.9800
C4—H4A0.9500C15—H15A0.9800
C5—C61.381 (3)C15—H15B0.9800
C6—C71.509 (3)C15—H15C0.9800
C8—C111.517 (4)
O2—P1—N3116.57 (10)C8—C9—H9A109.5
O2—P1—N2115.98 (9)C8—C9—H9B109.5
N3—P1—N2102.21 (9)H9A—C9—H9B109.5
O2—P1—N1103.22 (8)C8—C9—H9C109.5
N3—P1—N1109.37 (9)H9A—C9—H9C109.5
N2—P1—N1109.43 (10)H9B—C9—H9C109.5
C7—N1—P1126.27 (14)C8—C10—H10A109.5
C7—N1—H1N113.8 (16)C8—C10—H10B109.5
P1—N1—H1N119.9 (16)H10A—C10—H10B109.5
C8—N2—P1127.01 (16)C8—C10—H10C109.5
C8—N2—H2N118.1 (19)H10A—C10—H10C109.5
P1—N2—H2N114.6 (19)H10B—C10—H10C109.5
C12—N3—P1128.21 (15)C8—C11—H11A109.5
C12—N3—H3N114.1 (19)C8—C11—H11B109.5
P1—N3—H3N114.8 (18)H11A—C11—H11B109.5
F1—C1—C2119.7 (3)C8—C11—H11C109.5
F1—C1—C6117.6 (2)H11A—C11—H11C109.5
C2—C1—C6122.7 (3)H11B—C11—H11C109.5
C3—C2—C1118.8 (3)N3—C12—C14111.4 (2)
C3—C2—H2A120.6N3—C12—C15106.2 (2)
C1—C2—H2A120.6C14—C12—C15110.4 (2)
C2—C3—C4120.9 (3)N3—C12—C13109.3 (2)
C2—C3—H3A119.5C14—C12—C13110.8 (3)
C4—C3—H3A119.5C15—C12—C13108.5 (2)
C3—C4—C5118.3 (3)C12—C13—H13A109.5
C3—C4—H4A120.9C12—C13—H13B109.5
C5—C4—H4A120.9H13A—C13—H13B109.5
F2—C5—C4118.7 (3)C12—C13—H13C109.5
F2—C5—C6117.9 (2)H13A—C13—H13C109.5
C4—C5—C6123.4 (3)H13B—C13—H13C109.5
C5—C6—C1116.0 (2)C12—C14—H14A109.5
C5—C6—C7123.1 (2)C12—C14—H14B109.5
C1—C6—C7120.9 (2)H14A—C14—H14B109.5
O1—C7—N1124.00 (18)C12—C14—H14C109.5
O1—C7—C6121.48 (18)H14A—C14—H14C109.5
N1—C7—C6114.52 (17)H14B—C14—H14C109.5
N2—C8—C11106.6 (2)C12—C15—H15A109.5
N2—C8—C9110.46 (19)C12—C15—H15B109.5
C11—C8—C9110.4 (2)H15A—C15—H15B109.5
N2—C8—C10109.0 (2)C12—C15—H15C109.5
C11—C8—C10109.5 (2)H15A—C15—H15C109.5
C9—C8—C10110.8 (2)H15B—C15—H15C109.5
O2—P1—N1—C7169.82 (18)C4—C5—C6—C7178.0 (2)
N3—P1—N1—C745.1 (2)F1—C1—C6—C5−180.0 (2)
N2—P1—N1—C7−66.1 (2)C2—C1—C6—C5−0.3 (4)
O2—P1—N2—C838.0 (2)F1—C1—C6—C72.0 (3)
N3—P1—N2—C8165.93 (18)C2—C1—C6—C7−178.3 (2)
N1—P1—N2—C8−78.2 (2)P1—N1—C7—O13.1 (3)
O2—P1—N3—C12−33.9 (2)P1—N1—C7—C6−175.92 (16)
N2—P1—N3—C12−161.48 (19)C5—C6—C7—O1114.8 (3)
N1—P1—N3—C1282.6 (2)C1—C6—C7—O1−67.3 (3)
F1—C1—C2—C3−179.2 (3)C5—C6—C7—N1−66.1 (3)
C6—C1—C2—C31.1 (5)C1—C6—C7—N1111.8 (2)
C1—C2—C3—C4−1.8 (5)P1—N2—C8—C11179.62 (18)
C2—C3—C4—C51.5 (5)P1—N2—C8—C959.7 (3)
C3—C4—C5—F2−178.8 (3)P1—N2—C8—C10−62.3 (3)
C3—C4—C5—C6−0.6 (4)P1—N3—C12—C14−55.9 (3)
F2—C5—C6—C1178.2 (2)P1—N3—C12—C15−176.14 (19)
C4—C5—C6—C10.0 (4)P1—N3—C12—C1367.0 (3)
F2—C5—C6—C7−3.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.86 (1)1.96 (1)2.808 (2)172 (2)
N2—H2N···O1ii0.86 (1)2.22 (1)3.042 (2)160 (2)
N3—H3N···O1ii0.86 (1)2.22 (2)3.008 (2)152 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.86 (1)1.96 (1)2.808 (2)172 (2)
N2—H2N⋯O1ii0.86 (1)2.22 (1)3.042 (2)160 (2)
N3—H3N⋯O1ii0.86 (1)2.22 (2)3.008 (2)152 (2)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  4 in total

1.  N-(2-Chloro-2,2-difluoro-acet-yl)-N',N''-diisopropyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Anahid Saneei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-19

2.  N-(2,6-Difluoro-benzo-yl)-P,P-bis-(pyrrolidin-1-yl)phosphinic amide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

3.  N,N'-Dicyclo-hexyl-N''-(2,6-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22

4.  N,N'-Dibenzyl-N''-(2,4-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Samad Shoghpour; Laura Torre-Fernández; Santiago García-Granda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.