| Literature DB >> 21589456 |
Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.
Abstract
In the title compound, C(15)H(24)F(2)N(3)O(2)P, the phosphoryl and carbonyl groups adopt anti positions relative to each other. The P atom is in a tetra-hedral coordination environment and the environment of each N atom is essentially planar. In the crystal, adjacent mol-ecules are linked via N-H⋯O=P and N-H⋯O=C hydrogen bonds into an extended chain parallel to the a axis. The crystal studied was a non-merohedral twin with a minor twin component of 36.4 (1)%.Entities:
Year: 2010 PMID: 21589456 PMCID: PMC3011709 DOI: 10.1107/S1600536810045927
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H24F2N3O2P | |
| Triclinic, | |
| Mo | |
| Cell parameters from 2837 reflections | |
| θ = 2.2–27.9° | |
| α = 117.171 (4)° | µ = 0.18 mm−1 |
| β = 98.636 (4)° | |
| γ = 97.988 (3)° | Block, colorless |
| 0.30 × 0.25 × 0.20 mm |
| Bruker SMART X2S benchtop CCD area-detector diffractometer | 4225 independent reflections |
| Radiation source: micro focus sealed tube | 3525 reflections with |
| doubly curved silicon crystal | |
| φ and ω scans | θmax = 27.9°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 7847 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4225 reflections | (Δ/σ)max = 0.007 |
| 224 parameters | Δρmax = 0.35 e Å−3 |
| 3 restraints | Δρmin = −0.26 e Å−3 |
| Experimental. Data refinement indicated a twin system and program Cell_Now (Sheldrick, 2008)
was used to generate the two components of the twin (63.6 (1)/36.4 ratio). Data
was integrated using |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.18621 (6) | 0.39181 (6) | 0.41180 (6) | 0.02191 (14) | |
| F1 | 0.4134 (2) | 0.6847 (2) | 0.94162 (17) | 0.0611 (5) | |
| F2 | 0.23506 (19) | 0.89470 (17) | 0.66107 (18) | 0.0523 (4) | |
| O1 | 0.45094 (16) | 0.62402 (19) | 0.64132 (18) | 0.0363 (4) | |
| O2 | 0.03152 (16) | 0.32970 (16) | 0.36977 (17) | 0.0305 (4) | |
| N1 | 0.20980 (18) | 0.55903 (19) | 0.56848 (19) | 0.0241 (4) | |
| H1N | 0.1375 (17) | 0.592 (3) | 0.595 (3) | 0.029* | |
| N2 | 0.2528 (2) | 0.4227 (2) | 0.29337 (19) | 0.0276 (4) | |
| H2N | 0.3378 (14) | 0.411 (3) | 0.293 (3) | 0.033* | |
| N3 | 0.28600 (19) | 0.2910 (2) | 0.4441 (2) | 0.0260 (4) | |
| H3N | 0.3739 (13) | 0.318 (3) | 0.449 (3) | 0.031* | |
| C1 | 0.3611 (3) | 0.7959 (3) | 0.9332 (3) | 0.0404 (6) | |
| C2 | 0.3480 (4) | 0.9159 (4) | 1.0587 (3) | 0.0597 (9) | |
| H2A | 0.3767 | 0.9216 | 1.1511 | 0.072* | |
| C3 | 0.2927 (4) | 1.0271 (4) | 1.0475 (4) | 0.0675 (10) | |
| H3A | 0.2807 | 1.1087 | 1.1327 | 0.081* | |
| C4 | 0.2544 (3) | 1.0216 (3) | 0.9142 (4) | 0.0593 (9) | |
| H4A | 0.2183 | 1.0995 | 0.9069 | 0.071* | |
| C5 | 0.2699 (3) | 0.8998 (3) | 0.7919 (3) | 0.0386 (6) | |
| C6 | 0.3228 (2) | 0.7840 (2) | 0.7961 (2) | 0.0283 (5) | |
| C7 | 0.3352 (2) | 0.6488 (2) | 0.6613 (2) | 0.0243 (4) | |
| C8 | 0.1874 (3) | 0.4811 (3) | 0.1991 (2) | 0.0353 (5) | |
| C9 | 0.1621 (4) | 0.6356 (3) | 0.2928 (3) | 0.0580 (9) | |
| H9A | 0.2518 | 0.7042 | 0.3598 | 0.087* | |
| H9B | 0.0940 | 0.6275 | 0.3491 | 0.087* | |
| H9C | 0.1241 | 0.6747 | 0.2297 | 0.087* | |
| C10 | 0.0477 (3) | 0.3691 (4) | 0.0967 (3) | 0.0569 (8) | |
| H10A | −0.0227 | 0.3709 | 0.1536 | 0.085* | |
| H10B | 0.0640 | 0.2677 | 0.0478 | 0.085* | |
| H10C | 0.0126 | 0.3972 | 0.0234 | 0.085* | |
| C11 | 0.2913 (4) | 0.4907 (4) | 0.1095 (3) | 0.0535 (7) | |
| H11A | 0.3809 | 0.5611 | 0.1750 | 0.080* | |
| H11B | 0.2515 | 0.5263 | 0.0439 | 0.080* | |
| H11C | 0.3084 | 0.3911 | 0.0518 | 0.080* | |
| C12 | 0.2566 (3) | 0.1929 (3) | 0.5095 (3) | 0.0336 (5) | |
| C13 | 0.1325 (3) | 0.0588 (3) | 0.4049 (4) | 0.0579 (8) | |
| H13A | 0.1533 | 0.0073 | 0.3088 | 0.087* | |
| H13B | 0.0460 | 0.0945 | 0.3956 | 0.087* | |
| H13C | 0.1188 | −0.0112 | 0.4433 | 0.087* | |
| C14 | 0.2251 (5) | 0.2791 (4) | 0.6581 (4) | 0.0677 (10) | |
| H14A | 0.3057 | 0.3642 | 0.7232 | 0.102* | |
| H14B | 0.2093 | 0.2123 | 0.6997 | 0.102* | |
| H14C | 0.1400 | 0.3165 | 0.6470 | 0.102* | |
| C15 | 0.3893 (3) | 0.1343 (4) | 0.5243 (4) | 0.0525 (7) | |
| H15A | 0.4090 | 0.0802 | 0.4280 | 0.079* | |
| H15B | 0.3742 | 0.0661 | 0.5645 | 0.079* | |
| H15C | 0.4701 | 0.2191 | 0.5898 | 0.079* |
| P1 | 0.0176 (2) | 0.0218 (2) | 0.0242 (3) | 0.00825 (19) | 0.00585 (19) | 0.0082 (2) |
| F1 | 0.0786 (14) | 0.0696 (11) | 0.0426 (9) | 0.0253 (10) | 0.0115 (8) | 0.0322 (9) |
| F2 | 0.0626 (11) | 0.0417 (8) | 0.0565 (10) | 0.0198 (8) | 0.0103 (8) | 0.0264 (8) |
| O1 | 0.0199 (7) | 0.0431 (9) | 0.0381 (9) | 0.0093 (7) | 0.0107 (7) | 0.0117 (7) |
| O2 | 0.0185 (7) | 0.0288 (7) | 0.0359 (8) | 0.0083 (6) | 0.0062 (6) | 0.0083 (7) |
| N1 | 0.0179 (8) | 0.0251 (8) | 0.0258 (8) | 0.0100 (7) | 0.0080 (7) | 0.0073 (7) |
| N2 | 0.0238 (9) | 0.0369 (10) | 0.0278 (9) | 0.0147 (8) | 0.0093 (8) | 0.0174 (8) |
| N3 | 0.0190 (9) | 0.0280 (9) | 0.0367 (10) | 0.0111 (7) | 0.0116 (8) | 0.0173 (8) |
| C1 | 0.0370 (14) | 0.0419 (13) | 0.0338 (12) | 0.0027 (11) | 0.0089 (10) | 0.0131 (11) |
| C2 | 0.0572 (19) | 0.067 (2) | 0.0259 (13) | 0.0018 (16) | 0.0120 (12) | 0.0022 (13) |
| C3 | 0.061 (2) | 0.0446 (17) | 0.0517 (18) | 0.0063 (15) | 0.0210 (16) | −0.0140 (14) |
| C4 | 0.0560 (19) | 0.0317 (13) | 0.067 (2) | 0.0160 (13) | 0.0164 (16) | 0.0030 (14) |
| C5 | 0.0337 (13) | 0.0274 (11) | 0.0418 (13) | 0.0036 (10) | 0.0092 (11) | 0.0072 (10) |
| C6 | 0.0205 (9) | 0.0265 (10) | 0.0276 (10) | 0.0022 (8) | 0.0075 (8) | 0.0052 (8) |
| C7 | 0.0210 (10) | 0.0264 (10) | 0.0252 (10) | 0.0067 (8) | 0.0083 (8) | 0.0112 (8) |
| C8 | 0.0437 (14) | 0.0373 (12) | 0.0308 (11) | 0.0163 (11) | 0.0077 (10) | 0.0198 (10) |
| C9 | 0.087 (3) | 0.0501 (16) | 0.0516 (16) | 0.0393 (17) | 0.0195 (16) | 0.0298 (14) |
| C10 | 0.0501 (18) | 0.0689 (19) | 0.0498 (16) | 0.0046 (14) | −0.0106 (13) | 0.0366 (15) |
| C11 | 0.068 (2) | 0.0642 (18) | 0.0426 (15) | 0.0200 (16) | 0.0189 (14) | 0.0346 (14) |
| C12 | 0.0338 (13) | 0.0360 (12) | 0.0445 (13) | 0.0173 (10) | 0.0172 (10) | 0.0259 (11) |
| C13 | 0.0462 (18) | 0.0477 (16) | 0.087 (2) | 0.0019 (13) | 0.0107 (16) | 0.0424 (17) |
| C14 | 0.108 (3) | 0.075 (2) | 0.0601 (19) | 0.055 (2) | 0.052 (2) | 0.0477 (18) |
| C15 | 0.0503 (17) | 0.0584 (17) | 0.0721 (19) | 0.0294 (14) | 0.0168 (15) | 0.0456 (16) |
| P1—O2 | 1.4761 (16) | C8—C9 | 1.522 (4) |
| P1—N3 | 1.6301 (18) | C8—C10 | 1.536 (4) |
| P1—N2 | 1.631 (2) | C9—H9A | 0.9800 |
| P1—N1 | 1.7142 (17) | C9—H9B | 0.9800 |
| F1—C1 | 1.351 (3) | C9—H9C | 0.9800 |
| F2—C5 | 1.353 (3) | C10—H10A | 0.9800 |
| O1—C7 | 1.226 (2) | C10—H10B | 0.9800 |
| N1—C7 | 1.352 (3) | C10—H10C | 0.9800 |
| N1—H1N | 0.858 (10) | C11—H11A | 0.9800 |
| N2—C8 | 1.495 (3) | C11—H11B | 0.9800 |
| N2—H2N | 0.860 (10) | C11—H11C | 0.9800 |
| N3—C12 | 1.485 (3) | C12—C14 | 1.520 (4) |
| N3—H3N | 0.856 (10) | C12—C15 | 1.526 (3) |
| C1—C2 | 1.381 (4) | C12—C13 | 1.532 (4) |
| C1—C6 | 1.390 (4) | C13—H13A | 0.9800 |
| C2—C3 | 1.377 (5) | C13—H13B | 0.9800 |
| C2—H2A | 0.9500 | C13—H13C | 0.9800 |
| C3—C4 | 1.381 (6) | C14—H14A | 0.9800 |
| C3—H3A | 0.9500 | C14—H14B | 0.9800 |
| C4—C5 | 1.380 (4) | C14—H14C | 0.9800 |
| C4—H4A | 0.9500 | C15—H15A | 0.9800 |
| C5—C6 | 1.381 (3) | C15—H15B | 0.9800 |
| C6—C7 | 1.509 (3) | C15—H15C | 0.9800 |
| C8—C11 | 1.517 (4) | ||
| O2—P1—N3 | 116.57 (10) | C8—C9—H9A | 109.5 |
| O2—P1—N2 | 115.98 (9) | C8—C9—H9B | 109.5 |
| N3—P1—N2 | 102.21 (9) | H9A—C9—H9B | 109.5 |
| O2—P1—N1 | 103.22 (8) | C8—C9—H9C | 109.5 |
| N3—P1—N1 | 109.37 (9) | H9A—C9—H9C | 109.5 |
| N2—P1—N1 | 109.43 (10) | H9B—C9—H9C | 109.5 |
| C7—N1—P1 | 126.27 (14) | C8—C10—H10A | 109.5 |
| C7—N1—H1N | 113.8 (16) | C8—C10—H10B | 109.5 |
| P1—N1—H1N | 119.9 (16) | H10A—C10—H10B | 109.5 |
| C8—N2—P1 | 127.01 (16) | C8—C10—H10C | 109.5 |
| C8—N2—H2N | 118.1 (19) | H10A—C10—H10C | 109.5 |
| P1—N2—H2N | 114.6 (19) | H10B—C10—H10C | 109.5 |
| C12—N3—P1 | 128.21 (15) | C8—C11—H11A | 109.5 |
| C12—N3—H3N | 114.1 (19) | C8—C11—H11B | 109.5 |
| P1—N3—H3N | 114.8 (18) | H11A—C11—H11B | 109.5 |
| F1—C1—C2 | 119.7 (3) | C8—C11—H11C | 109.5 |
| F1—C1—C6 | 117.6 (2) | H11A—C11—H11C | 109.5 |
| C2—C1—C6 | 122.7 (3) | H11B—C11—H11C | 109.5 |
| C3—C2—C1 | 118.8 (3) | N3—C12—C14 | 111.4 (2) |
| C3—C2—H2A | 120.6 | N3—C12—C15 | 106.2 (2) |
| C1—C2—H2A | 120.6 | C14—C12—C15 | 110.4 (2) |
| C2—C3—C4 | 120.9 (3) | N3—C12—C13 | 109.3 (2) |
| C2—C3—H3A | 119.5 | C14—C12—C13 | 110.8 (3) |
| C4—C3—H3A | 119.5 | C15—C12—C13 | 108.5 (2) |
| C3—C4—C5 | 118.3 (3) | C12—C13—H13A | 109.5 |
| C3—C4—H4A | 120.9 | C12—C13—H13B | 109.5 |
| C5—C4—H4A | 120.9 | H13A—C13—H13B | 109.5 |
| F2—C5—C4 | 118.7 (3) | C12—C13—H13C | 109.5 |
| F2—C5—C6 | 117.9 (2) | H13A—C13—H13C | 109.5 |
| C4—C5—C6 | 123.4 (3) | H13B—C13—H13C | 109.5 |
| C5—C6—C1 | 116.0 (2) | C12—C14—H14A | 109.5 |
| C5—C6—C7 | 123.1 (2) | C12—C14—H14B | 109.5 |
| C1—C6—C7 | 120.9 (2) | H14A—C14—H14B | 109.5 |
| O1—C7—N1 | 124.00 (18) | C12—C14—H14C | 109.5 |
| O1—C7—C6 | 121.48 (18) | H14A—C14—H14C | 109.5 |
| N1—C7—C6 | 114.52 (17) | H14B—C14—H14C | 109.5 |
| N2—C8—C11 | 106.6 (2) | C12—C15—H15A | 109.5 |
| N2—C8—C9 | 110.46 (19) | C12—C15—H15B | 109.5 |
| C11—C8—C9 | 110.4 (2) | H15A—C15—H15B | 109.5 |
| N2—C8—C10 | 109.0 (2) | C12—C15—H15C | 109.5 |
| C11—C8—C10 | 109.5 (2) | H15A—C15—H15C | 109.5 |
| C9—C8—C10 | 110.8 (2) | H15B—C15—H15C | 109.5 |
| O2—P1—N1—C7 | 169.82 (18) | C4—C5—C6—C7 | 178.0 (2) |
| N3—P1—N1—C7 | 45.1 (2) | F1—C1—C6—C5 | −180.0 (2) |
| N2—P1—N1—C7 | −66.1 (2) | C2—C1—C6—C5 | −0.3 (4) |
| O2—P1—N2—C8 | 38.0 (2) | F1—C1—C6—C7 | 2.0 (3) |
| N3—P1—N2—C8 | 165.93 (18) | C2—C1—C6—C7 | −178.3 (2) |
| N1—P1—N2—C8 | −78.2 (2) | P1—N1—C7—O1 | 3.1 (3) |
| O2—P1—N3—C12 | −33.9 (2) | P1—N1—C7—C6 | −175.92 (16) |
| N2—P1—N3—C12 | −161.48 (19) | C5—C6—C7—O1 | 114.8 (3) |
| N1—P1—N3—C12 | 82.6 (2) | C1—C6—C7—O1 | −67.3 (3) |
| F1—C1—C2—C3 | −179.2 (3) | C5—C6—C7—N1 | −66.1 (3) |
| C6—C1—C2—C3 | 1.1 (5) | C1—C6—C7—N1 | 111.8 (2) |
| C1—C2—C3—C4 | −1.8 (5) | P1—N2—C8—C11 | 179.62 (18) |
| C2—C3—C4—C5 | 1.5 (5) | P1—N2—C8—C9 | 59.7 (3) |
| C3—C4—C5—F2 | −178.8 (3) | P1—N2—C8—C10 | −62.3 (3) |
| C3—C4—C5—C6 | −0.6 (4) | P1—N3—C12—C14 | −55.9 (3) |
| F2—C5—C6—C1 | 178.2 (2) | P1—N3—C12—C15 | −176.14 (19) |
| C4—C5—C6—C1 | 0.0 (4) | P1—N3—C12—C13 | 67.0 (3) |
| F2—C5—C6—C7 | −3.8 (3) |
| H··· | ||||
| N1—H1N···O2i | 0.86 (1) | 1.96 (1) | 2.808 (2) | 172 (2) |
| N2—H2N···O1ii | 0.86 (1) | 2.22 (1) | 3.042 (2) | 160 (2) |
| N3—H3N···O1ii | 0.86 (1) | 2.22 (2) | 3.008 (2) | 152 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 (1) | 1.96 (1) | 2.808 (2) | 172 (2) |
| N2—H2 | 0.86 (1) | 2.22 (1) | 3.042 (2) | 160 (2) |
| N3—H3 | 0.86 (1) | 2.22 (2) | 3.008 (2) | 152 (2) |
Symmetry codes: (i) ; (ii) .