Literature DB >> 22346913

N,N'-Dibenzyl-N''-(2,4-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Mehrdad Pourayoubi, Samad Shoghpour, Laura Torre-Fernández, Santiago García-Granda.   

Abstract

In the title mol-ecule, C(23)H(24)F(2)N(3)O(2)P, the P atom is in a distorted tetra-hedral P(=O)(N)(N)(2) environment, with the bond angles around the P atom in the range 106.78 (11)-114.10 (13)°. The phosphoryl and carbonyl groups, which are separated by an N atom, adopt an anti orientation relative to each other. In the C(=O)NHP(=O) fragment, the P-N bond is longer [1.683 (2) Å] and the O-P-N angle is smaller [106.78 (11)°] than the other P-N bonds [1.613 (2) and 1.632 (2) Å] and O-P-N bond angles [114.10 (13) and 110.83 (12)°], respectively. The N atoms have sp(2) character. In the crystal, pairs of P=O⋯H-N hydrogen bonds form inversion dimers with R(2) (2)(8) ring motifs.

Entities:  

Year:  2012        PMID: 22346913      PMCID: PMC3274968          DOI: 10.1107/S1600536811055115

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond patterns in compounds with formula RC(O)NHP(O)[NR 1 R 2]2 and RC(O)NHP(O)[NHR 1]2 and for the discussion of different C(=O) versus P(=O) orientations in the C(O)NHP(O) fragment, see: Toghraee et al. (2011 ▶). For hydrogen-bond strengths in cyclic hydrogen-bond motifs and for bond lengths and angles, see: Pourayoubi et al. (2011 ▶). For graph-set analysis of hydrogen-bonds motifs, see: Bernstein et al. (1995 ▶). For the synthesis of the starting phospho­rous–chlorine compound, see: Pourayoubi et al. (2010 ▶).

Experimental

Crystal data

C23H24F2N3O2P M = 443.42 Triclinic, a = 10.3619 (6) Å b = 10.7721 (10) Å c = 11.6433 (8) Å α = 70.523 (7)° β = 72.495 (5)° γ = 70.197 (7)° V = 1126.65 (15) Å3 Z = 2 Cu Kα radiation μ = 1.44 mm−1 T = 300 K 0.17 × 0.14 × 0.03 mm

Data collection

Agilent Xcalibur Gemini R diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.954, T max = 1.000 10022 measured reflections 4209 independent reflections 2758 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.141 S = 1.01 4209 reflections 268 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811055115/fy2035sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055115/fy2035Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H24F2N3O2PZ = 2
Mr = 443.42F(000) = 464
Triclinic, P1Dx = 1.307 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 10.3619 (6) ÅCell parameters from 2755 reflections
b = 10.7721 (10) Åθ = 4.1–70.6°
c = 11.6433 (8) ŵ = 1.44 mm1
α = 70.523 (7)°T = 300 K
β = 72.495 (5)°Plate, colorless
γ = 70.197 (7)°0.17 × 0.14 × 0.03 mm
V = 1126.65 (15) Å3
Agilent Xcalibur Gemini R diffractometer4209 independent reflections
Radiation source: Enhance (Cu) X-ray Source2758 reflections with I > 2σ(I)
graphiteRint = 0.044
Detector resolution: 10.2673 pixels mm-1θmax = 70.7°, θmin = 4.1°
ω scansh = −8→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→13
Tmin = 0.954, Tmax = 1.000l = −14→14
10022 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0585P)2] where P = (Fo2 + 2Fc2)/3
4209 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.58022 (6)0.27216 (7)0.57829 (7)0.0460 (2)
N20.4103 (2)0.3411 (2)0.5698 (2)0.0484 (5)
H20.38660.42550.52970.058*
N30.6579 (2)0.1967 (3)0.4676 (2)0.0586 (6)
N40.5904 (2)0.1570 (2)0.7108 (2)0.0528 (6)
O50.63610 (18)0.38484 (19)0.5704 (2)0.0595 (5)
O60.3324 (2)0.1512 (2)0.6516 (2)0.0684 (6)
F70.0748 (2)0.2082 (2)0.5985 (2)0.0946 (7)
F8−0.24562 (18)0.6018 (2)0.6907 (2)0.0991 (7)
C90.1600 (3)0.3630 (3)0.6399 (3)0.0503 (7)
C100.1264 (3)0.4859 (3)0.6711 (3)0.0594 (7)
H100.19770.51440.67920.071*
C11−0.0098 (3)0.5667 (4)0.6902 (3)0.0681 (6)
H11−0.03150.64840.71150.082*
C12−0.1121 (3)0.5211 (4)0.6763 (3)0.0681 (6)
C13−0.0871 (3)0.4028 (3)0.6477 (3)0.0604 (5)
H13−0.15920.37490.64000.072*
C140.0492 (3)0.3252 (3)0.6305 (3)0.0604 (5)
C150.6261 (3)0.2312 (3)0.2566 (3)0.0548 (7)
C160.5939 (3)0.3719 (3)0.2161 (3)0.0689 (9)
H160.55050.42380.27390.083*
C170.6249 (4)0.4357 (4)0.0925 (4)0.0835 (11)
H170.60240.53050.06660.100*
C180.6890 (4)0.3607 (5)0.0060 (4)0.0868 (12)
H180.70970.4047−0.07830.104*
C190.7225 (3)0.2209 (4)0.0442 (3)0.0767 (10)
H190.76630.1699−0.01420.092*
C200.6910 (3)0.1556 (3)0.1697 (3)0.0586 (7)
H200.71350.06070.19540.070*
C210.7259 (3)−0.0736 (3)0.8050 (3)0.0553 (7)
C220.7176 (3)−0.2009 (3)0.8816 (3)0.0663 (8)
H220.6435−0.23390.88620.080*
C230.8165 (4)−0.2796 (4)0.9508 (4)0.0905 (12)
H230.8101−0.36581.00100.109*
C240.9252 (4)−0.2314 (5)0.9463 (4)0.1019 (14)
H240.9920−0.28430.99400.122*
C250.9347 (4)−0.1054 (5)0.8716 (4)0.0970 (13)
H251.0080−0.07230.86900.116*
C260.8370 (3)−0.0268 (4)0.8002 (4)0.0770 (10)
H260.84560.05820.74840.092*
C270.3063 (3)0.2749 (3)0.6210 (3)0.0512 (7)
C280.5913 (3)0.1608 (3)0.3930 (3)0.0622 (8)
H28A0.49030.18590.42290.075*
H28B0.62200.06270.40370.075*
C290.6160 (3)0.0108 (3)0.7288 (3)0.0600 (8)
H29A0.6461−0.00920.64810.072*
H29B0.5289−0.01480.77040.072*
C300.8121 (3)0.1484 (4)0.4424 (4)0.0864 (12)
H30A0.84730.17660.49430.130*
H30B0.84940.18650.35630.130*
H30C0.84010.05050.46000.130*
C310.5236 (4)0.2029 (4)0.8241 (3)0.0922 (13)
H31A0.51100.29960.80520.138*
H31B0.58190.15640.88420.138*
H31C0.43400.18310.85750.138*
U11U22U33U12U13U23
P10.0399 (3)0.0435 (4)0.0562 (4)−0.0113 (3)−0.0114 (3)−0.0136 (3)
N20.0407 (10)0.0409 (12)0.0630 (15)−0.0116 (9)−0.0131 (10)−0.0100 (10)
N30.0524 (12)0.0660 (16)0.0568 (15)−0.0061 (11)−0.0139 (11)−0.0230 (12)
N40.0536 (12)0.0533 (14)0.0517 (14)−0.0087 (10)−0.0142 (11)−0.0167 (11)
O50.0465 (9)0.0476 (11)0.0894 (15)−0.0148 (8)−0.0206 (10)−0.0161 (10)
O60.0572 (11)0.0446 (12)0.1014 (18)−0.0157 (9)−0.0223 (11)−0.0092 (11)
F70.0756 (12)0.0788 (14)0.150 (2)−0.0270 (10)−0.0354 (13)−0.0388 (14)
F80.0412 (9)0.1202 (18)0.1219 (19)−0.0012 (10)−0.0078 (10)−0.0427 (15)
C90.0430 (13)0.0523 (16)0.0551 (17)−0.0172 (12)−0.0112 (12)−0.0079 (13)
C100.0503 (15)0.0680 (19)0.065 (2)−0.0196 (14)−0.0077 (13)−0.0238 (16)
C110.0461 (10)0.0789 (16)0.0738 (16)−0.0124 (10)−0.0027 (10)−0.0261 (13)
C120.0461 (10)0.0789 (16)0.0738 (16)−0.0124 (10)−0.0027 (10)−0.0261 (13)
C130.0479 (9)0.0677 (13)0.0672 (14)−0.0239 (9)−0.0129 (9)−0.0101 (11)
C140.0479 (9)0.0677 (13)0.0672 (14)−0.0239 (9)−0.0129 (9)−0.0101 (11)
C150.0556 (15)0.0624 (18)0.0538 (18)−0.0246 (13)−0.0113 (13)−0.0154 (14)
C160.076 (2)0.063 (2)0.067 (2)−0.0164 (16)−0.0143 (17)−0.0183 (17)
C170.088 (2)0.077 (2)0.070 (2)−0.018 (2)−0.022 (2)0.002 (2)
C180.081 (2)0.110 (3)0.056 (2)−0.025 (2)−0.0169 (18)−0.002 (2)
C190.0647 (19)0.109 (3)0.062 (2)−0.0185 (19)−0.0110 (16)−0.036 (2)
C200.0537 (15)0.071 (2)0.0576 (19)−0.0199 (14)−0.0103 (14)−0.0230 (16)
C210.0517 (15)0.0591 (17)0.0504 (17)−0.0104 (13)−0.0117 (13)−0.0117 (14)
C220.0624 (17)0.0610 (19)0.064 (2)−0.0105 (15)−0.0121 (15)−0.0088 (16)
C230.085 (3)0.079 (3)0.079 (3)−0.004 (2)−0.024 (2)0.003 (2)
C240.072 (2)0.113 (4)0.095 (3)0.013 (2)−0.038 (2)−0.014 (3)
C250.0576 (19)0.119 (4)0.112 (3)−0.012 (2)−0.036 (2)−0.022 (3)
C260.0608 (18)0.082 (2)0.084 (3)−0.0206 (17)−0.0262 (17)−0.005 (2)
C270.0479 (14)0.0464 (16)0.0629 (18)−0.0154 (12)−0.0173 (13)−0.0107 (13)
C280.0791 (19)0.0574 (18)0.0570 (19)−0.0301 (15)−0.0025 (15)−0.0216 (15)
C290.0641 (17)0.0502 (17)0.068 (2)−0.0211 (14)−0.0254 (15)−0.0026 (15)
C300.0557 (18)0.109 (3)0.083 (3)0.0049 (18)−0.0099 (17)−0.042 (2)
C310.098 (3)0.105 (3)0.059 (2)0.006 (2)−0.019 (2)−0.034 (2)
P1—O51.4787 (19)C17—H170.9300
P1—N31.613 (2)C18—C191.371 (5)
P1—N41.632 (2)C18—H180.9300
P1—N21.683 (2)C19—C201.386 (5)
N2—C271.370 (3)C19—H190.9300
N2—H20.8600C20—H200.9300
N3—C281.465 (4)C21—C221.379 (4)
N3—C301.472 (4)C21—C261.385 (4)
N4—C311.455 (4)C21—C291.510 (4)
N4—C291.458 (4)C22—C231.367 (5)
O6—C271.213 (3)C22—H220.9300
F7—C141.351 (4)C23—C241.372 (6)
F8—C121.357 (3)C23—H230.9300
C9—C141.385 (4)C24—C251.364 (6)
C9—C101.392 (4)C24—H240.9300
C9—C271.487 (4)C25—C261.375 (5)
C10—C111.381 (4)C25—H250.9300
C10—H100.9300C26—H260.9300
C11—C121.379 (5)C28—H28A0.9700
C11—H110.9300C28—H28B0.9700
C12—C131.345 (4)C29—H29A0.9700
C13—C141.370 (4)C29—H29B0.9700
C13—H130.9300C30—H30A0.9600
C15—C161.381 (4)C30—H30B0.9600
C15—C201.382 (4)C30—H30C0.9600
C15—C281.504 (4)C31—H31A0.9600
C16—C171.363 (5)C31—H31B0.9600
C16—H160.9300C31—H31C0.9600
C17—C181.373 (6)
O5—P1—N3114.10 (13)C15—C20—C19120.1 (3)
O5—P1—N4110.83 (12)C15—C20—H20120.0
N3—P1—N4108.04 (13)C19—C20—H20120.0
O5—P1—N2106.78 (11)C22—C21—C26118.3 (3)
N3—P1—N2108.02 (12)C22—C21—C29120.1 (3)
N4—P1—N2108.93 (12)C26—C21—C29121.7 (3)
C27—N2—P1125.86 (19)C23—C22—C21121.1 (3)
C27—N2—H2117.1C23—C22—H22119.4
P1—N2—H2117.1C21—C22—H22119.4
C28—N3—C30114.7 (2)C22—C23—C24120.1 (4)
C28—N3—P1127.0 (2)C22—C23—H23120.0
C30—N3—P1118.1 (2)C24—C23—H23120.0
C31—N4—C29114.2 (3)C25—C24—C23119.7 (4)
C31—N4—P1117.2 (2)C25—C24—H24120.2
C29—N4—P1125.2 (2)C23—C24—H24120.2
C14—C9—C10116.4 (3)C24—C25—C26120.5 (4)
C14—C9—C27121.6 (3)C24—C25—H25119.7
C10—C9—C27122.0 (2)C26—C25—H25119.7
C11—C10—C9121.9 (3)C25—C26—C21120.4 (4)
C11—C10—H10119.1C25—C26—H26119.8
C9—C10—H10119.1C21—C26—H26119.8
C12—C11—C10117.2 (3)O6—C27—N2121.8 (2)
C12—C11—H11121.4O6—C27—C9122.0 (2)
C10—C11—H11121.4N2—C27—C9116.2 (2)
C13—C12—F8118.3 (3)N3—C28—C15112.2 (2)
C13—C12—C11124.0 (3)N3—C28—H28A109.2
F8—C12—C11117.7 (3)C15—C28—H28A109.2
C12—C13—C14117.0 (3)N3—C28—H28B109.2
C12—C13—H13121.5C15—C28—H28B109.2
C14—C13—H13121.5H28A—C28—H28B107.9
F7—C14—C13117.0 (3)N4—C29—C21112.5 (2)
F7—C14—C9119.4 (3)N4—C29—H29A109.1
C13—C14—C9123.6 (3)C21—C29—H29A109.1
C16—C15—C20118.9 (3)N4—C29—H29B109.1
C16—C15—C28120.8 (3)C21—C29—H29B109.1
C20—C15—C28120.3 (3)H29A—C29—H29B107.8
C17—C16—C15120.8 (3)N3—C30—H30A109.5
C17—C16—H16119.6N3—C30—H30B109.5
C15—C16—H16119.6H30A—C30—H30B109.5
C16—C17—C18120.4 (4)N3—C30—H30C109.5
C16—C17—H17119.8H30A—C30—H30C109.5
C18—C17—H17119.8H30B—C30—H30C109.5
C19—C18—C17119.8 (4)N4—C31—H31A109.5
C19—C18—H18120.1N4—C31—H31B109.5
C17—C18—H18120.1H31A—C31—H31B109.5
C18—C19—C20120.0 (3)N4—C31—H31C109.5
C18—C19—H19120.0H31A—C31—H31C109.5
C20—C19—H19120.0H31B—C31—H31C109.5
O5—P1—N2—C27−152.1 (2)C28—C15—C16—C17−179.7 (3)
N3—P1—N2—C2784.8 (3)C15—C16—C17—C18−0.1 (6)
N4—P1—N2—C27−32.3 (3)C16—C17—C18—C19−0.2 (6)
O5—P1—N3—C28−133.5 (2)C17—C18—C19—C200.3 (6)
N4—P1—N3—C28102.7 (3)C16—C15—C20—C19−0.1 (4)
N2—P1—N3—C28−15.0 (3)C28—C15—C20—C19179.8 (3)
O5—P1—N3—C3051.3 (3)C18—C19—C20—C15−0.2 (5)
N4—P1—N3—C30−72.4 (3)C26—C21—C22—C23−0.2 (5)
N2—P1—N3—C30169.9 (2)C29—C21—C22—C23179.6 (3)
O5—P1—N4—C3155.7 (3)C21—C22—C23—C241.0 (6)
N3—P1—N4—C31−178.6 (2)C22—C23—C24—C25−0.7 (7)
N2—P1—N4—C31−61.5 (3)C23—C24—C25—C26−0.5 (7)
O5—P1—N4—C29−146.5 (2)C24—C25—C26—C211.2 (6)
N3—P1—N4—C29−20.8 (3)C22—C21—C26—C25−0.9 (5)
N2—P1—N4—C2996.3 (2)C29—C21—C26—C25179.3 (3)
C14—C9—C10—C11−0.7 (5)P1—N2—C27—O6−18.5 (4)
C27—C9—C10—C11−179.1 (3)P1—N2—C27—C9159.9 (2)
C9—C10—C11—C12−0.4 (5)C14—C9—C27—O6−34.0 (5)
C10—C11—C12—C131.2 (6)C10—C9—C27—O6144.4 (3)
C10—C11—C12—F8−177.8 (3)C14—C9—C27—N2147.6 (3)
F8—C12—C13—C14178.3 (3)C10—C9—C27—N2−34.1 (4)
C11—C12—C13—C14−0.7 (5)C30—N3—C28—C15−66.2 (4)
C12—C13—C14—F7−178.3 (3)P1—N3—C28—C15118.5 (3)
C12—C13—C14—C9−0.6 (5)C16—C15—C28—N3−58.5 (4)
C10—C9—C14—F7178.9 (3)C20—C15—C28—N3121.6 (3)
C27—C9—C14—F7−2.7 (5)C31—N4—C29—C21−68.0 (3)
C10—C9—C14—C131.2 (5)P1—N4—C29—C21133.6 (2)
C27—C9—C14—C13179.7 (3)C22—C21—C29—N4148.0 (3)
C20—C15—C16—C170.2 (5)C26—C21—C29—N4−32.2 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O5i0.861.962.812 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O5i0.861.962.812 (3)171

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Anahid Saneei; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

3.  N,N'-Di-tert-butyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  3 in total
  1 in total

1.  Bis(pyrrolidin-1-yl)phosphinic (2,4-di-fluoro-benzo-yl)amide.

Authors:  Mojtaba Keikha; Mehrdad Pourayoubi; Jerry P Jasinski; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11
  1 in total

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