Literature DB >> 21522415

N-(2-Chloro-2,2-difluoro-acet-yl)-N',N''-diisopropyl-phospho-ric triamide.

Mehrdad Pourayoubi1, Anahid Saneei.   

Abstract

In the title compound, C(8)H(17)ClF(2)N(3)O(2)P, the phosphoryl group and the NH unit of the C(O)NHP(O) moiety adopt a syn conformation with respect to each other. The P atom is in a tetra-hedral coordination environment and the environment of the N atom of the C(O)NHP(O) moiety is essentially planar. In the crystal, adjacent mol-ecules are linked via N-H⋯O =P and N-H⋯O =C hydrogen bonds, building R(2) (2)(8) and R(2) (2)(12) rings in a linear arrangement parallel to [110].

Entities:  

Year:  2011        PMID: 21522415      PMCID: PMC3052045          DOI: 10.1107/S1600536811005435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes of phosphoryl donor ligands, see: Gholivand et al. (2010 ▶). For a phospho­ric triamide compound having a C(=O)NHP(=O) skeleton, see: Pourayoubi et al. (2010 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For the synthesis of the starting material, CClF2C(O)NHP(O)Cl2, see: Iriarte et al. (2008 ▶).

Experimental

Crystal data

n class="Chemical">C8H17ClF2N3O2P M = 291.67 Triclinic, a = 8.1993 (7) Å b = 9.6735 (9) Å c = 9.8331 (9) Å α = 99.784 (2)° β = 105.999 (2)° γ = 110.770 (2)° V = 669.18 (10) Å3 Z = 2 Mo Kα radiation μ = 0.42 mm−1 T = 100 K 0.26 × 0.19 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.602, T max = 0.750 9089 measured reflections 4218 independent reflections 3337 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.095 S = 1.04 4218 reflections 158 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.30 e Å−3 Data collection: n class="Gene">APEX2 (Bruker, 2005 ▶); cell refinpan>emenpan>t: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refinpan>e structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005435/dn2655sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005435/dn2655Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H17ClF2N3O2PZ = 2
Mr = 291.67F(000) = 304
Triclinic, P1Dx = 1.448 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1993 (7) ÅCell parameters from 2867 reflections
b = 9.6735 (9) Åθ = 2.3–30.9°
c = 9.8331 (9) ŵ = 0.42 mm1
α = 99.784 (2)°T = 100 K
β = 105.999 (2)°Prizm, colorless
γ = 110.770 (2)°0.26 × 0.19 × 0.16 mm
V = 669.18 (10) Å3
Bruker SMART APEXII CCD area-detector diffractometer4218 independent reflections
Radiation source: fine-focus sealed tube3337 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 31.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→11
Tmin = 0.602, Tmax = 0.750k = −14→14
9089 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0527P)2 + 0.0127P] where P = (Fo2 + 2Fc2)/3
4218 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.23257 (4)0.86972 (4)0.03714 (4)0.01390 (8)
Cl10.30477 (6)0.56630 (4)−0.36890 (4)0.03081 (10)
F10.54717 (11)0.63181 (10)−0.11562 (10)0.0284 (2)
F20.31465 (14)0.40675 (9)−0.19141 (11)0.0322 (2)
O10.10801 (14)0.52987 (10)−0.10574 (11)0.0238 (2)
O20.37834 (13)1.03015 (10)0.10823 (10)0.0196 (2)
N10.33089 (14)0.77459 (12)−0.05183 (12)0.0146 (2)
H10.43680.8292−0.06090.018*
N20.03816 (15)0.83557 (13)−0.09290 (12)0.0182 (2)
H2−0.04830.8420−0.06610.022*
N30.16459 (15)0.79008 (12)0.15566 (12)0.0155 (2)
H30.07530.69930.12250.019*
C10.25344 (17)0.61960 (14)−0.10878 (14)0.0153 (2)
C20.36184 (19)0.55503 (15)−0.18656 (15)0.0192 (3)
C30.02381 (19)0.84469 (16)−0.24394 (15)0.0201 (3)
H3A0.07040.7721−0.28740.024*
C4−0.1816 (2)0.78961 (18)−0.33779 (16)0.0259 (3)
H4A−0.25250.6837−0.33860.039*
H4B−0.19390.7916−0.43940.039*
H4C−0.23090.8581−0.29590.039*
C50.1427 (2)1.00657 (18)−0.24315 (16)0.0262 (3)
H5A0.27501.0341−0.18890.039*
H5B0.10511.0809−0.19470.039*
H5C0.12461.0090−0.34530.039*
C60.29579 (18)0.82087 (16)0.30596 (15)0.0208 (3)
H6A0.39760.92770.33610.025*
C70.1941 (2)0.81568 (18)0.41385 (16)0.0268 (3)
H7A0.13660.88880.40810.040*
H7B0.28340.84420.51480.040*
H7C0.09650.71080.38840.040*
C80.3848 (3)0.7080 (2)0.3090 (2)0.0390 (4)
H8A0.45680.71950.24370.058*
H8B0.28670.60200.27490.058*
H8C0.46850.72940.41050.058*
U11U22U33U12U13U23
P10.01625 (15)0.00992 (14)0.01683 (16)0.00349 (11)0.01039 (12)0.00433 (11)
Cl10.0425 (2)0.0345 (2)0.02119 (18)0.01780 (18)0.01803 (16)0.00824 (15)
F10.0208 (4)0.0305 (5)0.0358 (5)0.0133 (4)0.0117 (4)0.0065 (4)
F20.0469 (6)0.0162 (4)0.0489 (6)0.0186 (4)0.0300 (5)0.0147 (4)
O10.0247 (5)0.0128 (4)0.0318 (5)0.0005 (4)0.0187 (4)0.0040 (4)
O20.0237 (5)0.0115 (4)0.0233 (5)0.0026 (4)0.0158 (4)0.0030 (4)
N10.0148 (5)0.0108 (5)0.0195 (5)0.0034 (4)0.0109 (4)0.0043 (4)
N20.0203 (5)0.0223 (5)0.0191 (5)0.0112 (5)0.0126 (4)0.0091 (4)
N30.0153 (5)0.0125 (5)0.0161 (5)0.0012 (4)0.0081 (4)0.0042 (4)
C10.0178 (6)0.0119 (5)0.0171 (6)0.0054 (5)0.0089 (5)0.0047 (4)
C20.0243 (7)0.0134 (6)0.0246 (7)0.0089 (5)0.0131 (5)0.0076 (5)
C30.0255 (7)0.0244 (7)0.0177 (6)0.0151 (6)0.0118 (5)0.0076 (5)
C40.0262 (7)0.0281 (7)0.0222 (7)0.0131 (6)0.0066 (6)0.0045 (6)
C50.0276 (7)0.0329 (8)0.0226 (7)0.0121 (6)0.0129 (6)0.0148 (6)
C60.0176 (6)0.0220 (6)0.0180 (6)0.0032 (5)0.0057 (5)0.0069 (5)
C70.0352 (8)0.0334 (8)0.0180 (6)0.0181 (7)0.0124 (6)0.0099 (6)
C80.0395 (9)0.0669 (12)0.0355 (9)0.0384 (9)0.0212 (8)0.0278 (9)
P1—O21.4768 (9)C3—H3A1.0000
P1—N31.6190 (11)C4—H4A0.9800
P1—N21.6262 (12)C4—H4B0.9800
P1—N11.7039 (11)C4—H4C0.9800
Cl1—C21.7566 (14)C5—H5A0.9800
F1—C21.3366 (16)C5—H5B0.9800
F2—C21.3351 (15)C5—H5C0.9800
O1—C11.2127 (15)C6—C81.513 (2)
N1—C11.3447 (15)C6—C71.5164 (19)
N1—H10.8800C6—H6A1.0000
N2—C31.4775 (17)C7—H7A0.9800
N2—H20.8390C7—H7B0.9800
N3—C61.4754 (17)C7—H7C0.9800
N3—H30.8536C8—H8A0.9800
C1—C21.5399 (17)C8—H8B0.9800
C3—C51.520 (2)C8—H8C0.9800
C3—C41.5207 (19)
O2—P1—N3112.27 (5)C3—C4—H4A109.5
O2—P1—N2119.69 (6)C3—C4—H4B109.5
N3—P1—N2103.94 (6)H4A—C4—H4B109.5
O2—P1—N1105.13 (5)C3—C4—H4C109.5
N3—P1—N1112.31 (5)H4A—C4—H4C109.5
N2—P1—N1103.30 (6)H4B—C4—H4C109.5
C1—N1—P1122.76 (9)C3—C5—H5A109.5
C1—N1—H1118.6C3—C5—H5B109.5
P1—N1—H1118.6H5A—C5—H5B109.5
C3—N2—P1123.77 (9)C3—C5—H5C109.5
C3—N2—H2116.2H5A—C5—H5C109.5
P1—N2—H2117.0H5B—C5—H5C109.5
C6—N3—P1121.89 (8)N3—C6—C8111.29 (12)
C6—N3—H3112.7N3—C6—C7109.51 (11)
P1—N3—H3117.9C8—C6—C7111.49 (12)
O1—C1—N1126.01 (12)N3—C6—H6A108.1
O1—C1—C2118.79 (11)C8—C6—H6A108.1
N1—C1—C2115.19 (10)C7—C6—H6A108.1
F2—C2—F1107.66 (11)C6—C7—H7A109.5
F2—C2—C1109.72 (10)C6—C7—H7B109.5
F1—C2—C1112.14 (11)H7A—C7—H7B109.5
F2—C2—Cl1108.56 (10)C6—C7—H7C109.5
F1—C2—Cl1108.94 (9)H7A—C7—H7C109.5
C1—C2—Cl1109.74 (9)H7B—C7—H7C109.5
N2—C3—C5111.99 (11)C6—C8—H8A109.5
N2—C3—C4108.48 (11)C6—C8—H8B109.5
C5—C3—C4112.00 (12)H8A—C8—H8B109.5
N2—C3—H3A108.1C6—C8—H8C109.5
C5—C3—H3A108.1H8A—C8—H8C109.5
C4—C3—H3A108.1H8B—C8—H8C109.5
O2—P1—N1—C1168.43 (10)O1—C1—C2—F2−22.92 (17)
N3—P1—N1—C146.05 (12)N1—C1—C2—F2158.19 (11)
N2—P1—N1—C1−65.33 (11)O1—C1—C2—F1−142.50 (13)
O2—P1—N2—C372.29 (12)N1—C1—C2—F138.60 (15)
N3—P1—N2—C3−161.47 (10)O1—C1—C2—Cl196.28 (13)
N1—P1—N2—C3−44.04 (11)N1—C1—C2—Cl1−82.62 (12)
O2—P1—N3—C6−36.29 (12)P1—N2—C3—C5−61.53 (14)
N2—P1—N3—C6−167.07 (10)P1—N2—C3—C4174.35 (9)
N1—P1—N3—C681.94 (11)P1—N3—C6—C8−89.23 (13)
P1—N1—C1—O10.56 (19)P1—N3—C6—C7147.05 (10)
P1—N1—C1—C2179.37 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.881.872.7295 (13)164
N3—H3···O1ii0.852.142.9645 (14)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.881.872.7295 (13)164
N3—H3⋯O1ii0.852.142.9645 (14)163

Symmetry codes: (i) ; (ii) .

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1.  N,N'-Dibenzyl-N''-(2-chloro-2,2-difluoro-acet-yl)phospho-ric triamide.

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