Literature DB >> 22220041

N,N'-Dicyclo-hexyl-N''-(2,6-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.   

Abstract

In the title mol-ecule, C(21)H(32)F(2)N(3)O(2)P, the P=O and N-H groups are syn with respect to each other, and the P atom is bonded in a distorted tetra-hedral environment. The phosphoryl group adopts an anti orientation with respect to the carbonyl group. The angles at the tertiary N atoms (with bond-angle sums of 358.4 and 357.0°) confirm their sp(2) character. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds generate R(2) (2)(8) loops.

Entities:  

Year:  2011        PMID: 22220041      PMCID: PMC3247423          DOI: 10.1107/S1600536811043029

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond patterns in compounds containing a C(O)NHP(O) skeleton, see: Toghraee et al. (2011 ▶); Pourayoubi et al. (2011 ▶). For background to phospho­ric triamide compounds containing a C(O)NHP(O) skeleton, and related bond lengths, angles and torsion angles, see: Pourayoubi et al. (2010 ▶); Amirkhanov et al. (2010 ▶); Tarahhomi et al. (2011 ▶). For a description of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H32F2N3O2P M = 427.47 Triclinic, a = 10.2322 (6) Å b = 10.6188 (5) Å c = 11.2658 (6) Å α = 69.419 (1)° β = 79.269 (1)° γ = 81.536 (1)° V = 1121.45 (10) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 100 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.946, T max = 0.961 17147 measured reflections 5053 independent reflections 4421 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 1.05 5053 reflections 267 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043029/bh2384sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043029/bh2384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H32F2N3O2PZ = 2
Mr = 427.47F(000) = 456
Triclinic, P1Dx = 1.266 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.2322 (6) ÅCell parameters from 9954 reflections
b = 10.6188 (5) Åθ = 2.4–28.0°
c = 11.2658 (6) ŵ = 0.16 mm1
α = 69.419 (1)°T = 100 K
β = 79.269 (1)°Block, colourless
γ = 81.536 (1)°0.35 × 0.30 × 0.25 mm
V = 1121.45 (10) Å3
Bruker SMART CCD area-detector diffractometer5053 independent reflections
Radiation source: fine-focus sealed tube4421 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 28.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.946, Tmax = 0.961k = −13→13
17147 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0429P)2 + 0.4607P] where P = (Fo2 + 2Fc2)/3
5053 reflections(Δ/σ)max < 0.001
267 parametersΔρmax = 0.32 e Å3
1 restraintΔρmin = −0.34 e Å3
0 constraints
xyzUiso*/Ueq
P10.42370 (3)0.41644 (3)0.20824 (3)0.01482 (9)
F10.91928 (9)0.33633 (12)0.27902 (10)0.0491 (3)
F20.68054 (9)0.73518 (9)0.04970 (9)0.0363 (2)
O10.64907 (10)0.41510 (13)0.35266 (9)0.0347 (3)
O20.35023 (8)0.47928 (9)0.09668 (8)0.01753 (19)
N10.57558 (10)0.47579 (11)0.15972 (10)0.0170 (2)
H1N0.5985 (14)0.5054 (14)0.0781 (9)0.020*
N20.34278 (10)0.45423 (10)0.33252 (9)0.0165 (2)
N30.45145 (11)0.25173 (11)0.25782 (11)0.0244 (2)
C10.91678 (14)0.4643 (2)0.19652 (16)0.0392 (4)
C21.03613 (16)0.5176 (3)0.14059 (19)0.0497 (5)
H21.11820.46690.16190.060*
C31.03445 (16)0.6460 (3)0.0529 (2)0.0546 (6)
H31.11660.68420.01370.066*
C40.91532 (17)0.7212 (2)0.02025 (17)0.0463 (5)
H40.91480.8099−0.04050.056*
C50.79751 (14)0.66235 (18)0.07925 (15)0.0333 (4)
C60.79311 (13)0.53390 (17)0.16838 (13)0.0283 (3)
C70.66617 (13)0.46961 (15)0.23652 (13)0.0236 (3)
C80.27329 (12)0.59130 (12)0.31148 (11)0.0169 (2)
H80.25040.62550.22240.020*
C90.36202 (14)0.69035 (14)0.32103 (14)0.0258 (3)
H9A0.38900.65780.40750.031*
H9B0.44390.69510.25750.031*
C100.28793 (18)0.83088 (16)0.29625 (17)0.0388 (4)
H10A0.34510.89180.30810.047*
H10B0.27010.86730.20640.047*
C110.15626 (17)0.82817 (16)0.38598 (17)0.0385 (4)
H11A0.17430.80160.47530.046*
H11B0.10850.91970.36350.046*
C120.06889 (15)0.72885 (15)0.37619 (16)0.0328 (3)
H12A0.04340.76050.28920.039*
H12B−0.01390.72500.43850.039*
C130.14254 (13)0.58770 (14)0.40322 (13)0.0222 (3)
H13A0.16160.55290.49270.027*
H13B0.08520.52570.39330.027*
C140.36037 (14)0.37310 (14)0.46557 (12)0.0248 (3)
H14A0.38930.42970.50660.037*
H14B0.42810.29750.46580.037*
H14C0.27540.33810.51290.037*
C150.57908 (14)0.17673 (14)0.22547 (14)0.0277 (3)
H150.64730.24390.18740.033*
C160.57337 (16)0.11177 (15)0.12540 (14)0.0335 (3)
H16A0.54790.18240.04650.040*
H16B0.50420.04680.15850.040*
C170.70838 (18)0.03820 (16)0.09313 (15)0.0400 (4)
H17A0.6998−0.00880.03340.048*
H17B0.77500.10490.04970.048*
C180.7570 (2)−0.06431 (18)0.21368 (16)0.0476 (5)
H18A0.6957−0.13690.25170.057*
H18B0.8468−0.10590.19060.057*
C190.76312 (19)0.00220 (19)0.31179 (17)0.0465 (5)
H19A0.83030.06920.27660.056*
H19B0.7914−0.06710.39010.056*
C200.62703 (17)0.07244 (16)0.34615 (15)0.0362 (4)
H20A0.63410.11780.40760.043*
H20B0.56130.00450.38770.043*
C210.33158 (15)0.17706 (14)0.30012 (15)0.0304 (3)
H21A0.31010.15600.22830.046*
H21B0.25640.23250.33000.046*
H21C0.34830.09300.37020.046*
U11U22U33U12U13U23
P10.01077 (15)0.01879 (16)0.01385 (15)0.00019 (11)−0.00010 (11)−0.00559 (12)
F10.0221 (5)0.0863 (8)0.0401 (6)0.0158 (5)−0.0113 (4)−0.0274 (6)
F20.0281 (5)0.0433 (5)0.0395 (5)−0.0109 (4)0.0008 (4)−0.0161 (4)
O10.0187 (5)0.0684 (8)0.0170 (5)0.0035 (5)−0.0043 (4)−0.0164 (5)
O20.0119 (4)0.0264 (5)0.0154 (4)−0.0013 (3)−0.0006 (3)−0.0092 (4)
N10.0116 (5)0.0268 (5)0.0126 (5)−0.0012 (4)−0.0006 (4)−0.0074 (4)
N20.0140 (5)0.0206 (5)0.0124 (5)0.0026 (4)−0.0013 (4)−0.0044 (4)
N30.0186 (6)0.0198 (5)0.0281 (6)0.0026 (4)0.0060 (5)−0.0061 (5)
C10.0152 (7)0.0836 (13)0.0351 (8)0.0013 (7)−0.0044 (6)−0.0418 (9)
C20.0152 (7)0.1089 (17)0.0493 (11)−0.0083 (9)0.0001 (7)−0.0576 (12)
C30.0188 (8)0.1161 (19)0.0591 (12)−0.0293 (10)0.0157 (8)−0.0679 (13)
C40.0354 (9)0.0766 (13)0.0434 (10)−0.0298 (9)0.0141 (7)−0.0405 (10)
C50.0183 (7)0.0595 (10)0.0340 (8)−0.0111 (7)0.0033 (6)−0.0307 (8)
C60.0125 (6)0.0588 (10)0.0244 (7)−0.0046 (6)−0.0005 (5)−0.0274 (7)
C70.0127 (6)0.0419 (8)0.0202 (6)0.0028 (5)−0.0026 (5)−0.0170 (6)
C80.0153 (6)0.0198 (6)0.0155 (6)0.0015 (5)−0.0024 (4)−0.0070 (5)
C90.0236 (7)0.0311 (7)0.0262 (7)−0.0076 (6)0.0032 (5)−0.0154 (6)
C100.0485 (10)0.0270 (8)0.0419 (9)−0.0089 (7)0.0094 (8)−0.0186 (7)
C110.0439 (10)0.0299 (8)0.0419 (9)0.0036 (7)0.0046 (7)−0.0202 (7)
C120.0257 (8)0.0348 (8)0.0367 (8)0.0103 (6)−0.0032 (6)−0.0163 (7)
C130.0143 (6)0.0279 (7)0.0246 (7)0.0012 (5)0.0004 (5)−0.0120 (5)
C140.0206 (7)0.0320 (7)0.0141 (6)0.0053 (5)−0.0007 (5)−0.0023 (5)
C150.0244 (7)0.0221 (7)0.0261 (7)0.0086 (5)0.0052 (6)−0.0041 (5)
C160.0380 (9)0.0265 (7)0.0252 (7)0.0099 (6)0.0039 (6)−0.0049 (6)
C170.0461 (10)0.0314 (8)0.0272 (8)0.0161 (7)0.0073 (7)−0.0051 (6)
C180.0545 (12)0.0374 (9)0.0338 (9)0.0271 (8)0.0017 (8)−0.0075 (7)
C190.0461 (11)0.0447 (10)0.0351 (9)0.0269 (8)−0.0058 (8)−0.0087 (7)
C200.0383 (9)0.0343 (8)0.0266 (8)0.0154 (7)−0.0009 (7)−0.0080 (6)
C210.0281 (8)0.0204 (7)0.0364 (8)−0.0035 (5)0.0085 (6)−0.0078 (6)
P1—O21.4848 (9)C11—C121.523 (2)
P1—N21.6348 (11)C11—H11A0.9900
P1—N31.6363 (11)C11—H11B0.9900
P1—N11.6854 (10)C12—C131.5295 (19)
F1—C11.350 (2)C12—H12A0.9900
F2—C51.3552 (19)C12—H12B0.9900
O1—C71.2205 (16)C13—H13A0.9900
N1—C71.3612 (15)C13—H13B0.9900
N1—H1N0.859 (9)C14—H14A0.9800
N2—C141.4725 (15)C14—H14B0.9800
N2—C81.4819 (15)C14—H14C0.9800
N3—C211.4707 (17)C15—C161.528 (2)
N3—C151.4810 (17)C15—C201.5314 (19)
C1—C21.369 (2)C15—H151.0000
C1—C61.399 (2)C16—C171.532 (2)
C2—C31.374 (3)C16—H16A0.9900
C2—H20.9500C16—H16B0.9900
C3—C41.390 (3)C17—C181.526 (2)
C3—H30.9500C17—H17A0.9900
C4—C51.384 (2)C17—H17B0.9900
C4—H40.9500C18—C191.521 (3)
C5—C61.382 (2)C18—H18A0.9900
C6—C71.5046 (18)C18—H18B0.9900
C8—C131.5271 (17)C19—C201.530 (2)
C8—C91.5294 (17)C19—H19A0.9900
C8—H81.0000C19—H19B0.9900
C9—C101.527 (2)C20—H20A0.9900
C9—H9A0.9900C20—H20B0.9900
C9—H9B0.9900C21—H21A0.9800
C10—C111.524 (2)C21—H21B0.9800
C10—H10A0.9900C21—H21C0.9800
C10—H10B0.9900
O2—P1—N2110.40 (5)C11—C12—C13110.95 (12)
O2—P1—N3116.97 (6)C11—C12—H12A109.5
N2—P1—N3105.60 (6)C13—C12—H12A109.5
O2—P1—N1105.57 (5)C11—C12—H12B109.5
N2—P1—N1112.66 (5)C13—C12—H12B109.5
N3—P1—N1105.73 (6)H12A—C12—H12B108.0
C7—N1—P1126.27 (9)C8—C13—C12110.68 (11)
C7—N1—H1N118.7 (10)C8—C13—H13A109.5
P1—N1—H1N114.7 (10)C12—C13—H13A109.5
C14—N2—C8116.58 (10)C8—C13—H13B109.5
C14—N2—P1123.33 (9)C12—C13—H13B109.5
C8—N2—P1118.49 (8)H13A—C13—H13B108.1
C21—N3—C15116.90 (11)N2—C14—H14A109.5
C21—N3—P1115.51 (9)N2—C14—H14B109.5
C15—N3—P1124.57 (9)H14A—C14—H14B109.5
F1—C1—C2118.10 (16)N2—C14—H14C109.5
F1—C1—C6118.56 (14)H14A—C14—H14C109.5
C2—C1—C6123.28 (19)H14B—C14—H14C109.5
C1—C2—C3118.40 (17)N3—C15—C16113.22 (12)
C1—C2—H2120.8N3—C15—C20111.07 (11)
C3—C2—H2120.8C16—C15—C20111.21 (12)
C2—C3—C4121.52 (15)N3—C15—H15107.0
C2—C3—H3119.2C16—C15—H15107.0
C4—C3—H3119.2C20—C15—H15107.0
C5—C4—C3117.7 (2)C15—C16—C17111.21 (14)
C5—C4—H4121.1C15—C16—H16A109.4
C3—C4—H4121.1C17—C16—H16A109.4
F2—C5—C6118.33 (12)C15—C16—H16B109.4
F2—C5—C4118.37 (17)C17—C16—H16B109.4
C6—C5—C4123.29 (16)H16A—C16—H16B108.0
C5—C6—C1115.79 (14)C18—C17—C16111.24 (13)
C5—C6—C7124.16 (13)C18—C17—H17A109.4
C1—C6—C7120.02 (15)C16—C17—H17A109.4
O1—C7—N1123.71 (12)C18—C17—H17B109.4
O1—C7—C6120.91 (11)C16—C17—H17B109.4
N1—C7—C6115.38 (11)H17A—C17—H17B108.0
N2—C8—C13111.30 (10)C19—C18—C17111.16 (14)
N2—C8—C9112.22 (10)C19—C18—H18A109.4
C13—C8—C9110.75 (10)C17—C18—H18A109.4
N2—C8—H8107.4C19—C18—H18B109.4
C13—C8—H8107.4C17—C18—H18B109.4
C9—C8—H8107.4H18A—C18—H18B108.0
C10—C9—C8110.65 (12)C18—C19—C20110.98 (16)
C10—C9—H9A109.5C18—C19—H19A109.4
C8—C9—H9A109.5C20—C19—H19A109.4
C10—C9—H9B109.5C18—C19—H19B109.4
C8—C9—H9B109.5C20—C19—H19B109.4
H9A—C9—H9B108.1H19A—C19—H19B108.0
C11—C10—C9111.80 (13)C19—C20—C15110.31 (12)
C11—C10—H10A109.3C19—C20—H20A109.6
C9—C10—H10A109.3C15—C20—H20A109.6
C11—C10—H10B109.3C19—C20—H20B109.6
C9—C10—H10B109.3C15—C20—H20B109.6
H10A—C10—H10B107.9H20A—C20—H20B108.1
C12—C11—C10110.74 (13)N3—C21—H21A109.5
C12—C11—H11A109.5N3—C21—H21B109.5
C10—C11—H11A109.5H21A—C21—H21B109.5
C12—C11—H11B109.5N3—C21—H21C109.5
C10—C11—H11B109.5H21A—C21—H21C109.5
H11A—C11—H11B108.1H21B—C21—H21C109.5
O2—P1—N1—C7164.83 (11)P1—N1—C7—C6−178.43 (10)
N2—P1—N1—C744.27 (13)C5—C6—C7—O1−131.18 (15)
N3—P1—N1—C7−70.59 (12)C1—C6—C7—O147.0 (2)
O2—P1—N2—C14157.51 (10)C5—C6—C7—N149.58 (19)
N3—P1—N2—C1430.20 (11)C1—C6—C7—N1−132.22 (14)
N1—P1—N2—C14−84.74 (11)C14—N2—C8—C13−50.03 (14)
O2—P1—N2—C8−37.41 (10)P1—N2—C8—C13143.89 (9)
N3—P1—N2—C8−164.72 (9)C14—N2—C8—C974.73 (13)
N1—P1—N2—C880.35 (9)P1—N2—C8—C9−91.36 (11)
O2—P1—N3—C21−60.31 (12)N2—C8—C9—C10178.90 (11)
N2—P1—N3—C2162.93 (11)C13—C8—C9—C10−56.04 (15)
N1—P1—N3—C21−177.45 (10)C8—C9—C10—C1155.54 (17)
O2—P1—N3—C1599.32 (12)C9—C10—C11—C12−55.57 (19)
N2—P1—N3—C15−137.44 (11)C10—C11—C12—C1356.09 (18)
N1—P1—N3—C15−17.82 (13)N2—C8—C13—C12−177.37 (10)
F1—C1—C2—C3177.59 (14)C9—C8—C13—C1257.05 (14)
C6—C1—C2—C30.3 (2)C11—C12—C13—C8−57.15 (16)
C1—C2—C3—C4−0.3 (2)C21—N3—C15—C1654.69 (16)
C2—C3—C4—C50.0 (2)P1—N3—C15—C16−104.68 (13)
C3—C4—C5—F2179.09 (13)C21—N3—C15—C20−71.27 (17)
C3—C4—C5—C60.2 (2)P1—N3—C15—C20129.36 (12)
F2—C5—C6—C1−179.04 (12)N3—C15—C16—C17178.75 (11)
C4—C5—C6—C1−0.2 (2)C20—C15—C16—C17−55.36 (16)
F2—C5—C6—C7−0.8 (2)C15—C16—C17—C1854.61 (19)
C4—C5—C6—C7178.10 (13)C16—C17—C18—C19−55.4 (2)
F1—C1—C6—C5−177.37 (12)C17—C18—C19—C2056.9 (2)
C2—C1—C6—C5−0.1 (2)C18—C19—C20—C15−57.2 (2)
F1—C1—C6—C74.3 (2)N3—C15—C20—C19−176.48 (14)
C2—C1—C6—C7−178.47 (13)C16—C15—C20—C1956.45 (18)
P1—N1—C7—O12.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.86 (1)1.90 (1)2.7330 (13)165.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.86 (1)1.90 (1)2.7330 (13)165 (1)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Anahid Saneei; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

3.  N,N'-Di-tert-butyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  3 in total

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