Literature DB >> 21589251

catena-Poly[[(3,5-dicarb-oxy-pyrazine-2,6-dicarboxyl-ato-κO,N,O)lithium(I)]-μ-aqua-[triaqua-lithium(I)]-μ-aqua].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The title coordination polymer, [Li(2)(C(8)H(2)N(2)O(8))(H(2)O)(5)](n) contains two symmetry-independent Li(+) ions; one is coordin-ated by five water O atoms, the other by an O,N,O'-tridentate doubly deprotonated pyrazine-2,3,5,6-tetra-carboxyl-ate ligand and two water O atoms. Water mol-ecules bridge adjacent Li(+) ions into ribbons propagating in [100]; an alternative analysis of the structure considers it to contain alternating [Li(C(8)H(2)N(2)O(8))(H(2)O)(2)](-) anions and [Li(H(2)O)(3)](+) cations. In the polymeric model, both lithium ions show distorted trigonal-bipyramidal coordination geometries. Within the ligand, the carboxyl H atoms participate in short, almost symmetric O⋯H⋯O hydrogen bonds in which the non-coordinated carboxyl-ate O atoms are donors and acceptors. In the crystal, the ribbons inter-act via a network of O-H⋯O hydrogen bonds in which the coordinated water mol-ecules act as donors and ligand carboxyl-ate O atoms as acceptors.

Entities:  

Year:  2010        PMID: 21589251      PMCID: PMC3011810          DOI: 10.1107/S1600536810045903

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of 3d transition metal complexes with pyrazine-2,3,5,6-tetra­carboxyl­ate and water ligands, see: Alfonso et al. (2001 ▶); Graf et al. (1993 ▶); Marioni et al. (1986 ▶); Marioni et al. (1994 ▶). For the structure of a Ca(II) complex, see: Starosta & Leciejewicz (2008 ▶). For the structure of a Li complex with pyrazine-2,3-dicarboxyl­ate and water ligands, see: Tombul et al. (2008 ▶). For a review on metal organic frameworks (MOFs), see: MacGillivray (2010 ▶).

Experimental

Crystal data

[Li2(C8H2N2O8)(H2O)5] M = 358.08 Monoclinic, a = 6.8806 (14) Å b = 11.767 (2) Å c = 8.8082 (18) Å β = 103.59 (3)° V = 693.2 (2) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.23 × 0.21 × 0.17 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) ▶ T min = 0.971, T max = 0.975 2291 measured reflections 2136 independent reflections 1459 reflections with I > 2σ(I) R int = 0.012 3 standard reflections every 200 reflections intensity decay: 0.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.127 S = 1.03 2136 reflections 148 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.32 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045903/hb5710sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045903/hb5710Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li2(C8H2N2O8)(H2O)5]F(000) = 368
Mr = 358.08Dx = 1.716 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
a = 6.8806 (14) ÅCell parameters from 25 reflections
b = 11.767 (2) Åθ = 6–15°
c = 8.8082 (18) ŵ = 0.16 mm1
β = 103.59 (3)°T = 293 K
V = 693.2 (2) Å3Blocks, colourless
Z = 20.23 × 0.21 × 0.17 mm
Kuma KM-4 four-circle diffractometer1459 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.012
graphiteθmax = 30.1°, θmin = 2.4°
profile data from ω/2θ scansh = 0→9
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→16
Tmin = 0.971, Tmax = 0.975l = −12→12
2291 measured reflections3 standard reflections every 200 reflections
2136 independent reflections intensity decay: 0.5%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0886P)2 + 0.040P] where P = (Fo2 + 2Fc2)/3
2136 reflections(Δ/σ)max < 0.001
148 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4556 (2)0.75000.72520 (15)0.0184 (3)
N20.1994 (2)0.75000.44032 (15)0.0197 (3)
O40.61711 (14)0.92277 (7)0.87982 (11)0.0287 (2)
O20.06363 (16)0.93417 (8)0.28320 (11)0.0354 (3)
O10.21919 (16)1.05057 (7)0.46536 (10)0.0315 (3)
O30.44557 (15)1.04935 (7)0.71677 (11)0.0296 (2)
C50.49353 (17)0.94719 (9)0.76029 (13)0.0207 (2)
C30.26124 (16)0.84858 (8)0.50943 (12)0.0178 (2)
C20.39451 (16)0.84873 (8)0.65765 (12)0.0176 (2)
C60.17301 (17)0.95080 (10)0.41030 (13)0.0220 (2)
O60.16203 (15)0.91197 (8)0.92116 (12)0.0334 (3)
O80.9298 (2)0.75001.09008 (14)0.0276 (3)
O70.4555 (2)0.75001.09036 (16)0.0338 (3)
O5−0.0754 (3)0.75000.72326 (19)0.0438 (4)
Li20.1189 (6)0.75000.9392 (4)0.0332 (7)
Li10.6568 (5)0.75000.9480 (4)0.0347 (7)
H610.071 (3)0.9536 (18)0.853 (2)0.051 (6)*
H620.230 (4)0.962 (2)0.992 (3)0.079 (8)*
H810.976 (3)0.8072 (17)1.148 (2)0.054 (6)*
H710.484 (3)0.8066 (16)1.154 (2)0.044 (5)*
H51−0.125 (3)0.8094 (16)0.661 (2)0.044 (5)*
H320.336 (3)1.055 (2)0.588 (2)0.061 (7)*
U11U22U33U12U13U23
N10.0231 (6)0.0119 (5)0.0173 (5)0.000−0.0007 (5)0.000
N20.0242 (7)0.0148 (6)0.0177 (6)0.0000.0002 (5)0.000
O40.0329 (5)0.0198 (4)0.0261 (4)−0.0035 (3)−0.0079 (4)−0.0019 (3)
O20.0486 (6)0.0218 (4)0.0254 (4)0.0038 (4)−0.0124 (4)0.0033 (3)
O10.0485 (6)0.0135 (4)0.0257 (4)0.0029 (4)−0.0046 (4)0.0017 (3)
O30.0409 (5)0.0126 (4)0.0290 (4)−0.0016 (3)−0.0047 (4)−0.0019 (3)
C50.0244 (5)0.0145 (5)0.0211 (5)−0.0031 (4)0.0008 (4)−0.0018 (4)
C30.0220 (5)0.0130 (5)0.0166 (4)0.0011 (4)0.0011 (4)0.0014 (4)
C20.0212 (5)0.0130 (4)0.0168 (4)−0.0008 (4)0.0010 (4)−0.0005 (3)
C60.0282 (6)0.0155 (5)0.0201 (5)0.0029 (4)0.0011 (4)0.0033 (4)
O60.0373 (5)0.0181 (4)0.0354 (5)−0.0004 (4)−0.0104 (4)0.0004 (4)
O80.0340 (7)0.0225 (6)0.0212 (6)0.000−0.0037 (5)0.000
O70.0486 (9)0.0199 (6)0.0288 (6)0.0000.0005 (6)0.000
O50.0585 (10)0.0214 (7)0.0379 (8)0.000−0.0160 (7)0.000
Li20.0433 (18)0.0236 (15)0.0341 (16)0.0000.0117 (14)0.000
Li10.0393 (17)0.0264 (15)0.0295 (15)0.000−0.0099 (13)0.000
Li1—N12.119 (4)N2—C3i1.3324 (12)
Li1—O42.1194 (13)O4—C51.2221 (15)
Li1—O81.997 (4)O2—C61.2091 (15)
Li1—O72.075 (5)O1—C61.2815 (15)
Li1—O4i2.1194 (13)O1—H321.19 (2)
Li2—O61.9412 (12)O3—C51.2811 (14)
Li2—O72.385 (4)O3—H321.21 (2)
Li2—O52.052 (4)C5—C21.5279 (15)
Li2—O6i1.9412 (12)C3—C21.4081 (15)
Li2—O8ii2.067 (4)C3—C61.5260 (14)
Li2—Li1ii3.199 (5)O6—H610.90 (2)
Li1—Li2iii3.199 (5)O6—H620.91 (3)
O8—Li2iii2.067 (4)O8—H810.86 (2)
N1—C2i1.3277 (12)O7—H710.862 (19)
N1—C21.3277 (12)O5—H510.903 (19)
N2—C31.3324 (12)
C2i—N1—C2122.10 (13)O6—Li2—O590.18 (11)
C2i—N1—Li1118.95 (6)O6i—Li2—O590.18 (11)
C2—N1—Li1118.95 (6)O6—Li2—O8ii100.61 (11)
C3—N2—C3i121.05 (13)O6i—Li2—O8ii100.61 (11)
C5—O4—Li1119.15 (11)O5—Li2—O8ii102.98 (18)
C6—O1—H32116.2 (12)O6—Li2—O784.17 (12)
C5—O3—H32113.3 (11)O6i—Li2—O784.17 (12)
O4—C5—O3123.82 (10)O5—Li2—O7148.57 (19)
O4—C5—C2117.04 (10)O8ii—Li2—O7108.45 (15)
O3—C5—C2119.13 (9)O6—Li2—Li1ii100.02 (12)
N2—C3—C2119.55 (9)O6i—Li2—Li1ii100.02 (12)
N2—C3—C6112.55 (9)O5—Li2—Li1ii65.66 (13)
C2—C3—C6127.91 (9)O8ii—Li2—Li1ii37.32 (10)
N1—C2—C3118.88 (9)O7—Li2—Li1ii145.77 (15)
N1—C2—C5110.38 (9)O8—Li1—O7106.53 (16)
C3—C2—C5130.71 (9)O8—Li1—O4i102.54 (10)
O2—C6—O1122.94 (11)O7—Li1—O4i96.41 (12)
O2—C6—C3118.66 (10)O8—Li1—O4102.54 (10)
O1—C6—C3118.40 (9)O7—Li1—O496.40 (12)
Li2—O6—H61119.4 (14)O4i—Li1—O4147.18 (17)
Li2—O6—H62130.5 (17)O8—Li1—N1153.3 (2)
H61—O6—H62106 (2)O7—Li1—N1100.14 (17)
Li1—O8—Li2iii103.81 (16)O4i—Li1—N174.03 (9)
Li1—O8—H81122.3 (13)O4—Li1—N174.03 (9)
Li2iii—O8—H81100.2 (14)O8—Li1—Li2iii38.87 (10)
Li1—O7—Li2111.17 (14)O7—Li1—Li2iii145.40 (16)
Li1—O7—H71107.9 (13)O4i—Li1—Li2iii93.19 (12)
Li2—O7—H71114.0 (13)O4—Li1—Li2iii93.19 (12)
Li2—O5—H51129.1 (12)N1—Li1—Li2iii114.46 (17)
O6—Li2—O6i158.1 (2)
D—H···AD—HH···AD···AD—H···A
O6—H61···O2iv0.90 (2)1.87 (2)2.7597 (14)165.4 (19)
O6—H62···O4v0.91 (3)1.91 (3)2.8129 (14)173 (2)
O8—H81···O2vi0.86 (2)1.92 (2)2.7753 (13)175.9 (19)
O7—H71···O3v0.862 (19)2.037 (19)2.8950 (12)173.8 (17)
O5—H51···O1iv0.903 (19)2.010 (19)2.9110 (13)175.4 (17)
O1—H32···O31.19 (2)1.21 (2)2.3894 (15)173 (2)
Table 1

Selected bond lengths (Å)

Li1—N12.119 (4)
Li1—O42.1194 (13)
Li1—O81.997 (4)
Li1—O72.075 (5)
Li1—O4i2.1194 (13)
Li2—O61.9412 (12)
Li2—O72.385 (4)
Li2—O52.052 (4)
Li2—O6i1.9412 (12)
Li2—O8ii2.067 (4)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H61⋯O2iii0.90 (2)1.87 (2)2.7597 (14)165.4 (19)
O6—H62⋯O4iv0.91 (3)1.91 (3)2.8129 (14)173 (2)
O8—H81⋯O2v0.86 (2)1.92 (2)2.7753 (13)175.9 (19)
O7—H71⋯O3iv0.862 (19)2.037 (19)2.8950 (12)173.8 (17)
O5—H51⋯O1iii0.903 (19)2.010 (19)2.9110 (13)175.4 (17)
O1—H32⋯O31.19 (2)1.21 (2)2.3894 (15)173 (2)

Symmetry codes: (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  X-ray powder structure of a new two-dimensional nickel(II) coordination polymer with pyrazine-2,3,5,6-tetracarboxylic acid.

Authors:  M Alfonso; A Neels; H Stoeckli-Evans
Journal:  Acta Crystallogr C       Date:  2001-10-12       Impact factor: 1.172

3.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20
  3 in total
  6 in total

1.  catena-Poly[[(aqualithium)-μ-3-carboxypyrazine-2-carboxylato-κO,N:O,N] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

2.  Poly[di-μ-aqua-μ(4)-(pyrazine-2,5-dicarboxyl-ato)-dilithium(I)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-08

3.  catena-Poly[[(6-carb-oxy-pyrazine-2-carboxyl-ato)lithium]-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09

4.  (μ-Di-hydrogen pyrazine-2,3,5,6-tetra-carboxyl-ato-κ(6) O (2),N (1),O (6);O (3),N (4),O (5))bis-(di-aqua-lithium) monohydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-09

5.  Tetra-methyl-ammonium hydrogen terephthalate.

Authors:  Leila Dolatyari; Samad Shoghpour Bayraq; Sara Sharifi; Ali Ramazani; Ali Morsali; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26

6.  catena-Poly[[lithium-μ2-(di-hydrogen pyrazine-2,3,5,6-tetra-carboxyl-ato)-κ(6) O (2),N (1),O (6);O (3),N (4),O (5)-lithium-di-μ-aqua-κ(4) O:O] 2.5-hydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-24
  6 in total

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