| Literature DB >> 21589251 |
Wojciech Starosta1, Janusz Leciejewicz.
Abstract
The title coordination polymer, [Li(2)(C(8)H(2)N(2)O(8))(H(2)O)(5)](n) contains two symmetry-independent Li(+) ions; one is coordin-ated by five water O atoms, the other by an O,N,O'-tridentate doubly deprotonated pyrazine-2,3,5,6-tetra-carboxyl-ate ligand and two water O atoms. Water mol-ecules bridge adjacent Li(+) ions into ribbons propagating in [100]; an alternative analysis of the structure considers it to contain alternating [Li(C(8)H(2)N(2)O(8))(H(2)O)(2)](-) anions and [Li(H(2)O)(3)](+) cations. In the polymeric model, both lithium ions show distorted trigonal-bipyramidal coordination geometries. Within the ligand, the carboxyl H atoms participate in short, almost symmetric O⋯H⋯O hydrogen bonds in which the non-coordinated carboxyl-ate O atoms are donors and acceptors. In the crystal, the ribbons inter-act via a network of O-H⋯O hydrogen bonds in which the coordinated water mol-ecules act as donors and ligand carboxyl-ate O atoms as acceptors.Entities:
Year: 2010 PMID: 21589251 PMCID: PMC3011810 DOI: 10.1107/S1600536810045903
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Li2(C8H2N2O8)(H2O)5] | |
| Monoclinic, | Mo |
| Cell parameters from 25 reflections | |
| θ = 6–15° | |
| µ = 0.16 mm−1 | |
| β = 103.59 (3)° | |
| Blocks, colourless | |
| 0.23 × 0.21 × 0.17 mm |
| Kuma KM-4 four-circle diffractometer | 1459 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 30.1°, θmin = 2.4° |
| profile data from ω/2θ scans | |
| Absorption correction: analytical ( | |
| 2291 measured reflections | 3 standard reflections every 200 reflections |
| 2136 independent reflections | intensity decay: 0.5% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2136 reflections | (Δ/σ)max < 0.001 |
| 148 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.4556 (2) | 0.7500 | 0.72520 (15) | 0.0184 (3) | |
| N2 | 0.1994 (2) | 0.7500 | 0.44032 (15) | 0.0197 (3) | |
| O4 | 0.61711 (14) | 0.92277 (7) | 0.87982 (11) | 0.0287 (2) | |
| O2 | 0.06363 (16) | 0.93417 (8) | 0.28320 (11) | 0.0354 (3) | |
| O1 | 0.21919 (16) | 1.05057 (7) | 0.46536 (10) | 0.0315 (3) | |
| O3 | 0.44557 (15) | 1.04935 (7) | 0.71677 (11) | 0.0296 (2) | |
| C5 | 0.49353 (17) | 0.94719 (9) | 0.76029 (13) | 0.0207 (2) | |
| C3 | 0.26124 (16) | 0.84858 (8) | 0.50943 (12) | 0.0178 (2) | |
| C2 | 0.39451 (16) | 0.84873 (8) | 0.65765 (12) | 0.0176 (2) | |
| C6 | 0.17301 (17) | 0.95080 (10) | 0.41030 (13) | 0.0220 (2) | |
| O6 | 0.16203 (15) | 0.91197 (8) | 0.92116 (12) | 0.0334 (3) | |
| O8 | 0.9298 (2) | 0.7500 | 1.09008 (14) | 0.0276 (3) | |
| O7 | 0.4555 (2) | 0.7500 | 1.09036 (16) | 0.0338 (3) | |
| O5 | −0.0754 (3) | 0.7500 | 0.72326 (19) | 0.0438 (4) | |
| Li2 | 0.1189 (6) | 0.7500 | 0.9392 (4) | 0.0332 (7) | |
| Li1 | 0.6568 (5) | 0.7500 | 0.9480 (4) | 0.0347 (7) | |
| H61 | 0.071 (3) | 0.9536 (18) | 0.853 (2) | 0.051 (6)* | |
| H62 | 0.230 (4) | 0.962 (2) | 0.992 (3) | 0.079 (8)* | |
| H81 | 0.976 (3) | 0.8072 (17) | 1.148 (2) | 0.054 (6)* | |
| H71 | 0.484 (3) | 0.8066 (16) | 1.154 (2) | 0.044 (5)* | |
| H51 | −0.125 (3) | 0.8094 (16) | 0.661 (2) | 0.044 (5)* | |
| H32 | 0.336 (3) | 1.055 (2) | 0.588 (2) | 0.061 (7)* |
| N1 | 0.0231 (6) | 0.0119 (5) | 0.0173 (5) | 0.000 | −0.0007 (5) | 0.000 |
| N2 | 0.0242 (7) | 0.0148 (6) | 0.0177 (6) | 0.000 | 0.0002 (5) | 0.000 |
| O4 | 0.0329 (5) | 0.0198 (4) | 0.0261 (4) | −0.0035 (3) | −0.0079 (4) | −0.0019 (3) |
| O2 | 0.0486 (6) | 0.0218 (4) | 0.0254 (4) | 0.0038 (4) | −0.0124 (4) | 0.0033 (3) |
| O1 | 0.0485 (6) | 0.0135 (4) | 0.0257 (4) | 0.0029 (4) | −0.0046 (4) | 0.0017 (3) |
| O3 | 0.0409 (5) | 0.0126 (4) | 0.0290 (4) | −0.0016 (3) | −0.0047 (4) | −0.0019 (3) |
| C5 | 0.0244 (5) | 0.0145 (5) | 0.0211 (5) | −0.0031 (4) | 0.0008 (4) | −0.0018 (4) |
| C3 | 0.0220 (5) | 0.0130 (5) | 0.0166 (4) | 0.0011 (4) | 0.0011 (4) | 0.0014 (4) |
| C2 | 0.0212 (5) | 0.0130 (4) | 0.0168 (4) | −0.0008 (4) | 0.0010 (4) | −0.0005 (3) |
| C6 | 0.0282 (6) | 0.0155 (5) | 0.0201 (5) | 0.0029 (4) | 0.0011 (4) | 0.0033 (4) |
| O6 | 0.0373 (5) | 0.0181 (4) | 0.0354 (5) | −0.0004 (4) | −0.0104 (4) | 0.0004 (4) |
| O8 | 0.0340 (7) | 0.0225 (6) | 0.0212 (6) | 0.000 | −0.0037 (5) | 0.000 |
| O7 | 0.0486 (9) | 0.0199 (6) | 0.0288 (6) | 0.000 | 0.0005 (6) | 0.000 |
| O5 | 0.0585 (10) | 0.0214 (7) | 0.0379 (8) | 0.000 | −0.0160 (7) | 0.000 |
| Li2 | 0.0433 (18) | 0.0236 (15) | 0.0341 (16) | 0.000 | 0.0117 (14) | 0.000 |
| Li1 | 0.0393 (17) | 0.0264 (15) | 0.0295 (15) | 0.000 | −0.0099 (13) | 0.000 |
| Li1—N1 | 2.119 (4) | N2—C3i | 1.3324 (12) |
| Li1—O4 | 2.1194 (13) | O4—C5 | 1.2221 (15) |
| Li1—O8 | 1.997 (4) | O2—C6 | 1.2091 (15) |
| Li1—O7 | 2.075 (5) | O1—C6 | 1.2815 (15) |
| Li1—O4i | 2.1194 (13) | O1—H32 | 1.19 (2) |
| Li2—O6 | 1.9412 (12) | O3—C5 | 1.2811 (14) |
| Li2—O7 | 2.385 (4) | O3—H32 | 1.21 (2) |
| Li2—O5 | 2.052 (4) | C5—C2 | 1.5279 (15) |
| Li2—O6i | 1.9412 (12) | C3—C2 | 1.4081 (15) |
| Li2—O8ii | 2.067 (4) | C3—C6 | 1.5260 (14) |
| Li2—Li1ii | 3.199 (5) | O6—H61 | 0.90 (2) |
| Li1—Li2iii | 3.199 (5) | O6—H62 | 0.91 (3) |
| O8—Li2iii | 2.067 (4) | O8—H81 | 0.86 (2) |
| N1—C2i | 1.3277 (12) | O7—H71 | 0.862 (19) |
| N1—C2 | 1.3277 (12) | O5—H51 | 0.903 (19) |
| N2—C3 | 1.3324 (12) | ||
| C2i—N1—C2 | 122.10 (13) | O6—Li2—O5 | 90.18 (11) |
| C2i—N1—Li1 | 118.95 (6) | O6i—Li2—O5 | 90.18 (11) |
| C2—N1—Li1 | 118.95 (6) | O6—Li2—O8ii | 100.61 (11) |
| C3—N2—C3i | 121.05 (13) | O6i—Li2—O8ii | 100.61 (11) |
| C5—O4—Li1 | 119.15 (11) | O5—Li2—O8ii | 102.98 (18) |
| C6—O1—H32 | 116.2 (12) | O6—Li2—O7 | 84.17 (12) |
| C5—O3—H32 | 113.3 (11) | O6i—Li2—O7 | 84.17 (12) |
| O4—C5—O3 | 123.82 (10) | O5—Li2—O7 | 148.57 (19) |
| O4—C5—C2 | 117.04 (10) | O8ii—Li2—O7 | 108.45 (15) |
| O3—C5—C2 | 119.13 (9) | O6—Li2—Li1ii | 100.02 (12) |
| N2—C3—C2 | 119.55 (9) | O6i—Li2—Li1ii | 100.02 (12) |
| N2—C3—C6 | 112.55 (9) | O5—Li2—Li1ii | 65.66 (13) |
| C2—C3—C6 | 127.91 (9) | O8ii—Li2—Li1ii | 37.32 (10) |
| N1—C2—C3 | 118.88 (9) | O7—Li2—Li1ii | 145.77 (15) |
| N1—C2—C5 | 110.38 (9) | O8—Li1—O7 | 106.53 (16) |
| C3—C2—C5 | 130.71 (9) | O8—Li1—O4i | 102.54 (10) |
| O2—C6—O1 | 122.94 (11) | O7—Li1—O4i | 96.41 (12) |
| O2—C6—C3 | 118.66 (10) | O8—Li1—O4 | 102.54 (10) |
| O1—C6—C3 | 118.40 (9) | O7—Li1—O4 | 96.40 (12) |
| Li2—O6—H61 | 119.4 (14) | O4i—Li1—O4 | 147.18 (17) |
| Li2—O6—H62 | 130.5 (17) | O8—Li1—N1 | 153.3 (2) |
| H61—O6—H62 | 106 (2) | O7—Li1—N1 | 100.14 (17) |
| Li1—O8—Li2iii | 103.81 (16) | O4i—Li1—N1 | 74.03 (9) |
| Li1—O8—H81 | 122.3 (13) | O4—Li1—N1 | 74.03 (9) |
| Li2iii—O8—H81 | 100.2 (14) | O8—Li1—Li2iii | 38.87 (10) |
| Li1—O7—Li2 | 111.17 (14) | O7—Li1—Li2iii | 145.40 (16) |
| Li1—O7—H71 | 107.9 (13) | O4i—Li1—Li2iii | 93.19 (12) |
| Li2—O7—H71 | 114.0 (13) | O4—Li1—Li2iii | 93.19 (12) |
| Li2—O5—H51 | 129.1 (12) | N1—Li1—Li2iii | 114.46 (17) |
| O6—Li2—O6i | 158.1 (2) |
| H··· | ||||
| O6—H61···O2iv | 0.90 (2) | 1.87 (2) | 2.7597 (14) | 165.4 (19) |
| O6—H62···O4v | 0.91 (3) | 1.91 (3) | 2.8129 (14) | 173 (2) |
| O8—H81···O2vi | 0.86 (2) | 1.92 (2) | 2.7753 (13) | 175.9 (19) |
| O7—H71···O3v | 0.862 (19) | 2.037 (19) | 2.8950 (12) | 173.8 (17) |
| O5—H51···O1iv | 0.903 (19) | 2.010 (19) | 2.9110 (13) | 175.4 (17) |
| O1—H32···O3 | 1.19 (2) | 1.21 (2) | 2.3894 (15) | 173 (2) |
Selected bond lengths (Å)
| Li1—N1 | 2.119 (4) |
| Li1—O4 | 2.1194 (13) |
| Li1—O8 | 1.997 (4) |
| Li1—O7 | 2.075 (5) |
| Li1—O4i | 2.1194 (13) |
| Li2—O6 | 1.9412 (12) |
| Li2—O7 | 2.385 (4) |
| Li2—O5 | 2.052 (4) |
| Li2—O6i | 1.9412 (12) |
| Li2—O8ii | 2.067 (4) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O6—H61⋯O2iii | 0.90 (2) | 1.87 (2) | 2.7597 (14) | 165.4 (19) |
| O6—H62⋯O4iv | 0.91 (3) | 1.91 (3) | 2.8129 (14) | 173 (2) |
| O8—H81⋯O2v | 0.86 (2) | 1.92 (2) | 2.7753 (13) | 175.9 (19) |
| O7—H71⋯O3iv | 0.862 (19) | 2.037 (19) | 2.8950 (12) | 173.8 (17) |
| O5—H51⋯O1iii | 0.903 (19) | 2.010 (19) | 2.9110 (13) | 175.4 (17) |
| O1—H32⋯O3 | 1.19 (2) | 1.21 (2) | 2.3894 (15) | 173 (2) |
Symmetry codes: (iii) ; (iv) ; (v) .