Literature DB >> 24940214

catena-Poly[[lithium-μ2-(di-hydrogen pyrazine-2,3,5,6-tetra-carboxyl-ato)-κ(6) O (2),N (1),O (6);O (3),N (4),O (5)-lithium-di-μ-aqua-κ(4) O:O] 2.5-hydrate].

Wojciech Starosta1, Janusz Leciejewicz1.   

Abstract

The title coordination polymer, {[Li2(C8H2N2O8)(H2O)2]·2.5H2O} n , is built up from mol-ecular ribbons propagating in the c-axis direction of the ortho-rhom-bic unit cell; the ligand bridges two Li(+) ions using both its N,O,O'-bonding sites and adjacent Li(+) ions are bridged by pairs of water mol-ecules. The coordination geometry of the metal ion is distorted trigonal bipyramidal, with the ligand O atoms in the axial sites. Two of the carboxyl-ate groups of the ligand remain protonated and form short symmetric O-H⋯O hydrogen bonds. In the crystal, the ribbons inter-act via a network of O-H⋯O hydrogen bonds in which coordinating water mol-ecules act as donors and carboxyl-ate O atoms within adjacent ribbons act as acceptors, giving rise to a three-dimensional framework. O-H⋯N inter-actions are also observed. The asymmetric unit contains quarter of the ligand and the complete ligand has 2/m symmetry; the Li(+) ion lies on a special position with m.. site symmetry. Both bridging water mol-ecules have m2m site symmetry and both lattice water mol-ecules have m.. site symmetry; one of the latter was modelled with a site occupancy of 0.25.

Entities:  

Year:  2014        PMID: 24940214      PMCID: PMC4050999          DOI: 10.1107/S160053681401174X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of related lithium complexes with pyrazine-2,3,5,6-tetra­carboxyl­ate and water ligands, see: Starosta & Leciejewicz (2010 ▶, 2014 ▶).

Experimental

Crystal data

[Li2(C8H2N2O8)(H2O)2]·2.5H2O M = 174.53 Orthorhombic, a = 12.0554 (3) Å b = 6.39040 (17) Å c = 19.3383 (4) Å V = 1489.80 (6) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 567 K 0.24 × 0.20 × 0.05 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.701, T max = 1.000 7496 measured reflections 1151 independent reflections 997 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.07 1151 reflections 85 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S160053681401174X/hb7224sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681401174X/hb7224Isup2.hkl CCDC reference: 1004410 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Li(C8H2N2O8)(H2O)2]·2.5H2OF(000) = 716
Mr = 349.06Dx = 1.556 Mg m3
Orthorhombic, CmcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2c 2Cell parameters from 3296 reflections
a = 12.0554 (3) Åθ = 3.8–31.9°
b = 6.39040 (17) ŵ = 0.15 mm1
c = 19.3383 (4) ÅT = 293 K
V = 1489.80 (6) Å3Block, colourless
Z = 40.24 × 0.20 × 0.05 mm
Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer1151 independent reflections
Radiation source: SuperNova (Mo) X-ray Source997 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 16.0131 pixels mm-1θmax = 30.0°, θmin = 3.4°
ω scansh = −16→16
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −8→8
Tmin = 0.701, Tmax = 1.000l = −27→27
7496 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0592P)2 + 0.9014P] where P = (Fo2 + 2Fc2)/3
1151 reflections(Δ/σ)max < 0.001
85 parametersΔρmax = 0.25 e Å3
3 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.67161 (8)0.07053 (19)0.35355 (5)0.0435 (3)
O40.5000−0.1345 (3)0.25000.0388 (4)
O20.79263 (8)0.04117 (18)0.43921 (5)0.0413 (3)
O50.33035 (11)0.4166 (2)0.75000.0379 (3)
O30.50000.3004 (4)0.25000.0533 (6)
N10.50000.0321 (2)0.43101 (7)0.0270 (3)
C20.59630 (8)0.01679 (18)0.46407 (6)0.0259 (3)
C70.69421 (10)0.0441 (2)0.41465 (6)0.0310 (3)
Li10.50000.0823 (7)0.32284 (17)0.0463 (8)
H40.555 (2)−0.229 (5)0.25000.070 (9)*
H30.445 (3)0.377 (7)0.25000.097 (13)*
H50.2920 (19)0.432 (3)0.7135 (10)0.068 (7)*
H20.797 (3)0.00000.50000.097 (12)*
O60.50000.4486 (17)0.3733 (5)0.077 (2)0.25
H610.50000.578 (7)0.386 (7)0.115*0.25
H620.50000.39 (2)0.413 (4)0.115*0.25
U11U22U33U12U13U23
O10.0302 (5)0.0732 (8)0.0270 (5)−0.0022 (4)0.0051 (3)0.0037 (4)
O40.0299 (9)0.0406 (10)0.0459 (11)0.0000.0000.000
O20.0207 (4)0.0659 (7)0.0374 (5)−0.0024 (4)0.0029 (3)0.0018 (4)
O50.0240 (6)0.0562 (9)0.0334 (7)0.0024 (6)0.0000.000
O30.0336 (11)0.0356 (11)0.0908 (18)0.0000.0000.000
N10.0207 (6)0.0370 (7)0.0232 (6)0.0000.000−0.0010 (5)
C20.0198 (5)0.0335 (6)0.0244 (5)−0.0005 (4)0.0010 (4)−0.0025 (4)
C70.0226 (5)0.0410 (7)0.0295 (6)−0.0015 (4)0.0048 (4)−0.0021 (5)
Li10.0421 (18)0.070 (2)0.0271 (15)0.0000.0000.0075 (15)
O60.049 (4)0.101 (7)0.081 (5)0.0000.000−0.020 (5)
O1—C71.2242 (16)O3—Li1ii1.982 (4)
Li1—O12.1538 (13)O3—H30.82 (4)
Li1—O1i2.1538 (13)N1—C21.3289 (12)
Li1—O31.982 (4)N1—C2i1.3289 (12)
Li1—O41.976 (4)C2—C2iii1.406 (2)
Li1—N12.116 (3)C2—C71.5287 (15)
O4—Li1ii1.976 (4)Li1—O62.536 (11)
O4—H40.90 (3)Li1—Li1ii2.817 (7)
O2—C71.2780 (15)O6—H610.86 (2)
O2—H21.2057 (19)O6—H620.87 (2)
O5—H50.85 (2)
C7—O1—Li1119.00 (12)O3—Li1—O1102.74 (10)
Li1ii—O4—Li191.0 (2)N1—Li1—O173.87 (9)
Li1ii—O4—H4118.2 (11)O4—Li1—O1i99.91 (12)
Li1—O4—H4118.2 (11)O3—Li1—O1i102.74 (10)
C7—O2—H2113.8 (18)N1—Li1—O1i73.87 (9)
Li1—O3—Li1ii90.6 (3)O1—Li1—O1i147.72 (17)
Li1—O3—H3114.8 (18)O4—Li1—O6157.2 (3)
Li1ii—O3—H3114.8 (18)O3—Li1—O667.9 (3)
C2—N1—C2i121.76 (13)N1—Li1—O676.1 (3)
C2—N1—Li1119.12 (7)O1—Li1—O685.76 (13)
C2i—N1—Li1119.12 (7)O1i—Li1—O685.76 (13)
N1—C2—C2iii119.12 (7)O4—Li1—Li1ii44.52 (11)
N1—C2—C7111.44 (10)O3—Li1—Li1ii44.70 (13)
C2iii—C2—C7129.43 (6)N1—Li1—Li1ii171.28 (12)
O1—C7—O2124.56 (11)O1—Li1—Li1ii106.01 (9)
O1—C7—C2116.56 (11)O1i—Li1—Li1ii106.01 (9)
O2—C7—C2118.87 (11)O6—Li1—Li1ii112.6 (3)
O4—Li1—O389.22 (15)Li1—O6—H61174 (10)
O4—Li1—N1126.8 (2)Li1—O6—H6285 (10)
O3—Li1—N1144.0 (2)H61—O6—H62101 (3)
O4—Li1—O199.91 (12)
C2i—N1—C2—C2iii0.1 (3)Li1ii—O3—Li1—O6180.000 (2)
Li1—N1—C2—C2iii−179.94 (18)C2—N1—Li1—O490.02 (13)
C2i—N1—C2—C7−178.85 (10)C2i—N1—Li1—O4−90.02 (13)
Li1—N1—C2—C71.1 (2)C2—N1—Li1—O3−89.98 (13)
Li1—O1—C7—O2−177.66 (16)C2i—N1—Li1—O389.98 (13)
Li1—O1—C7—C21.3 (2)C2—N1—Li1—O1−0.42 (18)
N1—C2—C7—O1−1.57 (17)C2i—N1—Li1—O1179.54 (12)
C2iii—C2—C7—O1179.61 (16)C2—N1—Li1—O1i−179.55 (12)
N1—C2—C7—O2177.46 (12)C2i—N1—Li1—O1i0.42 (18)
C2iii—C2—C7—O2−1.4 (2)C2—N1—Li1—O6−89.98 (13)
Li1ii—O4—Li1—O30.0C2i—N1—Li1—O689.98 (13)
Li1ii—O4—Li1—N1180.0C2—N1—Li1—Li1ii90.02 (13)
Li1ii—O4—Li1—O1−102.80 (12)C2i—N1—Li1—Li1ii−90.02 (13)
Li1ii—O4—Li1—O1i102.80 (12)C7—O1—Li1—O4−126.14 (15)
Li1ii—O4—Li1—O60.000 (4)C7—O1—Li1—O3142.40 (14)
Li1ii—O3—Li1—O40.0C7—O1—Li1—N1−0.56 (19)
Li1ii—O3—Li1—N1180.0C7—O1—Li1—O1i1.0 (5)
Li1ii—O3—Li1—O199.99 (14)C7—O1—Li1—O676.2 (3)
Li1ii—O3—Li1—O1i−99.99 (14)C7—O1—Li1—Li1ii−171.48 (10)
D—H···AD—HH···AD···AD—H···A
O6—H62···N10.87 (2)2.28 (11)2.886 (12)127 (12)
O5—H5···O1iv0.85 (2)1.95 (2)2.7711 (13)163 (2)
O3—H3···O5v0.82 (4)1.92 (4)2.730 (2)173 (4)
O4—H4···O5vi0.90 (3)1.83 (3)2.726 (2)179 (3)
O2—H2···O2iii1.21 (1)1.21 (1)2.409 (3)175 (1)
Table 1

Selected bond lengths (Å)

Li1—O12.1538 (13)
Li1—O31.982 (4)
Li1—O41.976 (4)
Li1—N12.116 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O6—H62⋯N10.87 (2)2.28 (11)2.886 (12)127 (12)
O5—H5⋯O1i 0.85 (2)1.95 (2)2.7711 (13)163 (2)
O3—H3⋯O5ii 0.82 (4)1.92 (4)2.730 (2)173 (4)
O4—H4⋯O5iii 0.90 (3)1.83 (3)2.726 (2)179 (3)
O2—H2⋯O2iv 1.21 (1)1.21 (1)2.409 (3)175 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(3,5-dicarb-oxy-pyrazine-2,6-dicarboxyl-ato-κO,N,O)lithium(I)]-μ-aqua-[triaqua-lithium(I)]-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

3.  (μ-Di-hydrogen pyrazine-2,3,5,6-tetra-carboxyl-ato-κ(6) O (2),N (1),O (6);O (3),N (4),O (5))bis-(di-aqua-lithium) monohydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-09
  3 in total

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