Literature DB >> 21522570

Poly[di-μ-aqua-μ(4)-(pyrazine-2,5-dicarboxyl-ato)-dilithium(I)].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

In the title coordination polymer, [Li(2)(C(6)H(2)N(2)O(2))(H(2)O)(2)](n) the pyrazine-2,5-dicarboxyl-ate dianionic ligand bridges two symmetry-independent Li(+) ions using both its N,O-chelating sites. The carboxyl-ate O atom of one of them also bridges to another Li(+) ion, while the second O atom of this group is bonded to another Li(+) ion. Two symmetry-independent water O atoms participate also in the bridging system, which gives rise to a polymeric three-dimensional framework. Both Li(+) ions show distorted trigonal-bipyramidal LiNO(4) coordination geometries, with the N atom in an axial site in both cases. The packing is consolidated by O-H⋯O hydrogen bonds, which occur between water mol-ecules as donors and carboxyl-ate O atoms as acceptors.

Entities:  

Year:  2010        PMID: 21522570      PMCID: PMC3050281          DOI: 10.1107/S1600536810050762

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of transition metal complexes with the title ligand, see: Beobide et al. (2003 ▶); Xu et al. (2003 ▶); Beobide et al. (2006 ▶). For the structures of Cd and Zn complexes, see: Liu et al. (2009 ▶); Yang & Wu (2009 ▶); Yang et al. (2009 ▶). For the structures of polymeric lanthanide complexes, see: Zheng & Jin (2005 ▶); Yang et al. (2009 ▶). For the structure of a Th(IV) complex, see: Frisch & Cahill (2008 ▶). For the structure of an Sr(II) complex, see: Ptasiewicz-Bąk & Leciejewicz (1998a ▶). The structures of Li(I) complexes with pyrazine-2,3-dicarboxyl­ate and water ligands (Tombul et al., 2008 ▶), 3-amino­pyrazine-2-carboxyl­ate and water ligands (Starosta & Leciejewicz, 2010a ▶) and pyrazine-2,3,5,6-tetra­carboxyl­ate and water ligands (Starosta & Leciejewicz, 2010b ▶) have been published. For the structure of pyrazine-2,5-dicarb­oxy­lic acid dihydrate, see: Ptasiewicz-Bąk & Leciejewicz (1998b ▶); Vishweshwar et al. (2002 ▶).

Experimental

Crystal data

[Li2(C6H2N2O2)(H2O)2] M = 216.01 Monoclinic, a = 7.2107 (14) Å b = 7.3646 (15) Å c = 15.327 (3) Å β = 99.71 (3)° V = 802.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.33 × 0.17 × 0.15 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.976, T max = 0.985 2520 measured reflections 2348 independent reflections 1694 reflections with I > 2σ(I) R int = 0.069 3 standard reflections every 200 reflections intensity decay: 0.6%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.161 S = 0.99 2348 reflections 161 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.62 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050762/hb5759sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050762/hb5759Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li2(C6H2N2O2)(H2O)2]F(000) = 440
Mr = 216.01Dx = 1.788 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 7.2107 (14) Åθ = 6–15°
b = 7.3646 (15) ŵ = 0.16 mm1
c = 15.327 (3) ÅT = 293 K
β = 99.71 (3)°Plates, colourless
V = 802.2 (3) Å30.33 × 0.17 × 0.15 mm
Z = 4
Kuma KM-4 four-circle diffractometer1694 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.069
graphiteθmax = 30.1°, θmin = 2.7°
profile data from ω/2θ scansh = 0→10
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→10
Tmin = 0.976, Tmax = 0.985l = −21→21
2520 measured reflections3 standard reflections every 200 reflections
2348 independent reflections intensity decay: 0.6%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.1327P)2 + 0.0049P] where P = (Fo2 + 2Fc2)/3
2348 reflections(Δ/σ)max = 0.001
161 parametersΔρmax = 0.73 e Å3
0 restraintsΔρmin = −0.62 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O50.92850 (16)0.21032 (15)1.23861 (7)0.0235 (3)
N20.85719 (16)0.06063 (16)0.86051 (8)0.0178 (3)
O30.99726 (17)0.31016 (14)0.76139 (7)0.0248 (3)
O60.54300 (17)0.41912 (16)1.12325 (8)0.0248 (3)
N10.76024 (18)0.16459 (17)1.02138 (8)0.0194 (3)
O10.65141 (17)−0.08194 (16)1.12869 (7)0.0258 (3)
C70.69244 (18)−0.14435 (18)1.05880 (8)0.0171 (3)
C30.85787 (18)0.23438 (19)0.88494 (9)0.0167 (3)
C80.9150 (2)0.37044 (19)0.82054 (9)0.0194 (3)
O20.68766 (17)−0.30725 (14)1.03608 (7)0.0252 (3)
O40.8671 (2)0.53125 (16)0.83062 (9)0.0342 (3)
C50.80318 (19)−0.06117 (19)0.91591 (9)0.0177 (3)
H50.7990−0.18350.90060.021*
C60.75335 (17)−0.00880 (18)0.99566 (8)0.0155 (3)
C20.8103 (2)0.28635 (19)0.96561 (9)0.0202 (3)
H20.81360.40870.98080.024*
Li20.9486 (5)0.0403 (4)0.7358 (2)0.0360 (7)
Li10.6732 (4)0.1742 (4)1.1630 (2)0.0298 (6)
H510.908 (4)0.263 (4)1.284 (2)0.063 (9)*
H620.609 (4)0.503 (4)1.1012 (17)0.049 (7)*
H520.994 (4)0.294 (4)1.2126 (18)0.051 (7)*
H610.472 (5)0.375 (5)1.079 (3)0.093 (12)*
U11U22U33U12U13U23
O50.0301 (6)0.0199 (5)0.0225 (5)−0.0017 (4)0.0104 (4)−0.0037 (4)
N20.0191 (5)0.0162 (5)0.0190 (5)0.0008 (4)0.0059 (4)0.0006 (4)
O30.0301 (6)0.0227 (5)0.0246 (5)0.0010 (4)0.0137 (4)0.0013 (4)
O60.0298 (6)0.0216 (5)0.0246 (5)−0.0021 (4)0.0096 (4)0.0010 (4)
N10.0229 (6)0.0172 (6)0.0191 (5)0.0018 (4)0.0064 (4)−0.0001 (4)
O10.0365 (6)0.0212 (5)0.0230 (5)0.0003 (4)0.0148 (5)0.0015 (4)
C70.0148 (6)0.0174 (6)0.0191 (6)−0.0001 (5)0.0033 (5)0.0010 (5)
C30.0156 (6)0.0166 (6)0.0182 (6)0.0019 (4)0.0037 (5)0.0015 (4)
C80.0213 (7)0.0169 (6)0.0211 (6)0.0007 (5)0.0063 (5)0.0025 (5)
O20.0335 (6)0.0178 (5)0.0259 (5)−0.0039 (4)0.0094 (4)−0.0006 (4)
O40.0516 (8)0.0171 (5)0.0400 (7)0.0061 (5)0.0249 (6)0.0042 (5)
C50.0197 (6)0.0152 (6)0.0192 (6)−0.0008 (5)0.0057 (5)−0.0004 (4)
C60.0145 (6)0.0145 (6)0.0178 (6)0.0008 (4)0.0035 (5)0.0014 (4)
C20.0264 (7)0.0145 (6)0.0211 (6)0.0025 (5)0.0082 (5)0.0003 (5)
Li20.053 (2)0.0239 (14)0.0359 (16)−0.0019 (13)0.0218 (15)−0.0027 (11)
Li10.0305 (14)0.0250 (13)0.0332 (14)0.0005 (11)0.0033 (11)−0.0046 (11)
O5—Li2i2.056 (4)O6—H620.88 (3)
O3—Li1ii2.131 (3)O6—H610.84 (4)
O6—Li2iii1.981 (3)N1—C21.3303 (18)
O4—Li2iv2.332 (4)N1—C61.3348 (18)
Li1—O11.958 (3)O1—C71.2463 (17)
Li1—O52.020 (3)C7—O21.2481 (17)
Li1—O62.077 (3)C7—C61.5064 (18)
Li1—O3iii2.131 (3)C3—C21.3913 (18)
Li1—N12.360 (3)C3—C81.5117 (19)
Li2—O6ii1.981 (3)C8—O41.2506 (19)
Li2—O32.045 (3)C5—C61.3857 (18)
Li2—O5i2.056 (3)C5—H50.9300
Li2—O4v2.332 (4)C2—H20.9300
Li2—N22.129 (3)Li2—Li1ii2.983 (4)
O5—H510.83 (3)Li2—Li1i3.303 (5)
O5—H520.91 (3)Li1—Li2iii2.983 (4)
N2—C31.3330 (18)Li1—Li2i3.303 (5)
N2—C51.3376 (17)Li1—H612.30 (4)
O3—C81.2458 (17)
Li1—O5—Li2i108.24 (14)O3—Li2—N280.13 (12)
Li1—O5—H51105 (2)O5i—Li2—N294.63 (14)
Li2i—O5—H51113 (2)O6ii—Li2—O4v94.45 (15)
Li1—O5—H52109.1 (17)O3—Li2—O4v103.58 (15)
Li2i—O5—H52117.0 (18)O5i—Li2—O4v114.53 (15)
H51—O5—H52103 (3)N2—Li2—O4v88.10 (13)
C3—N2—C5116.94 (12)O6ii—Li2—Li1ii43.94 (9)
C3—N2—Li2109.43 (13)O3—Li2—Li1ii45.59 (9)
C5—N2—Li2133.63 (13)O5i—Li2—Li1ii117.39 (15)
C8—O3—Li2113.48 (13)N2—Li2—Li1ii123.78 (15)
C8—O3—Li1ii155.36 (13)O4v—Li2—Li1ii114.10 (14)
Li2—O3—Li1ii91.16 (13)O6ii—Li2—Li1i95.92 (14)
Li2iii—O6—Li194.61 (13)O3—Li2—Li1i105.87 (15)
Li2iii—O6—H62121.1 (18)O5i—Li2—Li1i35.51 (9)
Li1—O6—H62118.3 (19)N2—Li2—Li1i88.18 (13)
Li2iii—O6—H61120 (3)O4v—Li2—Li1i149.19 (14)
Li1—O6—H6195 (3)Li1ii—Li2—Li1i93.17 (11)
H62—O6—H61105 (3)O1—Li1—O5107.76 (15)
C2—N1—C6117.11 (12)O1—Li1—O6138.27 (17)
C2—N1—Li1135.56 (12)O5—Li1—O6112.16 (15)
C6—N1—Li1107.34 (11)O1—Li1—O3iii102.21 (15)
C7—O1—Li1124.49 (14)O5—Li1—O3iii100.41 (14)
O1—C7—O2126.51 (13)O6—Li1—O3iii82.36 (12)
O1—C7—C6116.42 (12)O1—Li1—N175.27 (11)
O2—C7—C6117.07 (12)O5—Li1—N1100.00 (14)
N2—C3—C2121.60 (12)O6—Li1—N186.19 (12)
N2—C3—C8116.19 (11)O3iii—Li1—N1159.18 (16)
C2—C3—C8122.21 (12)O1—Li1—Li2iii139.07 (16)
O3—C8—O4127.07 (13)O5—Li1—Li2iii101.09 (13)
O3—C8—C3117.04 (13)O6—Li1—Li2iii41.45 (9)
O4—C8—C3115.82 (12)O3iii—Li1—Li2iii43.25 (9)
C8—O4—Li2iv104.05 (13)N1—Li1—Li2iii127.64 (14)
N2—C5—C6121.33 (13)O1—Li1—Li2i71.81 (11)
N2—C5—H5119.3O5—Li1—Li2i36.25 (8)
C6—C5—H5119.3O6—Li1—Li2i148.18 (15)
N1—C6—C5121.63 (12)O3iii—Li1—Li2i103.68 (13)
N1—C6—C7116.40 (11)N1—Li1—Li2i95.21 (12)
C5—C6—C7121.96 (12)Li2iii—Li1—Li2i128.23 (11)
N1—C2—C3121.33 (13)O1—Li1—H61117.0 (10)
N1—C2—H2119.3O5—Li1—H61131.5 (10)
C3—C2—H2119.3O6—Li1—H6121.3 (10)
O6ii—Li2—O386.97 (13)O3iii—Li1—H6188.0 (9)
O6ii—Li2—O5i95.80 (14)N1—Li1—H6175.4 (9)
O3—Li2—O5i141.4 (2)Li2iii—Li1—H6154.9 (10)
O6ii—Li2—N2167.10 (18)Li2i—Li1—H61164.0 (10)
D—H···AD—HH···AD···AD—H···A
O6—H62···O2vi0.88 (3)1.86 (3)2.7210 (16)165 (3)
O6—H61···O2vii0.84 (4)2.00 (4)2.8351 (19)170 (4)
O5—H52···O4viii0.91 (3)1.82 (3)2.7292 (17)175 (3)
O5—H51···O1ix0.83 (3)1.87 (3)2.6842 (16)169 (3)
Table 1

Selected bond lengths (Å)

Li1—O11.958 (3)
Li1—O52.020 (3)
Li1—O62.077 (3)
Li1—O3i2.131 (3)
Li1—N12.360 (3)
Li2—O6ii1.981 (3)
Li2—O32.045 (3)
Li2—O5iii2.056 (3)
Li2—O4iv2.332 (4)
Li2—N22.129 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H62⋯O2v0.88 (3)1.86 (3)2.7210 (16)165 (3)
O6—H61⋯O2vi0.84 (4)2.00 (4)2.8351 (19)170 (4)
O5—H52⋯O4vii0.91 (3)1.82 (3)2.7292 (17)175 (3)
O5—H51⋯O1viii0.83 (3)1.87 (3)2.6842 (16)169 (3)

Symmetry codes: (v) ; (vi) ; (vii) ; (viii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular architectures and magnetic properties of coordination polymers based on pyrazinedicarboxylato ligands showing embedded water clusters.

Authors:  Garikoitz Beobide; Oscar Castillo; Antonio Luque; Urko García-Couceiro; Juan P García-Terán; Pascual Román
Journal:  Inorg Chem       Date:  2006-07-10       Impact factor: 5.165

3.  Recurrence of carboxylic acid-pyridine supramolecular synthon in the crystal structures of some pyrazinecarboxylic acids.

Authors:  Peddy Vishweshwar; Ashwini Nangia; Vincent M Lynch
Journal:  J Org Chem       Date:  2002-01-25       Impact factor: 4.354

4.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

5.  A three-dimensional pyrazine-2,5-dicarboxylate Cd(II) coordination framework with new (4,4,4)-connected three-nodal topology.

Authors:  Ping Yang; Jian Zhong Wu
Journal:  Acta Crystallogr C       Date:  2008-12-06       Impact factor: 1.172

6.  catena-Poly[[(3,5-dicarb-oxy-pyrazine-2,6-dicarboxyl-ato-κO,N,O)lithium(I)]-μ-aqua-[triaqua-lithium(I)]-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

7.  catena-Poly[[bis-(μ-3-amino-pyrazine-2-carboxyl-ato)-κN,O:O;κO:N,O)dilithium]-di-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  7 in total

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