Literature DB >> 22199521

catena-Poly[[(6-carb-oxy-pyrazine-2-carboxyl-ato)lithium]-μ-aqua].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The asymmetric unit of the title compound, [Li(C(6)H(3)N(2)O(4))(H(2)O)](n), contains an Li(I) ion with a distorted trigonal-bipyramidal coordination environment. It is chelated by a singly protonated ligand mol-ecule via its heterocyclic N atom, by two O aoms, each donated by an adjacent carboxyl-ate group, and is further coordinated by a water O atom which acts as a bridge, forming a mol-ecular ribbon. A proton attached to one of the carboxyl-ate O atoms is situated on an inversion centre and forms a short centrosymmetric hydrogen bond, generating mol-ecular layers parallel to the ac plane. These layers are held together by weak O-H⋯O hydrogen bonds in which the coordinated water mol-ecules act as donors, whereas carboxyl-ate O atoms are acceptors.

Entities:  

Year:  2011        PMID: 22199521      PMCID: PMC3238630          DOI: 10.1107/S1600536811046198

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of three lithium complexes with pyrazine-2,3-dicarboxyl­ate and water ligands, see: Tombul et al. (2008 ▶); Tombul & Guven (2009) ▶; Starosta & Leciejewicz (2011b ▶). For the structure of a LiI complex with a pyrazine-2,5-dicarboxyl­ate ligand, see: Starosta & Leciejewicz (2011a ▶) and for the structure of a LiI complex with pyrazine-2,3,5,6-tetra­carboxyl­ate, see: Starosta & Leciejewicz (2010 ▶). The structure of pyrazine-2,6-dicarboxyl­ate acid dihydrate has been also reported, see: Ptasiewicz-Bąk & Leciejewicz (2003 ▶).

Experimental

Crystal data

[Li(C6H3N2O4)(H2O)] M = 192.06 Monoclinic, a = 3.5346 (7) Å b = 12.519 (3) Å c = 8.3583 (17) Å β = 97.86 (3)° V = 366.37 (13) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.31 × 0.22 × 0.08 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.954, T max = 0.973 1262 measured reflections 1106 independent reflections 729 reflections with I > 2σ(I) R int = 0.027 3 standard reflections every 200 reflections intensity decay: 1.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.171 S = 1.09 1106 reflections 75 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.31 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811046198/kp2364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046198/kp2364Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C6H3N2O4)(H2O)]F(000) = 196
Mr = 192.06Dx = 1.741 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 25 reflections
a = 3.5346 (7) Åθ = 6–15°
b = 12.519 (3) ŵ = 0.15 mm1
c = 8.3583 (17) ÅT = 293 K
β = 97.86 (3)°Plates, colourless
V = 366.37 (13) Å30.31 × 0.22 × 0.08 mm
Z = 2
Kuma KM-4 four-circle diffractometer729 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 30.1°, θmin = 3.0°
Profile data from ω/2θ scansh = 0→4
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −17→0
Tmin = 0.954, Tmax = 0.973l = −11→11
1262 measured reflections3 standard reflections every 200 reflections
1106 independent reflections intensity decay: 1.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.1039P)2 + 0.0995P] where P = (Fo2 + 2Fc2)/3
1106 reflections(Δ/σ)max < 0.001
75 parametersΔρmax = 0.38 e Å3
2 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2901 (6)0.75000.2305 (2)0.0216 (4)
O10.4179 (5)0.57853 (10)0.07619 (15)0.0333 (4)
C20.2425 (5)0.65866 (13)0.30619 (19)0.0216 (4)
N20.0883 (7)0.75000.5385 (2)0.0297 (5)
O20.2587 (5)0.47052 (12)0.27081 (17)0.0371 (4)
C30.1409 (5)0.65888 (14)0.4618 (2)0.0269 (4)
H30.10920.59420.51300.032*
C70.3068 (5)0.55822 (14)0.2144 (2)0.0245 (4)
O30.8304 (9)0.7500−0.1306 (3)0.0572 (8)
Li10.3902 (17)0.7500−0.0132 (8)0.0456 (13)
H310.866 (12)0.6976 (8)−0.186 (4)0.092 (14)*
H10.50000.50000.00000.10 (2)*
U11U22U33U12U13U23
N10.0281 (10)0.0194 (9)0.0187 (8)0.0000.0084 (7)0.000
O10.0561 (9)0.0228 (7)0.0254 (6)0.0003 (6)0.0216 (6)−0.0014 (5)
C20.0253 (8)0.0206 (7)0.0198 (7)−0.0006 (6)0.0059 (5)0.0012 (6)
N20.0404 (12)0.0314 (12)0.0196 (9)0.0000.0124 (8)0.000
O20.0584 (10)0.0223 (7)0.0340 (7)0.0004 (6)0.0186 (6)0.0037 (5)
C30.0348 (9)0.0261 (9)0.0217 (7)0.0000 (7)0.0109 (6)0.0031 (6)
C70.0300 (8)0.0223 (7)0.0225 (7)0.0009 (6)0.0080 (6)0.0002 (6)
O30.0642 (18)0.084 (2)0.0247 (10)0.0000.0122 (10)0.000
Li10.039 (3)0.053 (3)0.046 (3)0.0000.007 (2)0.000
N1—C2i1.3287 (18)O2—C71.216 (2)
N1—C21.3287 (18)C3—H30.9300
N1—Li12.115 (7)O3—Li11.950 (7)
O1—C71.295 (2)O3—Li1ii2.085 (7)
O1—Li12.271 (2)O3—H310.825 (17)
O1—H11.2275 (13)Li1—O3iii2.085 (7)
C2—C31.396 (2)Li1—O1i2.271 (2)
C2—C71.506 (2)Li1—Li1iii3.5346 (7)
N2—C3i1.334 (2)Li1—Li1ii3.5346 (7)
N2—C31.334 (2)
C2i—N1—C2118.8 (2)O3—Li1—N1137.3 (3)
C2i—N1—Li1120.51 (10)O3iii—Li1—N1100.4 (3)
C2—N1—Li1120.51 (10)O3—Li1—O1i99.45 (16)
C7—O1—Li1118.33 (19)O3iii—Li1—O1i98.65 (16)
C7—O1—H1115.31 (13)N1—Li1—O1i71.83 (16)
Li1—O1—H1126.08 (17)O3—Li1—O199.45 (16)
N1—C2—C3120.51 (16)O3iii—Li1—O198.65 (16)
N1—C2—C7115.98 (14)N1—Li1—O171.84 (16)
C3—C2—C7123.52 (15)O1i—Li1—O1141.9 (3)
C3i—N2—C3117.5 (2)O3—Li1—Li1iii150.10 (19)
N2—C3—C2121.34 (16)O3iii—Li1—Li1iii27.79 (19)
N2—C3—H3119.3N1—Li1—Li1iii72.60 (17)
C2—C3—H3119.3O1i—Li1—Li1iii89.89 (15)
O2—C7—O1126.77 (16)O1—Li1—Li1iii89.89 (15)
O2—C7—C2121.16 (15)O3—Li1—Li1ii29.90 (19)
O1—C7—C2112.07 (15)O3iii—Li1—Li1ii152.21 (18)
Li1—O3—Li1ii122.3 (3)N1—Li1—Li1ii107.40 (17)
Li1—O3—H31119 (3)O1i—Li1—Li1ii90.11 (15)
Li1ii—O3—H3193 (3)O1—Li1—Li1ii90.11 (15)
O3—Li1—O3iii122.3 (3)Li1iii—Li1—Li1ii179.999 (1)
D—H···AD—HH···AD···AD—H···A
O3—H31···O2iv0.83 (2)2.24 (2)2.9987 (19)152 (3)
O1—H1···O1iv1.23 (1)1.23 (1)2.455 (3)180.(1)
Table 1

Selected bond lengths (Å)

N1—Li12.115 (7)
O1—Li12.271 (2)
O3—Li11.950 (7)
O3—Li1i2.085 (7)
Li1—O1ii2.271 (2)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H31⋯O2iii0.83 (2)2.24 (2)2.9987 (19)152 (3)
O1—H1⋯O1iii1.23 (1)1.23 (1)2.455 (3)180 (1)

Symmetry code: (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(aqualithium)-μ-3-carboxypyrazine-2-carboxylato-κO,N:O,N] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

3.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

4.  Poly[μ-aqua-diaqua-(μ(2)-pyrazine-2,3-dicarboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmis Guven
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

5.  catena-Poly[[(3,5-dicarb-oxy-pyrazine-2,6-dicarboxyl-ato-κO,N,O)lithium(I)]-μ-aqua-[triaqua-lithium(I)]-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  5 in total

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