Literature DB >> 21588683

2-Amino-5-chloro-pyridinium 6-oxo-1,6-dihydro-pyridine-2-carboxyl-ate 0.85-hydrate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(5)H(6)ClN(2) (+)·C(6)H(4)NO(3) (-)·0.85H(2)O, the pyridin-ium ring is planar, with a maximum deviation of 0.010 (2) Å. In the crystal structure, the cations, anions and water mol-ecules are linked via N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588683      PMCID: PMC3007856          DOI: 10.1107/S1600536810032307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of inter­molecular inter­actions, see: Braga et al. (2002 ▶); Lam & Mak (2000 ▶). For related structures, see: Hemamalini & Fun (2010a ▶,b ▶,c ▶,d ▶,e ▶,f ▶); Sawada & Ohashi (1998 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C5H6ClN2 +·C6H4NO3 −·0.85H2O M = 282.98 Orthorhombic, a = 3.8096 (1) Å b = 15.6046 (3) Å c = 20.9370 (3) Å V = 1244.65 (4) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 296 K 0.52 × 0.22 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.851, T max = 0.966 15196 measured reflections 3632 independent reflections 3129 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.113 S = 1.10 3632 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), with 1458 Fridel pairs Flack parameter: −0.04 (6) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810032307/ci5153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032307/ci5153Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6ClN2+·C6H4NO3·0.85H2OF(000) = 586
Mr = 282.98Dx = 1.510 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6806 reflections
a = 3.8096 (1) Åθ = 2.3–29.0°
b = 15.6046 (3) ŵ = 0.32 mm1
c = 20.9370 (3) ÅT = 296 K
V = 1244.65 (4) Å3Needle, green
Z = 40.52 × 0.22 × 0.11 mm
Bruker SMART APEXII CCD area-detector diffractometer3632 independent reflections
Radiation source: fine-focus sealed tube3129 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 30.1°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −4→5
Tmin = 0.851, Tmax = 0.966k = −21→21
15196 measured reflectionsl = −29→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0653P)2 + 0.0443P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
3632 reflectionsΔρmax = 0.20 e Å3
215 parametersΔρmin = −0.17 e Å3
0 restraintsAbsolute structure: Flack (1983), with 1458 Fridel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.04 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.29968 (15)0.97559 (3)1.16268 (2)0.04826 (15)
N10.0504 (4)0.98883 (9)0.97983 (7)0.0358 (3)
N20.1288 (6)0.90253 (11)0.89193 (7)0.0473 (4)
C10.0873 (5)1.00748 (10)1.04320 (8)0.0365 (4)
C20.1708 (5)0.91546 (9)0.95385 (8)0.0339 (3)
C30.3321 (6)0.85531 (10)0.99503 (8)0.0378 (4)
C40.3690 (5)0.87223 (11)1.05852 (9)0.0389 (4)
C50.2467 (5)0.95094 (10)1.08254 (7)0.0361 (4)
O10.8680 (5)0.75705 (8)0.15429 (5)0.0483 (4)
O20.6524 (5)0.96179 (8)0.31378 (6)0.0527 (4)
O30.8337 (5)0.90935 (8)0.40756 (6)0.0516 (4)
N30.8628 (4)0.82238 (9)0.25126 (6)0.0332 (3)
C60.9424 (5)0.75403 (10)0.21242 (8)0.0363 (4)
C71.1066 (5)0.68363 (11)0.24435 (9)0.0397 (4)
C81.1756 (6)0.68705 (11)0.30786 (9)0.0414 (4)
C91.0842 (6)0.75963 (12)0.34448 (8)0.0398 (4)
C100.9247 (5)0.82601 (10)0.31526 (8)0.0321 (3)
C110.7932 (6)0.90675 (10)0.34770 (7)0.0386 (4)
O1W0.5775 (11)0.18936 (16)1.01198 (10)0.1069 (12)0.85
H1W10.58880.15760.97900.101 (14)*0.85
H2W10.44010.23031.02160.109 (17)*0.85
H1−0.012 (6)1.0566 (13)1.0558 (9)0.040 (5)*
H30.416 (6)0.8069 (14)0.9779 (9)0.044 (6)*
H40.474 (6)0.8348 (12)1.0870 (8)0.032 (5)*
H81.274 (6)0.6427 (13)0.3299 (9)0.049 (6)*
H91.141 (9)0.7623 (15)0.3865 (11)0.065 (7)*
H71.155 (7)0.6344 (12)0.2193 (9)0.042 (5)*
H1N1−0.068 (6)1.0297 (13)0.9520 (10)0.046 (6)*
H1N20.222 (7)0.8578 (14)0.8740 (10)0.048 (6)*
H2N20.050 (7)0.9426 (17)0.8691 (11)0.057 (7)*
H1N30.771 (6)0.8649 (13)0.2351 (9)0.043 (6)*
U11U22U33U12U13U23
Cl10.0578 (3)0.0516 (2)0.0353 (2)−0.0024 (2)−0.0049 (2)−0.00042 (17)
N10.0431 (8)0.0311 (6)0.0331 (7)0.0030 (6)0.0011 (6)0.0030 (5)
N20.0696 (13)0.0352 (7)0.0370 (7)0.0118 (8)−0.0039 (8)−0.0020 (6)
C10.0429 (9)0.0308 (7)0.0358 (8)0.0003 (7)0.0029 (7)0.0006 (6)
C20.0368 (8)0.0298 (7)0.0352 (7)−0.0011 (7)0.0018 (8)0.0024 (6)
C30.0400 (9)0.0302 (7)0.0432 (8)0.0033 (7)−0.0002 (8)0.0020 (6)
C40.0372 (9)0.0358 (8)0.0435 (9)0.0001 (8)−0.0030 (8)0.0099 (7)
C50.0370 (9)0.0383 (8)0.0329 (7)−0.0048 (7)−0.0002 (7)0.0029 (6)
O10.0731 (10)0.0412 (6)0.0306 (5)0.0021 (7)−0.0036 (7)−0.0059 (5)
O20.0771 (11)0.0396 (6)0.0414 (6)0.0175 (7)−0.0040 (8)−0.0052 (5)
O30.0709 (10)0.0500 (7)0.0339 (6)0.0190 (8)−0.0034 (8)−0.0099 (5)
N30.0434 (8)0.0265 (6)0.0297 (6)0.0026 (6)−0.0020 (6)0.0002 (5)
C60.0427 (9)0.0324 (7)0.0338 (7)−0.0044 (7)0.0038 (8)−0.0036 (6)
C70.0440 (10)0.0321 (7)0.0429 (9)0.0048 (8)0.0060 (8)−0.0045 (7)
C80.0445 (10)0.0368 (8)0.0430 (9)0.0099 (8)0.0017 (9)0.0057 (7)
C90.0447 (10)0.0421 (8)0.0325 (8)0.0040 (8)−0.0020 (8)0.0005 (7)
C100.0330 (8)0.0334 (7)0.0300 (7)−0.0012 (7)0.0024 (7)−0.0026 (6)
C110.0466 (10)0.0357 (7)0.0335 (7)0.0030 (8)−0.0001 (8)−0.0054 (6)
O1W0.187 (4)0.0767 (15)0.0574 (12)0.013 (2)−0.0226 (18)−0.0259 (11)
Cl1—C51.7331 (16)O2—C111.237 (2)
N1—C21.348 (2)O3—C111.2633 (18)
N1—C11.365 (2)N3—C101.362 (2)
N1—H1N10.97 (2)N3—C61.375 (2)
N2—C21.322 (2)N3—H1N30.82 (2)
N2—H1N20.87 (2)C6—C71.430 (3)
N2—H2N20.84 (3)C7—C81.356 (3)
C1—C51.351 (2)C7—H70.95 (2)
C1—H10.90 (2)C8—C91.411 (3)
C2—C31.415 (2)C8—H80.91 (2)
C3—C41.363 (3)C9—C101.348 (2)
C3—H30.89 (2)C9—H90.91 (2)
C4—C51.407 (2)C10—C111.516 (2)
C4—H40.925 (19)O1W—H1W10.85
O1—C61.2506 (19)O1W—H2W10.85
C2—N1—C1122.55 (14)C10—N3—H1N3116.4 (14)
C2—N1—H1N1118.2 (12)C6—N3—H1N3118.4 (14)
C1—N1—H1N1119.3 (12)O1—C6—N3119.75 (16)
C2—N2—H1N2119.8 (15)O1—C6—C7125.67 (15)
C2—N2—H2N2119.1 (16)N3—C6—C7114.58 (15)
H1N2—N2—H2N2120 (2)C8—C7—C6120.84 (16)
C5—C1—N1119.97 (16)C8—C7—H7122.4 (12)
C5—C1—H1124.8 (12)C6—C7—H7116.7 (12)
N1—C1—H1115.1 (12)C7—C8—C9121.09 (17)
N2—C2—N1118.97 (15)C7—C8—H8123.0 (13)
N2—C2—C3123.30 (16)C9—C8—H8115.8 (13)
N1—C2—C3117.72 (15)C10—C9—C8118.78 (15)
C4—C3—C2120.72 (16)C10—C9—H9120.8 (16)
C4—C3—H3121.2 (13)C8—C9—H9120.4 (17)
C2—C3—H3118.0 (13)C9—C10—N3119.51 (15)
C3—C4—C5118.93 (16)C9—C10—C11125.75 (15)
C3—C4—H4123.4 (11)N3—C10—C11114.73 (14)
C5—C4—H4117.6 (11)O2—C11—O3126.89 (15)
C1—C5—C4120.07 (16)O2—C11—C10117.57 (14)
C1—C5—Cl1119.85 (13)O3—C11—C10115.51 (15)
C4—C5—Cl1120.09 (13)H1W1—O1W—H2W1131.4
C10—N3—C6125.17 (15)
C2—N1—C1—C5−0.7 (3)O1—C6—C7—C8−180.0 (2)
C1—N1—C2—N2−179.18 (19)N3—C6—C7—C8−0.4 (3)
C1—N1—C2—C31.8 (3)C6—C7—C8—C90.7 (3)
N2—C2—C3—C4179.8 (2)C7—C8—C9—C100.3 (3)
N1—C2—C3—C4−1.2 (3)C8—C9—C10—N3−1.5 (3)
C2—C3—C4—C5−0.5 (3)C8—C9—C10—C11176.86 (19)
N1—C1—C5—C4−1.1 (3)C6—N3—C10—C91.8 (3)
N1—C1—C5—Cl1178.92 (14)C6—N3—C10—C11−176.69 (18)
C3—C4—C5—C11.7 (3)C9—C10—C11—O2179.9 (2)
C3—C4—C5—Cl1−178.37 (16)N3—C10—C11—O2−1.7 (3)
C10—N3—C6—O1178.73 (18)C9—C10—C11—O3−1.6 (3)
C10—N3—C6—C7−0.8 (3)N3—C10—C11—O3176.80 (17)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O3i0.851.852.696 (3)174
O1W—H2W1···O1Wii0.851.992.732 (5)145
N1—H1N1···O3iii0.98 (2)1.67 (2)2.637 (2)170 (2)
N2—H1N2···O1iv0.87 (2)1.97 (2)2.823 (2)168 (2)
N2—H2N2···O2iii0.84 (3)2.04 (3)2.882 (2)179 (3)
C4—H4···O1v0.93 (2)2.39 (2)3.296 (2)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O3i0.851.852.696 (3)174
O1W—H2W1⋯O1Wii0.851.992.732 (5)145
N1—H1N1⋯O3iii0.98 (2)1.67 (2)2.637 (2)170 (2)
N2—H1N2⋯O1iv0.87 (2)1.97 (2)2.823 (2)168 (2)
N2—H2N2⋯O2iii0.84 (3)2.04 (3)2.882 (2)179 (3)
C4—H4⋯O1v0.93 (2)2.39 (2)3.296 (2)166 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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