| Literature DB >> 21588683 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the title salt, C(5)H(6)ClN(2) (+)·C(6)H(4)NO(3) (-)·0.85H(2)O, the pyridin-ium ring is planar, with a maximum deviation of 0.010 (2) Å. In the crystal structure, the cations, anions and water mol-ecules are linked via N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network.Entities:
Year: 2010 PMID: 21588683 PMCID: PMC3007856 DOI: 10.1107/S1600536810032307
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6ClN2+·C6H4NO3−·0.85H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 6806 reflections |
| θ = 2.3–29.0° | |
| µ = 0.32 mm−1 | |
| Needle, green | |
| 0.52 × 0.22 × 0.11 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 3632 independent reflections |
| Radiation source: fine-focus sealed tube | 3129 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 15196 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3632 reflections | Δρmax = 0.20 e Å−3 |
| 215 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), with 1458 Fridel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.04 (6) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Cl1 | 0.29968 (15) | 0.97559 (3) | 1.16268 (2) | 0.04826 (15) | |
| N1 | 0.0504 (4) | 0.98883 (9) | 0.97983 (7) | 0.0358 (3) | |
| N2 | 0.1288 (6) | 0.90253 (11) | 0.89193 (7) | 0.0473 (4) | |
| C1 | 0.0873 (5) | 1.00748 (10) | 1.04320 (8) | 0.0365 (4) | |
| C2 | 0.1708 (5) | 0.91546 (9) | 0.95385 (8) | 0.0339 (3) | |
| C3 | 0.3321 (6) | 0.85531 (10) | 0.99503 (8) | 0.0378 (4) | |
| C4 | 0.3690 (5) | 0.87223 (11) | 1.05852 (9) | 0.0389 (4) | |
| C5 | 0.2467 (5) | 0.95094 (10) | 1.08254 (7) | 0.0361 (4) | |
| O1 | 0.8680 (5) | 0.75705 (8) | 0.15429 (5) | 0.0483 (4) | |
| O2 | 0.6524 (5) | 0.96179 (8) | 0.31378 (6) | 0.0527 (4) | |
| O3 | 0.8337 (5) | 0.90935 (8) | 0.40756 (6) | 0.0516 (4) | |
| N3 | 0.8628 (4) | 0.82238 (9) | 0.25126 (6) | 0.0332 (3) | |
| C6 | 0.9424 (5) | 0.75403 (10) | 0.21242 (8) | 0.0363 (4) | |
| C7 | 1.1066 (5) | 0.68363 (11) | 0.24435 (9) | 0.0397 (4) | |
| C8 | 1.1756 (6) | 0.68705 (11) | 0.30786 (9) | 0.0414 (4) | |
| C9 | 1.0842 (6) | 0.75963 (12) | 0.34448 (8) | 0.0398 (4) | |
| C10 | 0.9247 (5) | 0.82601 (10) | 0.31526 (8) | 0.0321 (3) | |
| C11 | 0.7932 (6) | 0.90675 (10) | 0.34770 (7) | 0.0386 (4) | |
| O1W | 0.5775 (11) | 0.18936 (16) | 1.01198 (10) | 0.1069 (12) | 0.85 |
| H1W1 | 0.5888 | 0.1576 | 0.9790 | 0.101 (14)* | 0.85 |
| H2W1 | 0.4401 | 0.2303 | 1.0216 | 0.109 (17)* | 0.85 |
| H1 | −0.012 (6) | 1.0566 (13) | 1.0558 (9) | 0.040 (5)* | |
| H3 | 0.416 (6) | 0.8069 (14) | 0.9779 (9) | 0.044 (6)* | |
| H4 | 0.474 (6) | 0.8348 (12) | 1.0870 (8) | 0.032 (5)* | |
| H8 | 1.274 (6) | 0.6427 (13) | 0.3299 (9) | 0.049 (6)* | |
| H9 | 1.141 (9) | 0.7623 (15) | 0.3865 (11) | 0.065 (7)* | |
| H7 | 1.155 (7) | 0.6344 (12) | 0.2193 (9) | 0.042 (5)* | |
| H1N1 | −0.068 (6) | 1.0297 (13) | 0.9520 (10) | 0.046 (6)* | |
| H1N2 | 0.222 (7) | 0.8578 (14) | 0.8740 (10) | 0.048 (6)* | |
| H2N2 | 0.050 (7) | 0.9426 (17) | 0.8691 (11) | 0.057 (7)* | |
| H1N3 | 0.771 (6) | 0.8649 (13) | 0.2351 (9) | 0.043 (6)* |
| Cl1 | 0.0578 (3) | 0.0516 (2) | 0.0353 (2) | −0.0024 (2) | −0.0049 (2) | −0.00042 (17) |
| N1 | 0.0431 (8) | 0.0311 (6) | 0.0331 (7) | 0.0030 (6) | 0.0011 (6) | 0.0030 (5) |
| N2 | 0.0696 (13) | 0.0352 (7) | 0.0370 (7) | 0.0118 (8) | −0.0039 (8) | −0.0020 (6) |
| C1 | 0.0429 (9) | 0.0308 (7) | 0.0358 (8) | 0.0003 (7) | 0.0029 (7) | 0.0006 (6) |
| C2 | 0.0368 (8) | 0.0298 (7) | 0.0352 (7) | −0.0011 (7) | 0.0018 (8) | 0.0024 (6) |
| C3 | 0.0400 (9) | 0.0302 (7) | 0.0432 (8) | 0.0033 (7) | −0.0002 (8) | 0.0020 (6) |
| C4 | 0.0372 (9) | 0.0358 (8) | 0.0435 (9) | 0.0001 (8) | −0.0030 (8) | 0.0099 (7) |
| C5 | 0.0370 (9) | 0.0383 (8) | 0.0329 (7) | −0.0048 (7) | −0.0002 (7) | 0.0029 (6) |
| O1 | 0.0731 (10) | 0.0412 (6) | 0.0306 (5) | 0.0021 (7) | −0.0036 (7) | −0.0059 (5) |
| O2 | 0.0771 (11) | 0.0396 (6) | 0.0414 (6) | 0.0175 (7) | −0.0040 (8) | −0.0052 (5) |
| O3 | 0.0709 (10) | 0.0500 (7) | 0.0339 (6) | 0.0190 (8) | −0.0034 (8) | −0.0099 (5) |
| N3 | 0.0434 (8) | 0.0265 (6) | 0.0297 (6) | 0.0026 (6) | −0.0020 (6) | 0.0002 (5) |
| C6 | 0.0427 (9) | 0.0324 (7) | 0.0338 (7) | −0.0044 (7) | 0.0038 (8) | −0.0036 (6) |
| C7 | 0.0440 (10) | 0.0321 (7) | 0.0429 (9) | 0.0048 (8) | 0.0060 (8) | −0.0045 (7) |
| C8 | 0.0445 (10) | 0.0368 (8) | 0.0430 (9) | 0.0099 (8) | 0.0017 (9) | 0.0057 (7) |
| C9 | 0.0447 (10) | 0.0421 (8) | 0.0325 (8) | 0.0040 (8) | −0.0020 (8) | 0.0005 (7) |
| C10 | 0.0330 (8) | 0.0334 (7) | 0.0300 (7) | −0.0012 (7) | 0.0024 (7) | −0.0026 (6) |
| C11 | 0.0466 (10) | 0.0357 (7) | 0.0335 (7) | 0.0030 (8) | −0.0001 (8) | −0.0054 (6) |
| O1W | 0.187 (4) | 0.0767 (15) | 0.0574 (12) | 0.013 (2) | −0.0226 (18) | −0.0259 (11) |
| Cl1—C5 | 1.7331 (16) | O2—C11 | 1.237 (2) |
| N1—C2 | 1.348 (2) | O3—C11 | 1.2633 (18) |
| N1—C1 | 1.365 (2) | N3—C10 | 1.362 (2) |
| N1—H1N1 | 0.97 (2) | N3—C6 | 1.375 (2) |
| N2—C2 | 1.322 (2) | N3—H1N3 | 0.82 (2) |
| N2—H1N2 | 0.87 (2) | C6—C7 | 1.430 (3) |
| N2—H2N2 | 0.84 (3) | C7—C8 | 1.356 (3) |
| C1—C5 | 1.351 (2) | C7—H7 | 0.95 (2) |
| C1—H1 | 0.90 (2) | C8—C9 | 1.411 (3) |
| C2—C3 | 1.415 (2) | C8—H8 | 0.91 (2) |
| C3—C4 | 1.363 (3) | C9—C10 | 1.348 (2) |
| C3—H3 | 0.89 (2) | C9—H9 | 0.91 (2) |
| C4—C5 | 1.407 (2) | C10—C11 | 1.516 (2) |
| C4—H4 | 0.925 (19) | O1W—H1W1 | 0.85 |
| O1—C6 | 1.2506 (19) | O1W—H2W1 | 0.85 |
| C2—N1—C1 | 122.55 (14) | C10—N3—H1N3 | 116.4 (14) |
| C2—N1—H1N1 | 118.2 (12) | C6—N3—H1N3 | 118.4 (14) |
| C1—N1—H1N1 | 119.3 (12) | O1—C6—N3 | 119.75 (16) |
| C2—N2—H1N2 | 119.8 (15) | O1—C6—C7 | 125.67 (15) |
| C2—N2—H2N2 | 119.1 (16) | N3—C6—C7 | 114.58 (15) |
| H1N2—N2—H2N2 | 120 (2) | C8—C7—C6 | 120.84 (16) |
| C5—C1—N1 | 119.97 (16) | C8—C7—H7 | 122.4 (12) |
| C5—C1—H1 | 124.8 (12) | C6—C7—H7 | 116.7 (12) |
| N1—C1—H1 | 115.1 (12) | C7—C8—C9 | 121.09 (17) |
| N2—C2—N1 | 118.97 (15) | C7—C8—H8 | 123.0 (13) |
| N2—C2—C3 | 123.30 (16) | C9—C8—H8 | 115.8 (13) |
| N1—C2—C3 | 117.72 (15) | C10—C9—C8 | 118.78 (15) |
| C4—C3—C2 | 120.72 (16) | C10—C9—H9 | 120.8 (16) |
| C4—C3—H3 | 121.2 (13) | C8—C9—H9 | 120.4 (17) |
| C2—C3—H3 | 118.0 (13) | C9—C10—N3 | 119.51 (15) |
| C3—C4—C5 | 118.93 (16) | C9—C10—C11 | 125.75 (15) |
| C3—C4—H4 | 123.4 (11) | N3—C10—C11 | 114.73 (14) |
| C5—C4—H4 | 117.6 (11) | O2—C11—O3 | 126.89 (15) |
| C1—C5—C4 | 120.07 (16) | O2—C11—C10 | 117.57 (14) |
| C1—C5—Cl1 | 119.85 (13) | O3—C11—C10 | 115.51 (15) |
| C4—C5—Cl1 | 120.09 (13) | H1W1—O1W—H2W1 | 131.4 |
| C10—N3—C6 | 125.17 (15) | ||
| C2—N1—C1—C5 | −0.7 (3) | O1—C6—C7—C8 | −180.0 (2) |
| C1—N1—C2—N2 | −179.18 (19) | N3—C6—C7—C8 | −0.4 (3) |
| C1—N1—C2—C3 | 1.8 (3) | C6—C7—C8—C9 | 0.7 (3) |
| N2—C2—C3—C4 | 179.8 (2) | C7—C8—C9—C10 | 0.3 (3) |
| N1—C2—C3—C4 | −1.2 (3) | C8—C9—C10—N3 | −1.5 (3) |
| C2—C3—C4—C5 | −0.5 (3) | C8—C9—C10—C11 | 176.86 (19) |
| N1—C1—C5—C4 | −1.1 (3) | C6—N3—C10—C9 | 1.8 (3) |
| N1—C1—C5—Cl1 | 178.92 (14) | C6—N3—C10—C11 | −176.69 (18) |
| C3—C4—C5—C1 | 1.7 (3) | C9—C10—C11—O2 | 179.9 (2) |
| C3—C4—C5—Cl1 | −178.37 (16) | N3—C10—C11—O2 | −1.7 (3) |
| C10—N3—C6—O1 | 178.73 (18) | C9—C10—C11—O3 | −1.6 (3) |
| C10—N3—C6—C7 | −0.8 (3) | N3—C10—C11—O3 | 176.80 (17) |
| H··· | ||||
| O1W—H1W1···O3i | 0.85 | 1.85 | 2.696 (3) | 174 |
| O1W—H2W1···O1Wii | 0.85 | 1.99 | 2.732 (5) | 145 |
| N1—H1N1···O3iii | 0.98 (2) | 1.67 (2) | 2.637 (2) | 170 (2) |
| N2—H1N2···O1iv | 0.87 (2) | 1.97 (2) | 2.823 (2) | 168 (2) |
| N2—H2N2···O2iii | 0.84 (3) | 2.04 (3) | 2.882 (2) | 179 (3) |
| C4—H4···O1v | 0.93 (2) | 2.39 (2) | 3.296 (2) | 166 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.85 | 1.85 | 2.696 (3) | 174 |
| O1 | 0.85 | 1.99 | 2.732 (5) | 145 |
| N1—H1N1⋯O3iii | 0.98 (2) | 1.67 (2) | 2.637 (2) | 170 (2) |
| N2—H1N2⋯O1iv | 0.87 (2) | 1.97 (2) | 2.823 (2) | 168 (2) |
| N2—H2N2⋯O2iii | 0.84 (3) | 2.04 (3) | 2.882 (2) | 179 (3) |
| C4—H4⋯O1v | 0.93 (2) | 2.39 (2) | 3.296 (2) | 166 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .