Literature DB >> 21580345

2-Amino-5-chloro-pyridine-benzoic acid (1/1).

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title compound, C(5)H(5)ClN(2)·C(7)H(6)O(2), the carboxyl group of the benzoic acid mol-ecule is twisted away from the attached ring by 14.22 (7)°. In the crystal, the 2-amino-5-chloro-pyridine mol-ecules inter-act with the carboxyl groups of benzoic acid mol-ecules through N-H⋯O and O-H⋯N hydrogen bonds, forming cyclic R(2) (2)(8) hydrogen-bonded motifs, and linking the mol-ecules into chains parallel to the [001] direction. Neighbouring 2-amino-5-chloro-pyridine mol-ecules are also centrosymmetrically paired through C-H⋯Cl hydrogen bonds, forming another R(2) (2)(8) motif. The crystal structure is further stabilized by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21580345      PMCID: PMC2983607          DOI: 10.1107/S1600536810004447

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶); For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Lynch & Jones (2004 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H5ClN2·C7H6O2 M = 250.68 Monoclinic, a = 17.6114 (19) Å b = 5.3442 (6) Å c = 12.4774 (13) Å β = 100.161 (2)° V = 1155.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 100 K 0.55 × 0.25 × 0.07 mm

Data collection

Bruker SMART APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.844, T max = 0.979 11852 measured reflections 3331 independent reflections 2802 reflections with > 2(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.111 S = 1.12 3331 reflections 198 parameters All H-atom parameters refined Δρmax = 0.46 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004447/wn2376sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004447/wn2376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5ClN2·C7H6O2F(000) = 520
Mr = 250.68Dx = 1.440 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5100 reflections
a = 17.6114 (19) Åθ = 2.4–30.0°
b = 5.3442 (6) ŵ = 0.32 mm1
c = 12.4774 (13) ÅT = 100 K
β = 100.161 (2)°Plate, colourless
V = 1155.9 (2) Å30.55 × 0.25 × 0.07 mm
Z = 4
Bruker SMART APEX DUO CCD area-detector diffractometer3331 independent reflections
Radiation source: fine-focus sealed tube2802 reflections with > 2(I)
graphiteRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −24→24
Tmin = 0.844, Tmax = 0.979k = −7→7
11852 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111All H-atom parameters refined
S = 1.12w = 1/[σ2(Fo2) + (0.0596P)2 + 0.2767P] where P = (Fo2 + 2Fc2)/3
3331 reflections(Δ/σ)max < 0.001
198 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.029115 (18)0.29660 (7)0.17435 (3)0.02611 (11)
N10.17431 (6)−0.2004 (2)0.08617 (9)0.0197 (2)
N20.22948 (8)−0.2526 (3)−0.06737 (10)0.0270 (3)
C10.12668 (7)−0.0733 (2)0.14079 (10)0.0202 (2)
C20.08720 (7)0.1356 (2)0.09858 (10)0.0203 (2)
C30.09605 (8)0.2235 (3)−0.00426 (11)0.0232 (3)
C40.14399 (8)0.0960 (3)−0.06017 (11)0.0229 (3)
C50.18308 (7)−0.1193 (2)−0.01300 (10)0.0199 (2)
O10.30023 (6)0.33873 (19)0.06701 (7)0.0235 (2)
O20.25316 (5)0.46305 (18)0.21358 (7)0.0202 (2)
C60.35843 (7)0.1449 (3)0.34708 (10)0.0194 (2)
C70.40642 (7)−0.0304 (3)0.40807 (10)0.0226 (3)
C80.44122 (8)−0.2180 (3)0.35634 (12)0.0232 (3)
C90.42870 (8)−0.2295 (3)0.24289 (12)0.0227 (3)
C100.38163 (7)−0.0544 (2)0.18193 (10)0.0202 (2)
C110.34623 (7)0.1339 (2)0.23375 (10)0.0170 (2)
C120.29775 (7)0.3214 (2)0.16423 (10)0.0173 (2)
H10.1213 (10)−0.132 (3)0.2126 (14)0.028 (4)*
H30.0695 (11)0.375 (4)−0.0377 (16)0.040 (5)*
H40.1539 (10)0.154 (4)−0.1271 (15)0.032 (5)*
H60.3370 (10)0.270 (4)0.3810 (14)0.026 (4)*
H70.4150 (10)−0.018 (4)0.4848 (14)0.032 (5)*
H80.4762 (10)−0.344 (3)0.4016 (14)0.026 (4)*
H90.4506 (10)−0.362 (3)0.2061 (14)0.029 (4)*
H100.3722 (9)−0.058 (3)0.1028 (13)0.024 (4)*
H1O20.2262 (13)0.590 (5)0.1647 (19)0.061 (7)*
H1N20.2563 (11)−0.378 (4)−0.0353 (16)0.039 (5)*
H2N20.2443 (11)−0.186 (4)−0.1250 (16)0.033 (5)*
U11U22U33U12U13U23
Cl10.02624 (17)0.02425 (18)0.02760 (18)0.00709 (12)0.00407 (12)0.00036 (12)
N10.0220 (5)0.0181 (5)0.0187 (5)0.0018 (4)0.0026 (4)0.0026 (4)
N20.0345 (6)0.0266 (6)0.0217 (5)0.0075 (5)0.0096 (5)0.0059 (5)
C10.0208 (5)0.0187 (6)0.0208 (6)0.0005 (5)0.0025 (4)0.0021 (5)
C20.0185 (5)0.0186 (6)0.0228 (6)0.0008 (5)0.0011 (4)−0.0009 (5)
C30.0232 (6)0.0200 (6)0.0240 (6)0.0016 (5)−0.0028 (5)0.0040 (5)
C40.0249 (6)0.0229 (6)0.0193 (6)0.0005 (5)−0.0006 (5)0.0049 (5)
C50.0208 (5)0.0189 (6)0.0193 (5)−0.0018 (5)0.0012 (4)0.0010 (5)
O10.0320 (5)0.0243 (5)0.0148 (4)0.0045 (4)0.0059 (3)0.0020 (4)
O20.0225 (4)0.0211 (4)0.0178 (4)0.0043 (4)0.0055 (3)0.0031 (4)
C60.0207 (5)0.0203 (6)0.0182 (5)0.0006 (5)0.0063 (4)0.0022 (5)
C70.0219 (6)0.0267 (7)0.0191 (6)0.0010 (5)0.0037 (4)0.0056 (5)
C80.0197 (6)0.0206 (6)0.0291 (7)0.0010 (5)0.0034 (5)0.0065 (5)
C90.0210 (6)0.0182 (6)0.0289 (7)0.0010 (5)0.0044 (5)−0.0018 (5)
C100.0210 (5)0.0195 (6)0.0200 (5)−0.0013 (5)0.0033 (4)−0.0026 (5)
C110.0165 (5)0.0158 (5)0.0187 (5)−0.0029 (4)0.0030 (4)0.0015 (4)
C120.0179 (5)0.0167 (6)0.0172 (5)−0.0025 (4)0.0027 (4)0.0001 (4)
Cl1—C21.7382 (13)O2—C121.3190 (15)
N1—C51.3454 (16)O2—H1O20.98 (2)
N1—C11.3532 (17)C6—C111.3936 (17)
N2—C51.3530 (18)C6—C71.3946 (18)
N2—H1N20.88 (2)C6—H60.907 (18)
N2—H2N20.881 (19)C7—C81.392 (2)
C1—C21.3705 (18)C7—H70.945 (17)
C1—H10.970 (18)C8—C91.395 (2)
C2—C31.4006 (19)C8—H81.015 (18)
C3—C41.368 (2)C9—C101.3854 (19)
C3—H30.99 (2)C9—H90.962 (18)
C4—C51.4149 (18)C10—C111.4005 (18)
C4—H40.936 (18)C10—H100.972 (16)
O1—C121.2250 (15)C11—C121.4913 (17)
C5—N1—C1118.92 (11)C11—C6—H6120.1 (11)
C5—N2—H1N2120.0 (13)C7—C6—H6120.1 (11)
C5—N2—H2N2119.3 (13)C8—C7—C6120.33 (12)
H1N2—N2—H2N2117.8 (18)C8—C7—H7120.9 (11)
N1—C1—C2122.21 (12)C6—C7—H7118.7 (11)
N1—C1—H1118.2 (11)C7—C8—C9119.92 (12)
C2—C1—H1119.5 (11)C7—C8—H8119.6 (10)
C1—C2—C3119.61 (12)C9—C8—H8120.5 (10)
C1—C2—Cl1120.10 (10)C10—C9—C8119.96 (12)
C3—C2—Cl1120.25 (10)C10—C9—H9119.2 (11)
C4—C3—C2118.61 (12)C8—C9—H9120.8 (11)
C4—C3—H3118.7 (11)C9—C10—C11120.26 (12)
C2—C3—H3122.6 (11)C9—C10—H10121.5 (10)
C3—C4—C5119.45 (12)C11—C10—H10118.3 (10)
C3—C4—H4121.2 (11)C6—C11—C10119.82 (12)
C5—C4—H4119.3 (11)C6—C11—C12122.12 (11)
N1—C5—N2117.98 (12)C10—C11—C12118.04 (11)
N1—C5—C4121.20 (12)O1—C12—O2123.17 (11)
N2—C5—C4120.81 (12)O1—C12—C11120.66 (11)
C12—O2—H1O2111.7 (14)O2—C12—C11116.17 (10)
C11—C6—C7119.69 (12)
C5—N1—C1—C2−0.16 (19)C6—C7—C8—C90.6 (2)
N1—C1—C2—C3−0.2 (2)C7—C8—C9—C100.0 (2)
N1—C1—C2—Cl1−178.03 (10)C8—C9—C10—C11−0.3 (2)
C1—C2—C3—C40.34 (19)C7—C6—C11—C100.60 (19)
Cl1—C2—C3—C4178.12 (10)C7—C6—C11—C12−177.84 (11)
C2—C3—C4—C5−0.04 (19)C9—C10—C11—C6−0.01 (19)
C1—N1—C5—N2−178.39 (12)C9—C10—C11—C12178.49 (11)
C1—N1—C5—C40.47 (19)C6—C11—C12—O1165.21 (12)
C3—C4—C5—N1−0.37 (19)C10—C11—C12—O1−13.25 (18)
C3—C4—C5—N2178.46 (13)C6—C11—C12—O2−14.87 (17)
C11—C6—C7—C8−0.9 (2)C10—C11—C12—O2166.67 (11)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···N1i0.98 (2)1.65 (2)2.629 (1)175 (2)
N2—H1N2···O1ii0.88 (2)2.04 (2)2.898 (2)165.4 (18)
N2—H2N2···O2iii0.88 (2)2.37 (2)3.231 (2)165.8 (17)
C3—H3···Cl1iv0.99 (2)2.82 (2)3.780 (2)163.4 (16)
C6—H6···O1v0.91 (2)2.58 (2)3.095 (2)116.3 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯N1i0.98 (2)1.65 (2)2.629 (1)175 (2)
N2—H1N2⋯O1ii0.88 (2)2.04 (2)2.898 (2)165.4 (18)
N2—H2N2⋯O2iii0.88 (2)2.37 (2)3.231 (2)165.8 (17)
C3—H3⋯Cl1iv0.99 (2)2.82 (2)3.780 (2)163.4 (16)
C6—H6⋯O1v0.91 (2)2.58 (2)3.095 (2)116.3 (15)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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