| Literature DB >> 21579495 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
The asymmetric unit of the title compound, C(5)H(5)ClN(2)·0.5C(4)H(4)O(4), comprises a neutral 2-amino-5-chloro-pyridine mol-ecule and one half of a fumaric acid mol-ecule which lies on an inversion center. The dihedral angle between the pyridine ring and the plane formed by the fumaric acid mol-ecule is 3.22 (8)°. The 2-amino-5-chloro-pyridine mol-ecule is planar, with a maximum deviation of 0.004 (1) Å for the pyridine N atom. In the crystal, the 2-amino-5-chloro-pyridine mol-ecules inter-act with the carboxyl groups of fumaric acid mol-ecules through N-H⋯O and O-H⋯N hydrogen bonds, forming centrosymmetric R(2) (2)(8) ring motifs and another N-H⋯O hydrogen bond links these motifs into a two-dimensional network parallel to (100).Entities:
Year: 2010 PMID: 21579495 PMCID: PMC2979350 DOI: 10.1107/S1600536810018192
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H5ClN2·0.5C4H4O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3958 reflections |
| θ = 3.6–36.5° | |
| µ = 0.45 mm−1 | |
| β = 103.442 (7)° | Plate, colourless |
| 0.57 × 0.25 × 0.08 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 2771 independent reflections |
| Radiation source: fine-focus sealed tube | 2420 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 3.6° |
| Absorption correction: multi-scan ( | |
| 8439 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2771 reflections | (Δ/σ)max = 0.001 |
| 110 parameters | Δρmax = 0.70 e Å−3 |
| 0 restraints | Δρmin = −0.59 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.03621 (3) | −0.27603 (7) | 0.40770 (3) | 0.01778 (13) | |
| N1 | 0.25244 (9) | 0.1952 (2) | 0.34964 (11) | 0.0130 (2) | |
| N2 | 0.34626 (11) | 0.2094 (3) | 0.20667 (12) | 0.0182 (3) | |
| H2A | 0.3772 | 0.3457 | 0.2420 | 0.022* | |
| H2B | 0.3615 | 0.1481 | 0.1436 | 0.022* | |
| C1 | 0.17992 (10) | 0.0834 (3) | 0.39610 (12) | 0.0133 (2) | |
| H1A | 0.1661 | 0.1550 | 0.4648 | 0.016* | |
| C2 | 0.12664 (10) | −0.1319 (3) | 0.34452 (12) | 0.0133 (2) | |
| C3 | 0.14697 (11) | −0.2407 (3) | 0.24014 (13) | 0.0149 (3) | |
| H3A | 0.1109 | −0.3861 | 0.2037 | 0.018* | |
| C4 | 0.22039 (11) | −0.1301 (3) | 0.19295 (12) | 0.0153 (3) | |
| H4A | 0.2349 | −0.2000 | 0.1242 | 0.018* | |
| C5 | 0.27436 (10) | 0.0926 (3) | 0.24997 (12) | 0.0133 (2) | |
| O1 | 0.44882 (8) | 0.6317 (2) | 0.34908 (10) | 0.0177 (2) | |
| O2 | 0.34481 (8) | 0.5851 (2) | 0.47334 (9) | 0.0143 (2) | |
| H2 | 0.3331 | 0.4402 | 0.4412 | 0.022* | |
| C6 | 0.41907 (10) | 0.6973 (3) | 0.43840 (12) | 0.0127 (2) | |
| C7 | 0.46749 (10) | 0.9183 (3) | 0.51670 (12) | 0.0138 (2) | |
| H7A | 0.4520 | 0.9427 | 0.5904 | 0.017* |
| Cl1 | 0.01527 (19) | 0.01894 (19) | 0.0195 (2) | −0.00319 (10) | 0.00484 (13) | 0.00275 (11) |
| N1 | 0.0146 (5) | 0.0132 (5) | 0.0113 (5) | −0.0018 (4) | 0.0033 (4) | −0.0012 (4) |
| N2 | 0.0230 (6) | 0.0172 (6) | 0.0176 (6) | −0.0049 (4) | 0.0111 (5) | −0.0033 (4) |
| C1 | 0.0145 (6) | 0.0146 (5) | 0.0112 (5) | −0.0013 (4) | 0.0036 (4) | −0.0002 (4) |
| C2 | 0.0125 (5) | 0.0142 (6) | 0.0127 (5) | −0.0013 (4) | 0.0021 (4) | 0.0015 (4) |
| C3 | 0.0157 (6) | 0.0144 (5) | 0.0133 (6) | −0.0021 (4) | 0.0008 (5) | −0.0012 (4) |
| C4 | 0.0189 (6) | 0.0148 (6) | 0.0121 (5) | −0.0006 (4) | 0.0035 (4) | −0.0020 (4) |
| C5 | 0.0157 (6) | 0.0131 (5) | 0.0109 (5) | 0.0001 (4) | 0.0029 (4) | −0.0004 (4) |
| O1 | 0.0197 (5) | 0.0184 (5) | 0.0175 (5) | −0.0051 (4) | 0.0089 (4) | −0.0060 (4) |
| O2 | 0.0155 (5) | 0.0153 (4) | 0.0130 (4) | −0.0039 (3) | 0.0049 (4) | −0.0023 (3) |
| C6 | 0.0120 (5) | 0.0124 (5) | 0.0133 (6) | −0.0001 (4) | 0.0021 (4) | −0.0007 (4) |
| C7 | 0.0144 (6) | 0.0135 (5) | 0.0133 (6) | −0.0011 (4) | 0.0030 (4) | −0.0028 (4) |
| Cl1—C2 | 1.7352 (14) | C3—H3A | 0.9300 |
| N1—C1 | 1.3555 (17) | C4—C5 | 1.422 (2) |
| N1—C5 | 1.3565 (17) | C4—H4A | 0.9300 |
| N2—C5 | 1.3393 (18) | O1—C6 | 1.2375 (17) |
| N2—H2A | 0.8600 | O2—C6 | 1.3061 (16) |
| N2—H2B | 0.8600 | O2—H2 | 0.8200 |
| C1—C2 | 1.3675 (19) | C6—C7 | 1.4920 (19) |
| C1—H1A | 0.9300 | C7—C7i | 1.335 (3) |
| C2—C3 | 1.409 (2) | C7—H7A | 0.9300 |
| C3—C4 | 1.368 (2) | ||
| C1—N1—C5 | 120.10 (12) | C3—C4—C5 | 119.37 (13) |
| C5—N2—H2A | 120.0 | C3—C4—H4A | 120.3 |
| C5—N2—H2B | 120.0 | C5—C4—H4A | 120.3 |
| H2A—N2—H2B | 120.0 | N2—C5—N1 | 118.25 (13) |
| N1—C1—C2 | 121.69 (12) | N2—C5—C4 | 121.64 (13) |
| N1—C1—H1A | 119.2 | N1—C5—C4 | 120.10 (12) |
| C2—C1—H1A | 119.2 | C6—O2—H2 | 109.5 |
| C1—C2—C3 | 119.45 (12) | O1—C6—O2 | 124.75 (13) |
| C1—C2—Cl1 | 120.79 (11) | O1—C6—C7 | 121.27 (12) |
| C3—C2—Cl1 | 119.76 (11) | O2—C6—C7 | 113.98 (12) |
| C4—C3—C2 | 119.29 (13) | C7i—C7—C6 | 121.41 (16) |
| C4—C3—H3A | 120.4 | C7i—C7—H7A | 119.3 |
| C2—C3—H3A | 120.4 | C6—C7—H7A | 119.3 |
| C5—N1—C1—C2 | −0.5 (2) | C1—N1—C5—N2 | 179.77 (13) |
| N1—C1—C2—C3 | −0.3 (2) | C1—N1—C5—C4 | 0.9 (2) |
| N1—C1—C2—Cl1 | 178.49 (11) | C3—C4—C5—N2 | −179.38 (14) |
| C1—C2—C3—C4 | 0.6 (2) | C3—C4—C5—N1 | −0.5 (2) |
| Cl1—C2—C3—C4 | −178.16 (11) | O1—C6—C7—C7i | 11.5 (3) |
| C2—C3—C4—C5 | −0.2 (2) | O2—C6—C7—C7i | −168.52 (17) |
| H··· | ||||
| O2—H2···N1 | 0.82 | 1.82 | 2.5852 (17) | 154 |
| N2—H2A···O1 | 0.86 | 2.00 | 2.856 (2) | 171 |
| N2—H2B···O2ii | 0.86 | 2.26 | 3.0718 (18) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N1 | 0.82 | 1.82 | 2.5852 (17) | 154 |
| N2—H2 | 0.86 | 2.00 | 2.856 (2) | 171 |
| N2—H2 | 0.86 | 2.26 | 3.0718 (18) | 158 |
Symmetry code: (i) .