Literature DB >> 21580326

2-Amino-5-chloro-pyridinium 4-hydroxy-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(5)H(6)ClN(2) (+)·C(7)H(5)O(3) (-), the carboxyl-ate mean plane of the 4-hydroxy-benzoate anion is twisted by 7.16 (9)° from the attached ring. In the crystal structure, the cations and anions are linked via O-H⋯O and N-H⋯O hydrogen bonds, as well as C-H⋯O contacts, forming a three-dimensional network. In addition, weak π-π inter-actions involving the benzene and pyridinium rings, with centroid-to-centroid distances of 3.8941 (9) Å, are observed.

Entities:  

Year:  2010        PMID: 21580326      PMCID: PMC2983740          DOI: 10.1107/S1600536810004265

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For related structures, see: Pourayoubi et al. (2007 ▶); Akriche & Rzaigui (2005 ▶); Janczak & Perpétuo (2009 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H6ClN2C7H5O3 M = 266.68 Monoclinic, a = 10.0893 (3) Å b = 11.7612 (4) Å c = 11.6634 (3) Å β = 116.113 (2)° V = 1242.74 (6) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 100 K 0.69 × 0.20 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.814, T max = 0.958 12446 measured reflections 3630 independent reflections 2663 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 1.04 3630 reflections 207 parameters All H-atom parameters refined Δρmax = 0.22 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004265/tk2625sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004265/tk2625Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6ClN2+·C7H5O3F(000) = 552
Mr = 266.68Dx = 1.425 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4875 reflections
a = 10.0893 (3) Åθ = 2.3–29.9°
b = 11.7612 (4) ŵ = 0.31 mm1
c = 11.6634 (3) ÅT = 100 K
β = 116.113 (2)°Block, colourless
V = 1242.74 (6) Å30.69 × 0.20 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3630 independent reflections
Radiation source: fine-focus sealed tube2663 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 30.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→14
Tmin = 0.814, Tmax = 0.958k = −16→16
12446 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0478P)2 + 0.2067P] where P = (Fo2 + 2Fc2)/3
3630 reflections(Δ/σ)max < 0.001
207 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) k.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.21064 (4)0.98776 (4)−0.17272 (4)0.06226 (15)
N10.51321 (13)0.78671 (10)0.07645 (11)0.0444 (3)
N20.63089 (16)0.77385 (14)0.29586 (13)0.0574 (3)
C10.53134 (15)0.82441 (12)0.19187 (13)0.0439 (3)
C20.44186 (16)0.91497 (14)0.19530 (14)0.0510 (4)
C30.34358 (17)0.96337 (14)0.08507 (15)0.0512 (4)
C40.33162 (14)0.92372 (13)−0.03259 (13)0.0454 (3)
C50.41534 (15)0.83516 (13)−0.03444 (13)0.0454 (3)
O10.00092 (13)0.66336 (10)0.45630 (11)0.0579 (3)
O20.34526 (13)1.11961 (9)0.47186 (9)0.0567 (3)
O30.22698 (11)1.09176 (8)0.26301 (8)0.0463 (2)
C60.21056 (18)0.92410 (14)0.51840 (13)0.0531 (4)
C70.14592 (19)0.82697 (15)0.53591 (13)0.0563 (4)
C80.06192 (15)0.75826 (12)0.43312 (13)0.0438 (3)
C90.04555 (15)0.78713 (12)0.31209 (12)0.0426 (3)
C100.11107 (14)0.88452 (12)0.29507 (12)0.0397 (3)
C110.19355 (14)0.95522 (12)0.39715 (11)0.0392 (3)
C120.25875 (14)1.06243 (12)0.37582 (12)0.0398 (3)
H2A0.4538 (17)0.9382 (14)0.2769 (16)0.059 (5)*
H3A0.283 (2)1.0251 (15)0.0866 (17)0.064 (5)*
H5A0.4139 (17)0.8021 (14)−0.1096 (16)0.060 (5)*
H6A0.2676 (19)0.9721 (15)0.5889 (17)0.065 (5)*
H7A0.1571 (19)0.8087 (16)0.6168 (18)0.068 (5)*
H9A−0.0099 (17)0.7369 (13)0.2417 (15)0.054 (4)*
H10A0.1007 (16)0.9043 (13)0.2125 (15)0.048 (4)*
H1O1−0.053 (2)0.6331 (17)0.386 (2)0.073 (6)*
H1N10.575 (2)0.7250 (16)0.0689 (18)0.076 (6)*
H1N20.6509 (19)0.8050 (16)0.3681 (18)0.062 (5)*
H2N20.689 (2)0.7177 (19)0.2877 (19)0.080 (6)*
U11U22U33U12U13U23
Cl10.0607 (2)0.0623 (3)0.0572 (2)0.00938 (18)0.01990 (18)0.00670 (19)
N10.0523 (6)0.0433 (6)0.0410 (6)0.0039 (5)0.0235 (5)−0.0053 (5)
N20.0729 (8)0.0590 (9)0.0403 (6)0.0110 (7)0.0249 (6)−0.0023 (6)
C10.0515 (7)0.0438 (7)0.0425 (6)−0.0042 (6)0.0262 (6)−0.0069 (6)
C20.0587 (8)0.0536 (9)0.0476 (7)0.0000 (7)0.0297 (6)−0.0132 (7)
C30.0528 (7)0.0479 (9)0.0585 (8)0.0037 (7)0.0297 (7)−0.0092 (7)
C40.0441 (6)0.0451 (8)0.0475 (7)−0.0022 (6)0.0206 (5)−0.0043 (6)
C50.0504 (7)0.0467 (8)0.0416 (7)0.0000 (6)0.0226 (6)−0.0071 (6)
O10.0716 (7)0.0539 (7)0.0450 (5)−0.0210 (6)0.0228 (5)0.0014 (5)
O20.0799 (7)0.0531 (6)0.0401 (5)−0.0245 (5)0.0291 (5)−0.0082 (5)
O30.0597 (5)0.0440 (5)0.0370 (4)0.0000 (4)0.0229 (4)0.0042 (4)
C60.0709 (9)0.0536 (9)0.0333 (6)−0.0166 (8)0.0217 (6)−0.0052 (6)
C70.0763 (10)0.0591 (10)0.0347 (6)−0.0180 (8)0.0256 (7)0.0003 (7)
C80.0486 (7)0.0423 (7)0.0406 (6)−0.0039 (6)0.0197 (5)0.0024 (6)
C90.0485 (6)0.0418 (7)0.0345 (6)−0.0032 (6)0.0155 (5)−0.0028 (6)
C100.0466 (6)0.0403 (7)0.0329 (6)0.0027 (6)0.0181 (5)0.0014 (5)
C110.0459 (6)0.0384 (7)0.0348 (6)0.0000 (5)0.0192 (5)−0.0001 (5)
C120.0480 (6)0.0380 (7)0.0372 (6)0.0018 (6)0.0224 (5)−0.0011 (5)
Cl1—C41.7241 (15)O1—H1O10.83 (2)
N1—C11.3511 (17)O2—C121.2682 (15)
N1—C51.3595 (18)O3—C121.2577 (15)
N1—H1N10.99 (2)C6—C71.375 (2)
N2—C11.3271 (19)C6—C111.3963 (18)
N2—H1N20.858 (19)C6—H6A0.954 (18)
N2—H2N20.91 (2)C7—C81.384 (2)
C1—C21.408 (2)C7—H7A0.925 (19)
C2—C31.356 (2)C8—C91.3892 (19)
C2—H2A0.946 (16)C9—C101.3798 (19)
C3—C41.403 (2)C9—H9A0.965 (16)
C3—H3A0.953 (18)C10—C111.3889 (18)
C4—C51.347 (2)C10—H10A0.950 (15)
C5—H5A0.953 (17)C11—C121.4929 (19)
O1—C81.3581 (17)
C1—N1—C5122.24 (12)C7—C6—C11120.90 (13)
C1—N1—H1N1121.1 (11)C7—C6—H6A120.6 (11)
C5—N1—H1N1116.5 (11)C11—C6—H6A118.5 (11)
C1—N2—H1N2117.6 (12)C6—C7—C8120.42 (13)
C1—N2—H2N2119.3 (13)C6—C7—H7A119.5 (11)
H1N2—N2—H2N2121.8 (18)C8—C7—H7A120.1 (11)
N2—C1—N1118.66 (13)O1—C8—C7117.77 (12)
N2—C1—C2123.35 (13)O1—C8—C9122.79 (12)
N1—C1—C2117.98 (13)C7—C8—C9119.43 (13)
C3—C2—C1120.07 (13)C10—C9—C8119.92 (12)
C3—C2—H2A123.3 (10)C10—C9—H9A121.4 (10)
C1—C2—H2A116.6 (10)C8—C9—H9A118.7 (10)
C2—C3—C4120.00 (14)C9—C10—C11121.19 (12)
C2—C3—H3A120.6 (11)C9—C10—H10A120.2 (9)
C4—C3—H3A119.4 (11)C11—C10—H10A118.7 (9)
C5—C4—C3119.20 (13)C10—C11—C6118.13 (13)
C5—C4—Cl1120.66 (11)C10—C11—C12120.30 (11)
C3—C4—Cl1120.14 (11)C6—C11—C12121.56 (12)
C4—C5—N1120.45 (13)O3—C12—O2122.55 (12)
C4—C5—H5A125.1 (10)O3—C12—C11118.55 (11)
N1—C5—H5A114.5 (10)O2—C12—C11118.89 (11)
C8—O1—H1O1108.3 (14)
C5—N1—C1—N2−178.89 (13)C6—C7—C8—C91.2 (2)
C5—N1—C1—C21.8 (2)O1—C8—C9—C10−179.65 (13)
N2—C1—C2—C3179.25 (15)C7—C8—C9—C10−0.9 (2)
N1—C1—C2—C3−1.5 (2)C8—C9—C10—C11−0.2 (2)
C1—C2—C3—C4−0.4 (2)C9—C10—C11—C61.0 (2)
C2—C3—C4—C52.1 (2)C9—C10—C11—C12−177.69 (12)
C2—C3—C4—Cl1−178.10 (12)C7—C6—C11—C10−0.8 (2)
C3—C4—C5—N1−1.8 (2)C7—C6—C11—C12177.90 (15)
Cl1—C4—C5—N1178.38 (11)C10—C11—C12—O35.95 (19)
C1—N1—C5—C4−0.2 (2)C6—C11—C12—O3−172.73 (13)
C11—C6—C7—C8−0.3 (3)C10—C11—C12—O2−173.19 (12)
C6—C7—C8—O1179.94 (15)C6—C11—C12—O28.1 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O3i0.84 (2)1.91 (2)2.7132 (15)160 (2)
N1—H1N1···O2ii0.99 (2)1.66 (2)2.6320 (18)169.2 (18)
N2—H1N2···O2iii0.857 (19)2.051 (19)2.8972 (18)169 (2)
N2—H2N2···O3ii0.92 (2)1.93 (2)2.825 (2)167 (2)
C3—H3A···O30.95 (2)2.488 (19)3.181 (2)129.5 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O3i0.84 (2)1.91 (2)2.7132 (15)160 (2)
N1—H1N1⋯O2ii0.99 (2)1.66 (2)2.6320 (18)169.2 (18)
N2—H1N2⋯O2iii0.857 (19)2.051 (19)2.8972 (18)169 (2)
N2—H2N2⋯O3ii0.92 (2)1.93 (2)2.825 (2)167 (2)
C3—H3A⋯O30.95 (2)2.488 (19)3.181 (2)129.5 (14)

Symmetry codes: (i) ; (ii) ; (iii) .

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