| Literature DB >> 21588612 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the crystal structure of the title salt, C(5)H(6)BrN(2) (+)·C(6)H(4)NO(3) (-)·H(2)O, the protonated N atom and the 2-amino group of the cation areEntities:
Year: 2010 PMID: 21588612 PMCID: PMC3008071 DOI: 10.1107/S1600536810030916
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6BrN2+·C6H4NO3−·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 4297 reflections |
| θ = 2.6–27.5° | |
| µ = 3.23 mm−1 | |
| Block, colourless | |
| 0.35 × 0.18 × 0.12 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 3718 independent reflections |
| Radiation source: fine-focus sealed tube | 3105 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 8884 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3718 reflections | Δρmax = 0.37 e Å−3 |
| 172 parameters | Δρmin = −0.32 e Å−3 |
| 3 restraints | Absolute structure: Flack (1983), 1482 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.011 (12) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.68523 (9) | 0.02155 (2) | 0.832419 (15) | 0.04315 (11) | |
| N1 | 0.9529 (7) | 0.01356 (17) | 1.02199 (12) | 0.0358 (5) | |
| H1B | 1.0573 | −0.0221 | 1.0463 | 0.043* | |
| N2 | 0.8795 (10) | 0.09857 (18) | 1.10959 (13) | 0.0490 (8) | |
| H2A | 0.9800 | 0.0609 | 1.1327 | 0.059* | |
| H2B | 0.8067 | 0.1446 | 1.1268 | 0.059* | |
| C1 | 0.9123 (9) | −0.00566 (19) | 0.95935 (15) | 0.0357 (7) | |
| H1A | 0.9939 | −0.0570 | 0.9437 | 0.043* | |
| C2 | 0.7526 (7) | 0.04972 (19) | 0.91899 (14) | 0.0347 (7) | |
| C3 | 0.6342 (9) | 0.1270 (2) | 0.94344 (16) | 0.0408 (7) | |
| H3A | 0.5271 | 0.1657 | 0.9164 | 0.049* | |
| C4 | 0.6750 (10) | 0.14591 (18) | 1.00655 (15) | 0.0384 (7) | |
| H4A | 0.5981 | 0.1974 | 1.0227 | 0.046* | |
| C5 | 0.8371 (10) | 0.08579 (19) | 1.04763 (14) | 0.0363 (6) | |
| O1 | 0.1449 (9) | 0.24380 (15) | 0.84486 (11) | 0.0517 (7) | |
| O2 | 0.1646 (8) | 0.08864 (15) | 0.59255 (11) | 0.0525 (6) | |
| O3 | 0.3456 (8) | 0.03807 (15) | 0.68650 (11) | 0.0529 (7) | |
| N3 | 0.1458 (8) | 0.17784 (15) | 0.74829 (11) | 0.0337 (5) | |
| H3B | 0.2465 | 0.1354 | 0.7660 | 0.040* | |
| C6 | 0.0674 (9) | 0.24462 (19) | 0.78634 (16) | 0.0374 (7) | |
| C7 | −0.0997 (9) | 0.3135 (2) | 0.75378 (17) | 0.0427 (8) | |
| H7A | −0.1583 | 0.3621 | 0.7764 | 0.051* | |
| C8 | −0.1722 (11) | 0.3084 (2) | 0.69074 (17) | 0.0438 (7) | |
| H8A | −0.2841 | 0.3532 | 0.6708 | 0.053* | |
| C9 | −0.0818 (10) | 0.2363 (2) | 0.65430 (15) | 0.0398 (7) | |
| H9A | −0.1321 | 0.2333 | 0.6108 | 0.048* | |
| C10 | 0.0787 (9) | 0.1721 (2) | 0.68434 (14) | 0.0351 (7) | |
| C11 | 0.2065 (10) | 0.09186 (19) | 0.65253 (14) | 0.0378 (7) | |
| O1W | 0.5862 (19) | 0.3110 (3) | 0.51273 (19) | 0.133 (2) | |
| H1W | 0.4451 | 0.3496 | 0.4906 | 0.159* | |
| H2W | 0.7111 | 0.2778 | 0.4832 | 0.159* |
| Br1 | 0.04628 (18) | 0.04800 (18) | 0.03519 (15) | −0.00207 (15) | −0.00408 (15) | −0.00074 (15) |
| N1 | 0.0457 (14) | 0.0297 (12) | 0.0319 (11) | 0.0062 (12) | −0.0001 (11) | 0.0035 (11) |
| N2 | 0.076 (2) | 0.0353 (13) | 0.0355 (13) | 0.0094 (15) | −0.0032 (15) | 0.0006 (12) |
| C1 | 0.0412 (16) | 0.0307 (15) | 0.0353 (14) | 0.0010 (12) | 0.0025 (13) | −0.0024 (12) |
| C2 | 0.0359 (19) | 0.0369 (14) | 0.0312 (13) | −0.0034 (12) | 0.0007 (12) | −0.0003 (12) |
| C3 | 0.0340 (18) | 0.0442 (17) | 0.0443 (16) | 0.0034 (14) | −0.0016 (15) | 0.0061 (14) |
| C4 | 0.0444 (16) | 0.0276 (13) | 0.0432 (16) | 0.0049 (14) | 0.0015 (17) | 0.0124 (12) |
| C5 | 0.0387 (16) | 0.0338 (14) | 0.0365 (14) | 0.0010 (14) | 0.0007 (15) | −0.0001 (12) |
| O1 | 0.0781 (19) | 0.0436 (13) | 0.0334 (11) | −0.0015 (14) | −0.0032 (13) | −0.0099 (10) |
| O2 | 0.0727 (17) | 0.0530 (13) | 0.0318 (10) | 0.0202 (14) | −0.0018 (13) | −0.0070 (10) |
| O3 | 0.0790 (19) | 0.0410 (13) | 0.0388 (11) | 0.0190 (13) | −0.0049 (13) | −0.0051 (10) |
| N3 | 0.0465 (15) | 0.0257 (11) | 0.0288 (11) | 0.0039 (11) | −0.0007 (12) | 0.0035 (9) |
| C6 | 0.0464 (18) | 0.0300 (15) | 0.0357 (15) | −0.0040 (13) | 0.0034 (14) | −0.0069 (13) |
| C7 | 0.044 (2) | 0.0346 (16) | 0.0492 (18) | 0.0092 (14) | 0.0090 (16) | −0.0031 (14) |
| C8 | 0.0439 (18) | 0.0401 (16) | 0.0475 (17) | 0.0097 (17) | 0.0011 (17) | 0.0005 (14) |
| C9 | 0.0464 (18) | 0.0403 (17) | 0.0327 (15) | 0.0047 (14) | 0.0000 (13) | 0.0055 (13) |
| C10 | 0.0374 (16) | 0.0370 (15) | 0.0308 (14) | 0.0004 (13) | 0.0030 (12) | −0.0009 (12) |
| C11 | 0.0475 (18) | 0.0330 (14) | 0.0329 (14) | 0.0045 (14) | 0.0000 (14) | −0.0007 (11) |
| O1W | 0.216 (7) | 0.109 (3) | 0.074 (2) | −0.002 (4) | −0.033 (4) | 0.026 (2) |
| Br1—C2 | 1.881 (3) | O2—C11 | 1.265 (4) |
| N1—C5 | 1.339 (4) | O3—C11 | 1.231 (4) |
| N1—C1 | 1.353 (4) | N3—C6 | 1.356 (4) |
| N1—H1B | 0.8600 | N3—C10 | 1.364 (4) |
| N2—C5 | 1.321 (4) | N3—H3B | 0.8600 |
| N2—H2A | 0.8600 | C6—C7 | 1.438 (5) |
| N2—H2B | 0.8600 | C7—C8 | 1.349 (5) |
| C1—C2 | 1.364 (4) | C7—H7A | 0.9300 |
| C1—H1A | 0.9300 | C8—C9 | 1.415 (5) |
| C2—C3 | 1.402 (5) | C8—H8A | 0.9300 |
| C3—C4 | 1.361 (5) | C9—C10 | 1.345 (5) |
| C3—H3A | 0.9300 | C9—H9A | 0.9300 |
| C4—C5 | 1.426 (4) | C10—C11 | 1.516 (4) |
| C4—H4A | 0.9300 | O1W—H1W | 0.9404 |
| O1—C6 | 1.259 (4) | O1W—H2W | 0.9428 |
| C5—N1—C1 | 122.7 (3) | C6—N3—H3B | 117.2 |
| C5—N1—H1B | 118.6 | C10—N3—H3B | 117.2 |
| C1—N1—H1B | 118.6 | O1—C6—N3 | 120.5 (3) |
| C5—N2—H2A | 120.0 | O1—C6—C7 | 125.0 (3) |
| C5—N2—H2B | 120.0 | N3—C6—C7 | 114.4 (3) |
| H2A—N2—H2B | 120.0 | C8—C7—C6 | 120.6 (3) |
| N1—C1—C2 | 120.4 (3) | C8—C7—H7A | 119.7 |
| N1—C1—H1A | 119.8 | C6—C7—H7A | 119.7 |
| C2—C1—H1A | 119.8 | C7—C8—C9 | 121.5 (3) |
| C1—C2—C3 | 118.9 (3) | C7—C8—H8A | 119.2 |
| C1—C2—Br1 | 120.3 (2) | C9—C8—H8A | 119.2 |
| C3—C2—Br1 | 120.8 (2) | C10—C9—C8 | 118.1 (3) |
| C4—C3—C2 | 120.4 (3) | C10—C9—H9A | 121.0 |
| C4—C3—H3A | 119.8 | C8—C9—H9A | 121.0 |
| C2—C3—H3A | 119.8 | C9—C10—N3 | 119.7 (3) |
| C3—C4—C5 | 119.2 (3) | C9—C10—C11 | 125.3 (3) |
| C3—C4—H4A | 120.4 | N3—C10—C11 | 115.0 (3) |
| C5—C4—H4A | 120.4 | O3—C11—O2 | 126.8 (3) |
| N2—C5—N1 | 118.8 (3) | O3—C11—C10 | 117.9 (3) |
| N2—C5—C4 | 122.9 (3) | O2—C11—C10 | 115.3 (3) |
| N1—C5—C4 | 118.4 (3) | H1W—O1W—H2W | 109.7 |
| C6—N3—C10 | 125.7 (3) | ||
| C5—N1—C1—C2 | 0.9 (5) | O1—C6—C7—C8 | 180.0 (4) |
| N1—C1—C2—C3 | 0.6 (5) | N3—C6—C7—C8 | 1.1 (5) |
| N1—C1—C2—Br1 | −178.3 (2) | C6—C7—C8—C9 | −1.1 (6) |
| C1—C2—C3—C4 | −0.7 (5) | C7—C8—C9—C10 | 0.2 (6) |
| Br1—C2—C3—C4 | 178.1 (3) | C8—C9—C10—N3 | 0.7 (5) |
| C2—C3—C4—C5 | −0.5 (5) | C8—C9—C10—C11 | −177.5 (3) |
| C1—N1—C5—N2 | 178.2 (3) | C6—N3—C10—C9 | −0.8 (5) |
| C1—N1—C5—C4 | −2.2 (5) | C6—N3—C10—C11 | 177.6 (3) |
| C3—C4—C5—N2 | −178.5 (4) | C9—C10—C11—O3 | −179.1 (4) |
| C3—C4—C5—N1 | 1.9 (5) | N3—C10—C11—O3 | 2.6 (5) |
| C10—N3—C6—O1 | −179.1 (4) | C9—C10—C11—O2 | 2.6 (6) |
| C10—N3—C6—C7 | −0.1 (5) | N3—C10—C11—O2 | −175.7 (3) |
| H··· | ||||
| N1—H1B···O2i | 0.86 | 1.79 | 2.640 (4) | 171. |
| O1W—H1W···O2ii | 0.94 | 2.17 | 2.730 (5) | 117. |
| N2—H2A···O3i | 0.86 | 2.04 | 2.896 (4) | 172. |
| N2—H2B···O1iii | 0.86 | 1.96 | 2.819 (4) | 173. |
| O1W—H2W···O1Wii | 0.94 | 2.02 | 2.782 (9) | 137. |
| N3—H3B···Br1 | 0.86 | 2.84 | 3.681 (3) | 168. |
| C3—H3A···O1 | 0.93 | 2.44 | 3.351 (4) | 167. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 1.79 | 2.640 (4) | 171 |
| O1 | 0.94 | 2.17 | 2.730 (5) | 117 |
| N2—H2 | 0.86 | 2.04 | 2.896 (4) | 172 |
| N2—H2 | 0.86 | 1.96 | 2.819 (4) | 173 |
| O1 | 0.94 | 2.02 | 2.782 (9) | 137 |
| N3—H3 | 0.86 | 2.84 | 3.681 (3) | 168 |
| C3—H3 | 0.93 | 2.44 | 3.351 (4) | 167 |
Symmetry codes: (i) ; (ii) ; (iii) .