Literature DB >> 21588284

2-Amino-4-methyl-pyridinium (E)-3-carb-oxy-prop-2-enoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(6)n class="Species">H(9)N(2) (+)·C(4)H(3)O(4) (-), the dihedral angle between the pyridine ring and the plane formed by the hydrogen fumarate anion is 85.67 (6)°. Excluding the amino and methyl groups, the atoms of the cation are coplanar, with a maximum deviation of 0.005 (1) Å. In the crystal structure, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. These motifs are further connected through N-H⋯O and C-H⋯O hydrogen bonds, leading to a supra-molecular chain along the c axis. These chains are further cross-linked via a pair of O-H⋯O hydrogen bonds involving centrosymmetrically related hydrogen fumarate anions, forming a two-dimensional network parallel to (101). These planes are further interconnected by O-H⋯O interactions into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588284      PMCID: PMC3007340          DOI: 10.1107/S1600536810026292

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of inter­molecular inter­actions, see: Lam & Mak (2000 ▶). For related structures, see: Büyükgüngör & Odabąsoğlu (2006 ▶); Hosomi et al. (2000 ▶); Smith et al. (2007 ▶); Cao et al. (2004 ▶); Natarajan et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2C4H3O4 M = 224.22 Monoclinic, a = 5.0058 (16) Å b = 19.814 (7) Å c = 11.286 (4) Å β = 108.332 (13)° V = 1062.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.36 × 0.10 × 0.07 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.962, T max = 0.992 12900 measured reflections 3387 independent reflections 2573 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.168 S = 1.07 3387 reflections 181 parameters All H-atom parameters refined Δρmax = 0.51 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810026292/wn2399sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810026292/wn2399Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C4H3O4F(000) = 472
Mr = 224.22Dx = 1.402 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2803 reflections
a = 5.0058 (16) Åθ = 2.8–31.0°
b = 19.814 (7) ŵ = 0.11 mm1
c = 11.286 (4) ÅT = 100 K
β = 108.332 (13)°Needle, colourless
V = 1062.6 (6) Å30.36 × 0.10 × 0.07 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer3387 independent reflections
Radiation source: fine-focus sealed tube2573 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 31.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→7
Tmin = 0.962, Tmax = 0.992k = −22→28
12900 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.168All H-atom parameters refined
S = 1.07w = 1/[σ2(Fo2) + (0.106P)2 + 0.0446P] where P = (Fo2 + 2Fc2)/3
3387 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.1142 (2)0.80864 (6)0.55566 (10)0.0138 (2)
N20.0376 (2)0.76324 (6)0.75413 (11)0.0166 (2)
C10.0731 (3)0.80768 (7)0.67234 (11)0.0129 (3)
C20.2978 (3)0.85492 (7)0.70188 (12)0.0143 (3)
C30.3220 (3)0.90042 (7)0.61461 (12)0.0153 (3)
C40.1210 (3)0.89903 (7)0.49325 (12)0.0176 (3)
C5−0.0911 (3)0.85296 (7)0.46726 (12)0.0159 (3)
C60.5539 (3)0.95182 (8)0.64658 (13)0.0198 (3)
O10.4413 (2)0.77430 (5)−0.00598 (9)0.0167 (2)
O20.5841 (2)0.82660 (5)0.17910 (9)0.0187 (2)
O3−0.33328 (19)0.94128 (5)−0.04434 (9)0.0170 (2)
O4−0.2087 (2)0.98609 (5)0.14785 (9)0.0184 (2)
C70.4153 (3)0.81746 (7)0.07303 (11)0.0129 (3)
C80.1559 (3)0.86036 (7)0.03171 (12)0.0144 (3)
C90.0841 (3)0.90251 (7)0.10791 (12)0.0150 (3)
C10−0.1721 (3)0.94438 (7)0.06278 (12)0.0132 (3)
H1O4−0.368 (4)1.0119 (9)0.1114 (16)0.020*
H1N1−0.278 (4)0.7781 (9)0.5333 (16)0.016*
H1N2−0.124 (4)0.7315 (9)0.7264 (16)0.016*
H2N20.141 (4)0.7622 (9)0.8262 (17)0.016*
H2A0.428 (4)0.8529 (9)0.7855 (16)0.016*
H4A0.137 (4)0.9308 (9)0.4299 (16)0.016*
H5A−0.244 (3)0.8495 (9)0.3834 (15)0.016*
H6A0.655 (4)0.9509 (10)0.5852 (16)0.020*
H6B0.683 (4)0.9461 (9)0.7285 (17)0.020*
H6C0.457 (4)0.9960 (10)0.6385 (16)0.020*
H8A0.029 (4)0.8563 (9)−0.0593 (16)0.016*
H9A0.198 (4)0.9063 (9)0.1949 (16)0.016*
U11U22U33U12U13U23
N10.0130 (5)0.0153 (6)0.0118 (5)−0.0028 (4)0.0020 (4)−0.0010 (4)
N20.0164 (5)0.0181 (6)0.0123 (5)−0.0050 (4)0.0004 (4)0.0012 (4)
C10.0126 (5)0.0137 (6)0.0119 (5)−0.0010 (4)0.0031 (4)−0.0015 (4)
C20.0145 (5)0.0156 (6)0.0127 (5)−0.0027 (4)0.0039 (4)−0.0025 (5)
C30.0161 (6)0.0164 (6)0.0146 (6)−0.0032 (5)0.0064 (5)−0.0024 (5)
C40.0206 (6)0.0197 (7)0.0135 (6)−0.0038 (5)0.0065 (5)−0.0001 (5)
C50.0167 (6)0.0184 (7)0.0115 (5)−0.0012 (5)0.0029 (4)−0.0011 (5)
C60.0208 (6)0.0206 (7)0.0188 (6)−0.0082 (5)0.0074 (5)−0.0024 (5)
O10.0160 (4)0.0174 (5)0.0143 (4)0.0045 (3)0.0013 (3)−0.0027 (4)
O20.0155 (4)0.0238 (6)0.0132 (4)0.0066 (4)−0.0007 (3)−0.0031 (4)
O30.0152 (4)0.0195 (5)0.0144 (4)0.0052 (3)0.0019 (4)−0.0021 (4)
O40.0167 (5)0.0194 (5)0.0169 (5)0.0057 (4)0.0022 (4)−0.0046 (4)
C70.0121 (5)0.0129 (6)0.0131 (5)0.0014 (4)0.0033 (4)0.0014 (4)
C80.0127 (5)0.0150 (6)0.0147 (6)0.0027 (4)0.0030 (4)−0.0002 (5)
C90.0131 (5)0.0166 (6)0.0141 (6)0.0028 (4)0.0023 (4)−0.0003 (5)
C100.0121 (5)0.0134 (6)0.0143 (6)−0.0001 (4)0.0043 (4)−0.0009 (4)
N1—C11.3553 (16)C6—H6A0.977 (18)
N1—C51.3611 (17)C6—H6B0.953 (19)
N1—H1N10.987 (18)C6—H6C0.991 (19)
N2—C11.3276 (17)O1—C71.2714 (15)
N2—H1N20.994 (18)O2—C71.2424 (16)
N2—H2N20.816 (19)O3—C101.2259 (16)
C1—C21.4202 (18)O4—C101.3224 (15)
C2—C31.3683 (18)O4—H1O40.93 (2)
C2—H2A0.964 (17)C7—C81.4987 (18)
C3—C41.4219 (19)C8—C91.3269 (18)
C3—C61.5006 (19)C8—H8A1.027 (17)
C4—C51.3604 (19)C9—C101.4769 (18)
C4—H4A0.976 (17)C9—H9A0.970 (18)
C5—H5A1.015 (17)
C1—N1—C5121.94 (11)N1—C5—H5A115.3 (10)
C1—N1—H1N1120.4 (10)C3—C6—H6A110.5 (11)
C5—N1—H1N1117.6 (10)C3—C6—H6B112.9 (11)
C1—N2—H1N2118.4 (10)H6A—C6—H6B110.0 (16)
C1—N2—H2N2121.9 (13)C3—C6—H6C105.0 (11)
H1N2—N2—H2N2119.7 (16)H6A—C6—H6C107.3 (15)
N2—C1—N1118.80 (11)H6B—C6—H6C110.9 (15)
N2—C1—C2122.92 (12)C10—O4—H1O4108.6 (11)
N1—C1—C2118.27 (11)O2—C7—O1125.82 (12)
C3—C2—C1120.53 (12)O2—C7—C8118.51 (11)
C3—C2—H2A123.2 (11)O1—C7—C8115.67 (11)
C1—C2—H2A116.3 (11)C9—C8—C7122.70 (12)
C2—C3—C4119.00 (12)C9—C8—H8A119.2 (10)
C2—C3—C6120.72 (12)C7—C8—H8A118.1 (10)
C4—C3—C6120.28 (12)C8—C9—C10120.85 (12)
C5—C4—C3119.24 (12)C8—C9—H9A120.8 (11)
C5—C4—H4A121.0 (10)C10—C9—H9A118.3 (11)
C3—C4—H4A119.7 (11)O3—C10—O4123.28 (12)
C4—C5—N1121.02 (12)O3—C10—C9122.87 (11)
C4—C5—H5A123.7 (10)O4—C10—C9113.83 (11)
C5—N1—C1—N2179.79 (12)C3—C4—C5—N10.3 (2)
C5—N1—C1—C20.38 (18)C1—N1—C5—C4−0.8 (2)
N2—C1—C2—C3−178.88 (12)O2—C7—C8—C9−7.3 (2)
N1—C1—C2—C30.51 (19)O1—C7—C8—C9172.67 (13)
C1—C2—C3—C4−1.0 (2)C7—C8—C9—C10179.34 (11)
C1—C2—C3—C6178.11 (12)C8—C9—C10—O32.0 (2)
C2—C3—C4—C50.5 (2)C8—C9—C10—O4−177.01 (12)
C6—C3—C4—C5−178.53 (13)
D—H···AD—HH···AD···AD—H···A
O4—H1O4···O3i0.928 (19)1.720 (19)2.6472 (17)179 (2)
N1—H1N1···O1ii0.987 (18)1.689 (18)2.6761 (16)179.5 (17)
N2—H1N2···O2ii0.994 (18)1.804 (18)2.7979 (16)179.0 (16)
N2—H2N2···O1iii0.816 (19)2.028 (19)2.8320 (18)168.5 (18)
C2—H2A···O3iv0.964 (18)2.596 (18)3.349 (2)135.1 (14)
C5—H5A···O2v1.015 (16)2.239 (16)3.189 (2)155.0 (13)
C6—H6B···O3iv0.954 (19)2.592 (19)3.360 (2)137.8 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H1O4⋯O3i0.928 (19)1.720 (19)2.6472 (17)179 (2)
N1—H1N1⋯O1ii0.987 (18)1.689 (18)2.6761 (16)179.5 (17)
N2—H1N2⋯O2ii0.994 (18)1.804 (18)2.7979 (16)179.0 (16)
N2—H2N2⋯O1iii0.816 (19)2.028 (19)2.8320 (18)168.5 (18)
C2—H2A⋯O3iv0.964 (18)2.596 (18)3.349 (2)135.1 (14)
C5—H5A⋯O2v1.015 (16)2.239 (16)3.189 (2)155.0 (13)
C6—H6B⋯O3iv0.954 (19)2.592 (19)3.360 (2)137.8 (16)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Glycinium hydrogen fumarate glycine solvate monohydrate.

Authors:  S Natarajan; A Kalyanasundar; J Suresh; S A Martin Britto Dhas; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04

3.  Triethylammonium hydrogen fumarate.

Authors:  H Hosomi; S Ohba; Y Ito
Journal:  Acta Crystallogr C       Date:  2000-04-15       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  Bis(2-amino-5-bromo-pyridinium) fumarate dihydrate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
  1 in total

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