| Literature DB >> 21588284 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the title salt, C(6)H(9)N(2) (+)·C(4)H(3)O(4) (-), the dihedral angle between the pyridine ring and the plane formed by the hydrogen fumarate anion is 85.67 (6)°. Excluding the amino and methyl groups, the atoms of the cation are coplanar, with a maximum deviation of 0.005 (1) Å. In the crystal structure, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. These motifs are further connected through N-H⋯O and C-H⋯O hydrogen bonds, leading to a supra-molecular chain along the c axis. These chains are further cross-linked via a pair of O-H⋯O hydrogen bonds involving centrosymmetrically related hydrogen fumarate anions, forming a two-dimensional network parallel to (101). These planes are further interconnected by O-H⋯O interactions into a three-dimensional network.Entities:
Year: 2010 PMID: 21588284 PMCID: PMC3007340 DOI: 10.1107/S1600536810026292
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C4H3O4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2803 reflections |
| θ = 2.8–31.0° | |
| µ = 0.11 mm−1 | |
| β = 108.332 (13)° | Needle, colourless |
| 0.36 × 0.10 × 0.07 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3387 independent reflections |
| Radiation source: fine-focus sealed tube | 2573 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.1°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 12900 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 3387 reflections | (Δ/σ)max = 0.001 |
| 181 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | −0.1142 (2) | 0.80864 (6) | 0.55566 (10) | 0.0138 (2) | |
| N2 | 0.0376 (2) | 0.76324 (6) | 0.75413 (11) | 0.0166 (2) | |
| C1 | 0.0731 (3) | 0.80768 (7) | 0.67234 (11) | 0.0129 (3) | |
| C2 | 0.2978 (3) | 0.85492 (7) | 0.70188 (12) | 0.0143 (3) | |
| C3 | 0.3220 (3) | 0.90042 (7) | 0.61461 (12) | 0.0153 (3) | |
| C4 | 0.1210 (3) | 0.89903 (7) | 0.49325 (12) | 0.0176 (3) | |
| C5 | −0.0911 (3) | 0.85296 (7) | 0.46726 (12) | 0.0159 (3) | |
| C6 | 0.5539 (3) | 0.95182 (8) | 0.64658 (13) | 0.0198 (3) | |
| O1 | 0.4413 (2) | 0.77430 (5) | −0.00598 (9) | 0.0167 (2) | |
| O2 | 0.5841 (2) | 0.82660 (5) | 0.17910 (9) | 0.0187 (2) | |
| O3 | −0.33328 (19) | 0.94128 (5) | −0.04434 (9) | 0.0170 (2) | |
| O4 | −0.2087 (2) | 0.98609 (5) | 0.14785 (9) | 0.0184 (2) | |
| C7 | 0.4153 (3) | 0.81746 (7) | 0.07303 (11) | 0.0129 (3) | |
| C8 | 0.1559 (3) | 0.86036 (7) | 0.03171 (12) | 0.0144 (3) | |
| C9 | 0.0841 (3) | 0.90251 (7) | 0.10791 (12) | 0.0150 (3) | |
| C10 | −0.1721 (3) | 0.94438 (7) | 0.06278 (12) | 0.0132 (3) | |
| H1O4 | −0.368 (4) | 1.0119 (9) | 0.1114 (16) | 0.020* | |
| H1N1 | −0.278 (4) | 0.7781 (9) | 0.5333 (16) | 0.016* | |
| H1N2 | −0.124 (4) | 0.7315 (9) | 0.7264 (16) | 0.016* | |
| H2N2 | 0.141 (4) | 0.7622 (9) | 0.8262 (17) | 0.016* | |
| H2A | 0.428 (4) | 0.8529 (9) | 0.7855 (16) | 0.016* | |
| H4A | 0.137 (4) | 0.9308 (9) | 0.4299 (16) | 0.016* | |
| H5A | −0.244 (3) | 0.8495 (9) | 0.3834 (15) | 0.016* | |
| H6A | 0.655 (4) | 0.9509 (10) | 0.5852 (16) | 0.020* | |
| H6B | 0.683 (4) | 0.9461 (9) | 0.7285 (17) | 0.020* | |
| H6C | 0.457 (4) | 0.9960 (10) | 0.6385 (16) | 0.020* | |
| H8A | 0.029 (4) | 0.8563 (9) | −0.0593 (16) | 0.016* | |
| H9A | 0.198 (4) | 0.9063 (9) | 0.1949 (16) | 0.016* |
| N1 | 0.0130 (5) | 0.0153 (6) | 0.0118 (5) | −0.0028 (4) | 0.0020 (4) | −0.0010 (4) |
| N2 | 0.0164 (5) | 0.0181 (6) | 0.0123 (5) | −0.0050 (4) | 0.0004 (4) | 0.0012 (4) |
| C1 | 0.0126 (5) | 0.0137 (6) | 0.0119 (5) | −0.0010 (4) | 0.0031 (4) | −0.0015 (4) |
| C2 | 0.0145 (5) | 0.0156 (6) | 0.0127 (5) | −0.0027 (4) | 0.0039 (4) | −0.0025 (5) |
| C3 | 0.0161 (6) | 0.0164 (6) | 0.0146 (6) | −0.0032 (5) | 0.0064 (5) | −0.0024 (5) |
| C4 | 0.0206 (6) | 0.0197 (7) | 0.0135 (6) | −0.0038 (5) | 0.0065 (5) | −0.0001 (5) |
| C5 | 0.0167 (6) | 0.0184 (7) | 0.0115 (5) | −0.0012 (5) | 0.0029 (4) | −0.0011 (5) |
| C6 | 0.0208 (6) | 0.0206 (7) | 0.0188 (6) | −0.0082 (5) | 0.0074 (5) | −0.0024 (5) |
| O1 | 0.0160 (4) | 0.0174 (5) | 0.0143 (4) | 0.0045 (3) | 0.0013 (3) | −0.0027 (4) |
| O2 | 0.0155 (4) | 0.0238 (6) | 0.0132 (4) | 0.0066 (4) | −0.0007 (3) | −0.0031 (4) |
| O3 | 0.0152 (4) | 0.0195 (5) | 0.0144 (4) | 0.0052 (3) | 0.0019 (4) | −0.0021 (4) |
| O4 | 0.0167 (5) | 0.0194 (5) | 0.0169 (5) | 0.0057 (4) | 0.0022 (4) | −0.0046 (4) |
| C7 | 0.0121 (5) | 0.0129 (6) | 0.0131 (5) | 0.0014 (4) | 0.0033 (4) | 0.0014 (4) |
| C8 | 0.0127 (5) | 0.0150 (6) | 0.0147 (6) | 0.0027 (4) | 0.0030 (4) | −0.0002 (5) |
| C9 | 0.0131 (5) | 0.0166 (6) | 0.0141 (6) | 0.0028 (4) | 0.0023 (4) | −0.0003 (5) |
| C10 | 0.0121 (5) | 0.0134 (6) | 0.0143 (6) | −0.0001 (4) | 0.0043 (4) | −0.0009 (4) |
| N1—C1 | 1.3553 (16) | C6—H6A | 0.977 (18) |
| N1—C5 | 1.3611 (17) | C6—H6B | 0.953 (19) |
| N1—H1N1 | 0.987 (18) | C6—H6C | 0.991 (19) |
| N2—C1 | 1.3276 (17) | O1—C7 | 1.2714 (15) |
| N2—H1N2 | 0.994 (18) | O2—C7 | 1.2424 (16) |
| N2—H2N2 | 0.816 (19) | O3—C10 | 1.2259 (16) |
| C1—C2 | 1.4202 (18) | O4—C10 | 1.3224 (15) |
| C2—C3 | 1.3683 (18) | O4—H1O4 | 0.93 (2) |
| C2—H2A | 0.964 (17) | C7—C8 | 1.4987 (18) |
| C3—C4 | 1.4219 (19) | C8—C9 | 1.3269 (18) |
| C3—C6 | 1.5006 (19) | C8—H8A | 1.027 (17) |
| C4—C5 | 1.3604 (19) | C9—C10 | 1.4769 (18) |
| C4—H4A | 0.976 (17) | C9—H9A | 0.970 (18) |
| C5—H5A | 1.015 (17) | ||
| C1—N1—C5 | 121.94 (11) | N1—C5—H5A | 115.3 (10) |
| C1—N1—H1N1 | 120.4 (10) | C3—C6—H6A | 110.5 (11) |
| C5—N1—H1N1 | 117.6 (10) | C3—C6—H6B | 112.9 (11) |
| C1—N2—H1N2 | 118.4 (10) | H6A—C6—H6B | 110.0 (16) |
| C1—N2—H2N2 | 121.9 (13) | C3—C6—H6C | 105.0 (11) |
| H1N2—N2—H2N2 | 119.7 (16) | H6A—C6—H6C | 107.3 (15) |
| N2—C1—N1 | 118.80 (11) | H6B—C6—H6C | 110.9 (15) |
| N2—C1—C2 | 122.92 (12) | C10—O4—H1O4 | 108.6 (11) |
| N1—C1—C2 | 118.27 (11) | O2—C7—O1 | 125.82 (12) |
| C3—C2—C1 | 120.53 (12) | O2—C7—C8 | 118.51 (11) |
| C3—C2—H2A | 123.2 (11) | O1—C7—C8 | 115.67 (11) |
| C1—C2—H2A | 116.3 (11) | C9—C8—C7 | 122.70 (12) |
| C2—C3—C4 | 119.00 (12) | C9—C8—H8A | 119.2 (10) |
| C2—C3—C6 | 120.72 (12) | C7—C8—H8A | 118.1 (10) |
| C4—C3—C6 | 120.28 (12) | C8—C9—C10 | 120.85 (12) |
| C5—C4—C3 | 119.24 (12) | C8—C9—H9A | 120.8 (11) |
| C5—C4—H4A | 121.0 (10) | C10—C9—H9A | 118.3 (11) |
| C3—C4—H4A | 119.7 (11) | O3—C10—O4 | 123.28 (12) |
| C4—C5—N1 | 121.02 (12) | O3—C10—C9 | 122.87 (11) |
| C4—C5—H5A | 123.7 (10) | O4—C10—C9 | 113.83 (11) |
| C5—N1—C1—N2 | 179.79 (12) | C3—C4—C5—N1 | 0.3 (2) |
| C5—N1—C1—C2 | 0.38 (18) | C1—N1—C5—C4 | −0.8 (2) |
| N2—C1—C2—C3 | −178.88 (12) | O2—C7—C8—C9 | −7.3 (2) |
| N1—C1—C2—C3 | 0.51 (19) | O1—C7—C8—C9 | 172.67 (13) |
| C1—C2—C3—C4 | −1.0 (2) | C7—C8—C9—C10 | 179.34 (11) |
| C1—C2—C3—C6 | 178.11 (12) | C8—C9—C10—O3 | 2.0 (2) |
| C2—C3—C4—C5 | 0.5 (2) | C8—C9—C10—O4 | −177.01 (12) |
| C6—C3—C4—C5 | −178.53 (13) |
| H··· | ||||
| O4—H1O4···O3i | 0.928 (19) | 1.720 (19) | 2.6472 (17) | 179 (2) |
| N1—H1N1···O1ii | 0.987 (18) | 1.689 (18) | 2.6761 (16) | 179.5 (17) |
| N2—H1N2···O2ii | 0.994 (18) | 1.804 (18) | 2.7979 (16) | 179.0 (16) |
| N2—H2N2···O1iii | 0.816 (19) | 2.028 (19) | 2.8320 (18) | 168.5 (18) |
| C2—H2A···O3iv | 0.964 (18) | 2.596 (18) | 3.349 (2) | 135.1 (14) |
| C5—H5A···O2v | 1.015 (16) | 2.239 (16) | 3.189 (2) | 155.0 (13) |
| C6—H6B···O3iv | 0.954 (19) | 2.592 (19) | 3.360 (2) | 137.8 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H1 | 0.928 (19) | 1.720 (19) | 2.6472 (17) | 179 (2) |
| N1—H1 | 0.987 (18) | 1.689 (18) | 2.6761 (16) | 179.5 (17) |
| N2—H1 | 0.994 (18) | 1.804 (18) | 2.7979 (16) | 179.0 (16) |
| N2—H2 | 0.816 (19) | 2.028 (19) | 2.8320 (18) | 168.5 (18) |
| C2—H2 | 0.964 (18) | 2.596 (18) | 3.349 (2) | 135.1 (14) |
| C5—H5 | 1.015 (16) | 2.239 (16) | 3.189 (2) | 155.0 (13) |
| C6—H6 | 0.954 (19) | 2.592 (19) | 3.360 (2) | 137.8 (16) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .