Literature DB >> 21588464

2-(3-Meth-oxy-phen-oxy)pyrimidine.

Shah Bakhtiar Nasir1, Zanariah Abdullah, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(11)H(10)N(2)O(2), the benzene ring faces towards one of the pyrimidine N atoms, and is almost orthogonal to the plane through the pyrimidine ring [dihedral angle = 84.40 (14)°]. In the crystal, the presence of C-H⋯π and π-π [centroid-centroid separation = 3.7658 (18) Å] inter-actions leads to a supra-molecular array in the ac plane. The layers thus formed inter-digitate along the b axis.

Entities:  

Year:  2010        PMID: 21588464      PMCID: PMC3007539          DOI: 10.1107/S160053681003014X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001 ▶); Abdullah (2005 ▶).

Experimental

Crystal data

C11H10N2O2 M = 202.21 Monoclinic, a = 8.8120 (16) Å b = 18.215 (3) Å c = 7.2094 (10) Å β = 119.380 (2)° V = 1008.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.40 × 0.30 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.889, T max = 1.000 4725 measured reflections 1165 independent reflections 897 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.086 S = 1.02 1165 reflections 138 parameters 2 restraints H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.10 e Å−3 Absolute structure: nd Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003014X/hb5584sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003014X/hb5584Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2O2F(000) = 424
Mr = 202.21Dx = 1.332 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1361 reflections
a = 8.8120 (16) Åθ = 2.2–21.9°
b = 18.215 (3) ŵ = 0.09 mm1
c = 7.2094 (10) ÅT = 293 K
β = 119.380 (2)°Prism, colourless
V = 1008.4 (3) Å30.40 × 0.30 × 0.08 mm
Z = 4
Bruker SMART APEX CCD diffractometer1165 independent reflections
Radiation source: fine-focus sealed tube897 reflections with I > 2σ(I)
graphiteRint = 0.033
ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.889, Tmax = 1.000k = −23→23
4725 measured reflectionsl = −9→9
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.032w = 1/[σ2(Fo2) + (0.0443P)2 + 0.0614P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.086(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.10 e Å3
1165 reflectionsΔρmin = −0.10 e Å3
138 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.016 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: nd
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5000 (2)0.02433 (8)0.5000 (3)0.0629 (5)
O20.7604 (2)0.21319 (8)0.3071 (3)0.0628 (5)
N10.2553 (3)0.09456 (10)0.4018 (3)0.0595 (5)
N20.2520 (3)−0.03621 (10)0.4056 (4)0.0655 (6)
C10.3265 (3)0.02912 (11)0.4325 (4)0.0510 (5)
C20.0840 (4)0.09409 (16)0.3359 (5)0.0756 (8)
H20.02620.13870.31290.091*
C3−0.0084 (4)0.03096 (19)0.3015 (5)0.0828 (9)
H3−0.12720.03140.25550.099*
C40.0819 (4)−0.03306 (17)0.3379 (5)0.0789 (8)
H40.0213−0.07700.31410.095*
C50.5948 (3)0.09030 (11)0.5548 (4)0.0531 (6)
C60.6335 (3)0.12134 (10)0.4098 (4)0.0484 (5)
H60.59540.09950.27760.058*
C70.7304 (3)0.18570 (11)0.4623 (3)0.0488 (5)
C80.7882 (3)0.21731 (13)0.6603 (4)0.0624 (6)
H80.85270.26050.69700.075*
C90.7481 (4)0.18335 (17)0.8027 (4)0.0771 (8)
H90.78700.20450.93590.093*
C100.6533 (3)0.11978 (16)0.7543 (4)0.0697 (7)
H100.62920.09730.85290.084*
C110.8382 (4)0.28395 (15)0.3411 (5)0.0868 (9)
H11A0.84430.29860.21690.130*
H11B0.95350.28230.46150.130*
H11C0.76920.31870.36760.130*
U11U22U33U12U13U23
O10.0614 (11)0.0435 (8)0.0919 (13)0.0088 (7)0.0438 (11)0.0096 (8)
O20.0722 (11)0.0520 (9)0.0643 (10)−0.0123 (8)0.0335 (8)−0.0019 (8)
N10.0551 (11)0.0530 (11)0.0691 (12)0.0075 (9)0.0294 (10)−0.0016 (10)
N20.0773 (15)0.0501 (12)0.0735 (14)−0.0070 (10)0.0403 (12)−0.0005 (10)
C10.0553 (14)0.0481 (12)0.0565 (14)0.0034 (10)0.0329 (12)0.0045 (10)
C20.0570 (16)0.0763 (17)0.087 (2)0.0111 (14)0.0299 (15)−0.0078 (15)
C30.0562 (17)0.101 (2)0.087 (2)−0.0074 (16)0.0322 (15)−0.0199 (17)
C40.076 (2)0.0799 (19)0.084 (2)−0.0262 (17)0.0412 (16)−0.0136 (15)
C50.0468 (12)0.0451 (12)0.0666 (14)0.0094 (9)0.0273 (11)0.0057 (10)
C60.0480 (12)0.0415 (10)0.0535 (12)0.0036 (9)0.0231 (10)−0.0013 (9)
C70.0427 (11)0.0464 (10)0.0546 (13)0.0040 (9)0.0219 (10)0.0008 (10)
C80.0555 (13)0.0619 (13)0.0614 (15)−0.0069 (11)0.0223 (12)−0.0156 (12)
C90.0779 (19)0.097 (2)0.0549 (15)−0.0069 (16)0.0315 (14)−0.0186 (15)
C100.0733 (17)0.0811 (18)0.0651 (17)0.0059 (14)0.0419 (14)0.0032 (14)
C110.103 (2)0.0589 (16)0.088 (2)−0.0223 (14)0.0389 (19)0.0037 (14)
O1—C11.361 (3)C5—C61.372 (3)
O1—C51.405 (3)C5—C101.377 (3)
O2—C71.365 (3)C6—C71.389 (3)
O2—C111.424 (3)C6—H60.9300
N1—C11.314 (3)C7—C81.384 (3)
N1—C21.342 (3)C8—C91.384 (4)
N2—C11.327 (3)C8—H80.9300
N2—C41.330 (4)C9—C101.369 (4)
C2—C31.360 (4)C9—H90.9300
C2—H20.9300C10—H100.9300
C3—C41.363 (4)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—H40.9300C11—H11C0.9600
C1—O1—C5117.01 (16)C5—C6—H6120.3
C7—O2—C11117.50 (19)C7—C6—H6120.3
C1—N1—C2114.5 (2)O2—C7—C8124.9 (2)
C1—N2—C4113.7 (2)O2—C7—C6115.23 (18)
N1—C1—N2128.9 (2)C8—C7—C6119.9 (2)
N1—C1—O1118.57 (19)C7—C8—C9118.7 (2)
N2—C1—O1112.54 (19)C7—C8—H8120.7
N1—C2—C3122.6 (3)C9—C8—H8120.7
N1—C2—H2118.7C10—C9—C8122.4 (3)
C3—C2—H2118.7C10—C9—H9118.8
C2—C3—C4116.6 (3)C8—C9—H9118.8
C2—C3—H3121.7C9—C10—C5117.7 (2)
C4—C3—H3121.7C9—C10—H10121.2
N2—C4—C3123.6 (3)C5—C10—H10121.2
N2—C4—H4118.2O2—C11—H11A109.5
C3—C4—H4118.2O2—C11—H11B109.5
C6—C5—C10122.0 (2)H11A—C11—H11B109.5
C6—C5—O1118.3 (2)O2—C11—H11C109.5
C10—C5—O1119.6 (2)H11A—C11—H11C109.5
C5—C6—C7119.3 (2)H11B—C11—H11C109.5
C2—N1—C1—N20.6 (4)C10—C5—C6—C7−2.0 (3)
C2—N1—C1—O1−179.8 (2)O1—C5—C6—C7−178.59 (19)
C4—N2—C1—N10.1 (4)C11—O2—C7—C8−8.0 (3)
C4—N2—C1—O1−179.5 (2)C11—O2—C7—C6171.7 (2)
C5—O1—C1—N16.9 (3)C5—C6—C7—O2−179.02 (19)
C5—O1—C1—N2−173.5 (2)C5—C6—C7—C80.7 (3)
C1—N1—C2—C3−0.7 (4)O2—C7—C8—C9180.0 (2)
N1—C2—C3—C40.2 (5)C6—C7—C8—C90.3 (3)
C1—N2—C4—C3−0.8 (4)C7—C8—C9—C10−0.1 (4)
C2—C3—C4—N20.6 (5)C8—C9—C10—C5−1.1 (4)
C1—O1—C5—C6−100.4 (2)C6—C5—C10—C92.1 (4)
C1—O1—C5—C1082.8 (3)O1—C5—C10—C9178.7 (2)
Cg2 is the centroid of the C5–C10 ring.
D—H···AD—HH···AD···AD—H···A
C4—H4···Cg2i0.932.893.710 (4)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯Cg2i0.932.893.710 (4)148

Symmetry code: (i) .

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