| Literature DB >> 21588583 |
Shah Bakhtiar Nasir1, Zanariah Abdullah, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.
Abstract
The pyrimidine and benzene rings in the title compound, C(10)H(8)N(2)O(2), form a dihedral angle of 71.03 (7)°, with the roughly orthogonal benzene ring being folded towards one of the pyrimidine N atoms. In the crystal, pairs of O-H⋯N hydrogen bonds connect mol-ecules related by twofold symmetry into dimeric aggregates. These associate into a supra-molecular chain propagating along the b axis by way of C-H⋯π contacts. The chains are cross-linked by π-π inter-actions that occur between pyrimidine rings [ring centroid-centroid distances = 3.5393 (9) and 3.5697 (9) Å].Entities:
Year: 2010 PMID: 21588583 PMCID: PMC3007867 DOI: 10.1107/S1600536810030448
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H8N2O2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2567 reflections |
| θ = 3.0–26.9° | |
| µ = 0.10 mm−1 | |
| β = 92.521 (1)° | Block, colourless |
| 0.32 × 0.30 × 0.10 mm | |
| Bruker SMART APEX CCD diffractometer | 2048 independent reflections |
| Radiation source: fine-focus sealed tube | 1569 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 8265 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2048 reflections | (Δ/σ)max = 0.001 |
| 130 parameters | Δρmax = 0.17 e Å−3 |
| 1 restraint | Δρmin = −0.18 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.44378 (5) | 0.18501 (12) | 0.65018 (7) | 0.0445 (3) | |
| O2 | 0.38586 (6) | 0.06384 (16) | 0.82550 (8) | 0.0622 (3) | |
| H2o | 0.4144 (10) | 0.156 (2) | 0.8229 (16) | 0.093* | |
| N1 | 0.39630 (6) | 0.47232 (14) | 0.61828 (9) | 0.0431 (3) | |
| N2 | 0.52544 (6) | 0.41044 (15) | 0.63993 (8) | 0.0423 (3) | |
| C1 | 0.45408 (7) | 0.36583 (16) | 0.63476 (9) | 0.0356 (3) | |
| C2 | 0.41257 (8) | 0.64865 (19) | 0.60601 (12) | 0.0523 (4) | |
| H2 | 0.3740 | 0.7306 | 0.5935 | 0.063* | |
| C3 | 0.48369 (9) | 0.71379 (19) | 0.61104 (12) | 0.0542 (4) | |
| H3 | 0.4940 | 0.8371 | 0.6031 | 0.065* | |
| C4 | 0.53883 (8) | 0.5881 (2) | 0.62839 (10) | 0.0491 (3) | |
| H4 | 0.5877 | 0.6283 | 0.6323 | 0.059* | |
| C5 | 0.37173 (7) | 0.11373 (16) | 0.64788 (10) | 0.0396 (3) | |
| C6 | 0.33142 (8) | 0.09337 (19) | 0.55923 (12) | 0.0537 (4) | |
| H6 | 0.3495 | 0.1381 | 0.5001 | 0.064* | |
| C7 | 0.26364 (9) | 0.0057 (2) | 0.55871 (14) | 0.0651 (5) | |
| H7 | 0.2356 | −0.0076 | 0.4993 | 0.078* | |
| C8 | 0.23810 (8) | −0.0614 (2) | 0.64619 (15) | 0.0653 (5) | |
| H8 | 0.1927 | −0.1212 | 0.6456 | 0.078* | |
| C9 | 0.27880 (8) | −0.0416 (2) | 0.73537 (13) | 0.0575 (4) | |
| H9 | 0.2609 | −0.0885 | 0.7941 | 0.069* | |
| C10 | 0.34627 (7) | 0.04819 (17) | 0.73708 (11) | 0.0438 (3) |
| O1 | 0.0343 (5) | 0.0366 (5) | 0.0623 (6) | 0.0010 (4) | −0.0025 (4) | 0.0077 (4) |
| O2 | 0.0621 (7) | 0.0705 (7) | 0.0534 (6) | −0.0158 (5) | −0.0041 (5) | 0.0089 (5) |
| N1 | 0.0372 (6) | 0.0360 (6) | 0.0557 (7) | 0.0015 (4) | −0.0036 (5) | −0.0019 (5) |
| N2 | 0.0337 (6) | 0.0490 (6) | 0.0441 (6) | −0.0023 (5) | 0.0010 (4) | 0.0043 (5) |
| C1 | 0.0352 (6) | 0.0372 (6) | 0.0343 (6) | −0.0008 (5) | −0.0012 (5) | 0.0006 (5) |
| C2 | 0.0516 (8) | 0.0359 (7) | 0.0686 (10) | 0.0031 (6) | −0.0070 (7) | −0.0024 (6) |
| C3 | 0.0606 (9) | 0.0385 (7) | 0.0634 (9) | −0.0089 (6) | 0.0005 (7) | 0.0007 (6) |
| C4 | 0.0423 (7) | 0.0553 (8) | 0.0499 (8) | −0.0131 (6) | 0.0026 (6) | 0.0023 (6) |
| C5 | 0.0336 (6) | 0.0292 (6) | 0.0554 (8) | 0.0001 (5) | −0.0040 (5) | 0.0032 (5) |
| C6 | 0.0587 (9) | 0.0440 (8) | 0.0570 (9) | −0.0057 (6) | −0.0124 (7) | 0.0083 (6) |
| C7 | 0.0621 (10) | 0.0485 (8) | 0.0818 (12) | −0.0098 (7) | −0.0306 (9) | 0.0079 (8) |
| C8 | 0.0411 (8) | 0.0475 (8) | 0.1058 (14) | −0.0096 (6) | −0.0125 (8) | 0.0084 (9) |
| C9 | 0.0461 (8) | 0.0508 (9) | 0.0759 (11) | −0.0063 (6) | 0.0066 (7) | 0.0076 (7) |
| C10 | 0.0397 (7) | 0.0364 (6) | 0.0550 (8) | 0.0006 (5) | −0.0014 (6) | 0.0018 (6) |
| O1—C1 | 1.3554 (15) | C4—H4 | 0.9300 |
| O1—C5 | 1.4029 (14) | C5—C6 | 1.3741 (18) |
| O2—C10 | 1.3619 (17) | C5—C10 | 1.385 (2) |
| O2—H2o | 0.852 (16) | C6—C7 | 1.384 (2) |
| N1—C1 | 1.3151 (16) | C6—H6 | 0.9300 |
| N1—C2 | 1.3372 (17) | C7—C8 | 1.370 (3) |
| N2—C1 | 1.3302 (16) | C7—H7 | 0.9300 |
| N2—C4 | 1.3347 (18) | C8—C9 | 1.383 (2) |
| C2—C3 | 1.371 (2) | C8—H8 | 0.9300 |
| C2—H2 | 0.9300 | C9—C10 | 1.3857 (19) |
| C3—C4 | 1.370 (2) | C9—H9 | 0.9300 |
| C3—H3 | 0.9300 | ||
| C1—O1—C5 | 119.64 (9) | C6—C5—O1 | 121.09 (12) |
| C10—O2—H2o | 109.1 (15) | C10—C5—O1 | 116.98 (11) |
| C1—N1—C2 | 114.63 (11) | C5—C6—C7 | 119.40 (14) |
| C1—N2—C4 | 114.48 (11) | C5—C6—H6 | 120.3 |
| N1—C1—N2 | 128.66 (12) | C7—C6—H6 | 120.3 |
| N1—C1—O1 | 119.50 (11) | C8—C7—C6 | 119.62 (15) |
| N2—C1—O1 | 111.84 (10) | C8—C7—H7 | 120.2 |
| N1—C2—C3 | 122.80 (13) | C6—C7—H7 | 120.2 |
| N1—C2—H2 | 118.6 | C7—C8—C9 | 120.99 (14) |
| C3—C2—H2 | 118.6 | C7—C8—H8 | 119.5 |
| C4—C3—C2 | 116.65 (13) | C9—C8—H8 | 119.5 |
| C4—C3—H3 | 121.7 | C8—C9—C10 | 119.92 (15) |
| C2—C3—H3 | 121.7 | C8—C9—H9 | 120.0 |
| N2—C4—C3 | 122.77 (13) | C10—C9—H9 | 120.0 |
| N2—C4—H4 | 118.6 | O2—C10—C5 | 122.64 (12) |
| C3—C4—H4 | 118.6 | O2—C10—C9 | 118.89 (13) |
| C6—C5—C10 | 121.62 (12) | C5—C10—C9 | 118.44 (13) |
| C2—N1—C1—N2 | −0.6 (2) | C10—C5—C6—C7 | 0.1 (2) |
| C2—N1—C1—O1 | 178.72 (12) | O1—C5—C6—C7 | 173.48 (13) |
| C4—N2—C1—N1 | 1.30 (19) | C5—C6—C7—C8 | −0.8 (2) |
| C4—N2—C1—O1 | −178.02 (11) | C6—C7—C8—C9 | 0.5 (3) |
| C5—O1—C1—N1 | 0.31 (17) | C7—C8—C9—C10 | 0.4 (2) |
| C5—O1—C1—N2 | 179.70 (10) | C6—C5—C10—O2 | 178.77 (13) |
| C1—N1—C2—C3 | −0.5 (2) | O1—C5—C10—O2 | 5.17 (18) |
| N1—C2—C3—C4 | 0.7 (2) | C6—C5—C10—C9 | 0.8 (2) |
| C1—N2—C4—C3 | −1.0 (2) | O1—C5—C10—C9 | −172.84 (12) |
| C2—C3—C4—N2 | 0.1 (2) | C8—C9—C10—O2 | −179.10 (14) |
| C1—O1—C5—C6 | 73.64 (16) | C8—C9—C10—C5 | −1.0 (2) |
| C1—O1—C5—C10 | −112.73 (13) |
| Cg1 is the centroid of the C5–C10 ring. |
| H··· | ||||
| O2—H2o···N2i | 0.85 (2) | 2.21 (1) | 3.0292 (16) | 163 (2) |
| C2—H2···Cg1ii | 0.93 | 2.62 | 3.4424 (16) | 148 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C5–C10 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.85 (2) | 2.21 (1) | 3.0292 (16) | 163 (2) |
| C2—H2⋯ | 0.93 | 2.62 | 3.4424 (16) | 148 |
Symmetry codes: (i) ; (ii) .