Literature DB >> 21588752

2-(4-Meth-oxy-phen-oxy)-3-nitro-pyridine.

Shah Bakhtiar Nasir1, Zanariah Abdullah, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title mol-ecule, C(12)H(10)N(2)O(4), the n class="Chemical">pyridine and benzene rings are almost orthogonal [dihedral angle = 86.69 (11)°], with the pyridine N atom directed towards the centre of the benzene ring. The -NO(2) [O-N-C-C = -26.1 (3)°] and -OMe [C-O-C-C = 166.5 (2)°] substituents are not coplanar with their respective aromatic rings. In the crystal, supra-molecular layers in the ab plane are formed via C-H⋯π inter-actions involving methyl H atoms and the pyridine and benzene rings. Short N-O⋯π contacts (where the π-system is derived from the pyridine ring) occur between layers in the c-axis direction.

Entities:  

Year:  2010        PMID: 21588752      PMCID: PMC3007986          DOI: 10.1107/S1600536810034057

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001 ▶); Abdullah (2005 ▶). For a related structure, see: Nasir et al. (2010 ▶).

Experimental

Crystal data

C12H10N2O4 M = 246.22 Orthorhombic, a = 7.4737 (10) Å b = 12.8128 (17) Å c = 24.529 (3) Å V = 2348.8 (5) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.28 × 0.07 mm

Data collection

Bruker SMART APEX CCD diffractometer 16986 measured reflections 2066 independent reflections 1364 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.123 S = 1.03 2066 reflections 165 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810034057/hb5614sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034057/hb5614Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O4F(000) = 1024
Mr = 246.22Dx = 1.393 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2051 reflections
a = 7.4737 (10) Åθ = 3.2–20.1°
b = 12.8128 (17) ŵ = 0.11 mm1
c = 24.529 (3) ÅT = 293 K
V = 2348.8 (5) Å3Block, colourless
Z = 80.30 × 0.28 × 0.07 mm
Bruker SMART APEX CCD diffractometer1364 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.060
graphiteθmax = 25.0°, θmin = 1.7°
ω scansh = −8→8
16986 measured reflectionsk = −15→15
2066 independent reflectionsl = −27→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0589P)2 + 0.4422P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2066 reflectionsΔρmax = 0.19 e Å3
165 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0042 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6185 (3)0.61280 (14)0.47253 (8)0.0772 (6)
O20.4138 (3)0.73025 (14)0.47339 (9)0.0986 (7)
O30.56918 (18)0.47091 (11)0.39640 (7)0.0603 (5)
O40.8030 (2)0.16173 (11)0.25569 (7)0.0659 (5)
N10.2758 (2)0.42013 (14)0.38381 (8)0.0536 (5)
N20.4665 (3)0.64262 (14)0.46264 (8)0.0553 (5)
C10.3912 (3)0.48503 (15)0.40591 (9)0.0440 (5)
C20.3378 (3)0.57022 (15)0.43811 (8)0.0450 (5)
C30.1573 (3)0.58629 (19)0.44736 (9)0.0578 (6)
H30.11810.64240.46820.069*
C40.0362 (3)0.5166 (2)0.42471 (11)0.0654 (7)
H4−0.08610.52450.43030.078*
C50.1010 (3)0.4359 (2)0.39382 (10)0.0607 (6)
H50.01920.38920.37890.073*
C60.6196 (3)0.39115 (16)0.35921 (10)0.0473 (6)
C70.6735 (3)0.29624 (17)0.37948 (9)0.0518 (6)
H70.66840.28260.41670.062*
C80.7358 (3)0.22109 (16)0.34344 (9)0.0521 (6)
H80.77390.15670.35660.063*
C90.7416 (3)0.24148 (15)0.28798 (9)0.0478 (6)
C100.6896 (3)0.33849 (16)0.26848 (10)0.0557 (6)
H100.69600.35310.23140.067*
C110.6281 (3)0.41331 (16)0.30457 (10)0.0556 (6)
H110.59260.47840.29180.067*
C120.7750 (4)0.1697 (2)0.19822 (10)0.0708 (8)
H12A0.81730.10740.18070.106*
H12B0.83930.22890.18430.106*
H12C0.64960.17830.19100.106*
U11U22U33U12U13U23
O10.0679 (12)0.0787 (13)0.0851 (14)0.0010 (10)−0.0152 (10)−0.0238 (10)
O20.1079 (17)0.0574 (11)0.1304 (18)0.0146 (11)−0.0116 (14)−0.0361 (11)
O30.0388 (9)0.0600 (9)0.0822 (12)−0.0012 (7)0.0057 (8)−0.0320 (8)
O40.0852 (14)0.0505 (9)0.0620 (11)0.0161 (8)0.0111 (9)−0.0123 (8)
N10.0424 (11)0.0514 (11)0.0669 (13)−0.0061 (9)0.0038 (9)−0.0059 (9)
N20.0690 (14)0.0490 (11)0.0478 (12)0.0041 (10)0.0011 (10)−0.0068 (9)
C10.0413 (12)0.0424 (11)0.0483 (13)0.0008 (9)0.0061 (10)−0.0011 (9)
C20.0500 (13)0.0437 (11)0.0414 (12)0.0054 (10)0.0039 (10)0.0027 (9)
C30.0606 (16)0.0626 (14)0.0503 (14)0.0187 (13)0.0118 (12)0.0007 (11)
C40.0432 (14)0.0796 (18)0.0733 (18)0.0092 (13)0.0110 (13)0.0079 (14)
C50.0426 (13)0.0678 (15)0.0717 (17)−0.0073 (12)0.0027 (12)0.0039 (13)
C60.0353 (11)0.0450 (12)0.0616 (15)−0.0023 (9)0.0046 (10)−0.0141 (10)
C70.0469 (13)0.0571 (13)0.0514 (14)−0.0012 (10)0.0048 (11)−0.0043 (11)
C80.0534 (14)0.0427 (11)0.0604 (15)0.0064 (10)0.0017 (12)0.0002 (11)
C90.0470 (13)0.0431 (11)0.0533 (14)0.0015 (10)0.0057 (11)−0.0051 (10)
C100.0661 (16)0.0468 (12)0.0540 (15)0.0027 (11)0.0072 (12)0.0020 (10)
C110.0587 (15)0.0386 (11)0.0694 (17)0.0041 (10)0.0021 (13)−0.0019 (11)
C120.0761 (19)0.0777 (17)0.0585 (17)0.0018 (14)0.0073 (14)−0.0230 (13)
O1—N21.223 (2)C5—H50.9300
O2—N21.219 (2)C6—C111.371 (3)
O3—C11.363 (3)C6—C71.374 (3)
O3—C61.421 (2)C7—C81.388 (3)
O4—C91.372 (2)C7—H70.9300
O4—C121.429 (3)C8—C91.386 (3)
N1—C11.315 (3)C8—H80.9300
N1—C51.345 (3)C9—C101.387 (3)
N2—C21.466 (3)C10—C111.384 (3)
C1—C21.405 (3)C10—H100.9300
C2—C31.383 (3)C11—H110.9300
C3—C41.387 (3)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.371 (3)C12—H12C0.9600
C4—H40.9300
C1—O3—C6117.66 (15)C7—C6—O3118.8 (2)
C9—O4—C12117.84 (18)C6—C7—C8118.8 (2)
C1—N1—C5117.85 (19)C6—C7—H7120.6
O2—N2—O1123.0 (2)C8—C7—H7120.6
O2—N2—C2117.4 (2)C7—C8—C9120.3 (2)
O1—N2—C2119.57 (18)C7—C8—H8119.8
N1—C1—O3119.05 (18)C9—C8—H8119.8
N1—C1—C2122.5 (2)O4—C9—C10124.2 (2)
O3—C1—C2118.47 (18)O4—C9—C8115.89 (19)
C3—C2—C1119.0 (2)C10—C9—C8119.90 (19)
C3—C2—N2118.59 (19)C11—C10—C9119.6 (2)
C1—C2—N2122.40 (19)C11—C10—H10120.2
C2—C3—C4118.3 (2)C9—C10—H10120.2
C2—C3—H3120.8C6—C11—C10119.8 (2)
C4—C3—H3120.8C6—C11—H11120.1
C5—C4—C3118.5 (2)C10—C11—H11120.1
C5—C4—H4120.8O4—C12—H12A109.5
C3—C4—H4120.8O4—C12—H12B109.5
N1—C5—C4123.9 (2)H12A—C12—H12B109.5
N1—C5—H5118.1O4—C12—H12C109.5
C4—C5—H5118.1H12A—C12—H12C109.5
C11—C6—C7121.54 (19)H12B—C12—H12C109.5
C11—C6—O3119.39 (19)
C5—N1—C1—O3−180.0 (2)C3—C4—C5—N1−0.3 (4)
C5—N1—C1—C2−1.4 (3)C1—O3—C6—C1186.8 (2)
C6—O3—C1—N15.0 (3)C1—O3—C6—C7−98.8 (2)
C6—O3—C1—C2−173.55 (19)C11—C6—C7—C8−0.8 (3)
N1—C1—C2—C30.5 (3)O3—C6—C7—C8−175.10 (18)
O3—C1—C2—C3179.02 (19)C6—C7—C8—C9−0.6 (3)
N1—C1—C2—N2−179.89 (19)C12—O4—C9—C10−14.5 (3)
O3—C1—C2—N2−1.4 (3)C12—O4—C9—C8166.5 (2)
O2—N2—C2—C3−24.8 (3)C7—C8—C9—O4−179.2 (2)
O1—N2—C2—C3153.5 (2)C7—C8—C9—C101.8 (3)
O2—N2—C2—C1155.6 (2)O4—C9—C10—C11179.4 (2)
O1—N2—C2—C1−26.1 (3)C8—C9—C10—C11−1.6 (3)
C1—C2—C3—C40.6 (3)C7—C6—C11—C101.0 (3)
N2—C2—C3—C4−179.1 (2)O3—C6—C11—C10175.26 (19)
C2—C3—C4—C5−0.6 (4)C9—C10—C11—C60.2 (4)
C1—N1—C5—C41.4 (4)
Cg1 and Cg2 are the centroids of the N1,C1–C5 and C6–C11 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C12—H12a···Cg1i0.962.733.521 (3)140
C12—H12b···Cg2ii0.962.803.616 (3)143
N2—O1···Cg1iii1.223 (2)3.350 (2)4.240 (2)129.93 (15)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1,C1–C5 and C6–C11 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12a⋯Cg1i0.962.733.521 (3)140
C12—H12b⋯Cg2ii0.962.803.616 (3)143
N2—O1⋯Cg1iii1.22 (1)3.35 (1)4.240 (2)130 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(3-Meth-oxy-phen-oxy)pyrimidine.

Authors:  Shah Bakhtiar Nasir; Zanariah Abdullah; Zainal A Fairuz; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  2 in total
  3 in total

1.  2-(4-Methyl-phen-oxy)-5-nitro-pyridine.

Authors:  Shah Bakhtiar Nasir; Zainal Abidin Fairuz; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

2.  2-(Naphthalen-2-yl-oxy)-5-nitro-pyridine.

Authors:  Shah Bakhtiar Nasir; Zainal Abidin Fairuz; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  2-(2-Meth-oxy-phen-oxy)-3-nitro-pyridine.

Authors:  Shah Bakhtiar Nasir; Zainal Abidin Fairuz; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05
  3 in total

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