Literature DB >> 23723921

Methyl 3,5-bis-[(3-chloro-pyrazin-2-yl)-oxy]benzoate.

Thothadri Srinivasan1, Venkatesan Kalpana, Perumal Rajakumar, Devadasan Velmurugan.   

Abstract

In the title compound, C16H10Cl2N4O4, the pyrazine rings make dihedral angles of 67.82 (9) and 75.91 (9)° with the benzene ring, while the dihedral angle between the pyrazine rings is 44.69 (10)°. The meth-oxy-carbonyl group makes a dihedral angle of 16.82 (8)° with the benzene ring to which it is attached. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules, forming chains running along the ab plane.

Entities:  

Year:  2013        PMID: 23723921      PMCID: PMC3648301          DOI: 10.1107/S1600536813010465

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of the pyrazine ring system in drug development, see: Du et al. (2009 ▶); Dubinina et al. (2006 ▶); Ellsworth et al. (2007 ▶); Mukaiyama et al. (2007 ▶). For a related structure, see: Nasir et al. (2010 ▶).

Experimental

Crystal data

C16H10Cl2N4O4 M = 393.18 Triclinic, a = 8.5437 (15) Å b = 9.2984 (18) Å c = 11.545 (2) Å α = 88.592 (10)° β = 74.974 (9)° γ = 73.231 (9)° V = 846.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.886, T max = 0.922 12425 measured reflections 3453 independent reflections 3076 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.124 S = 1.04 3453 reflections 236 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813010465/pv2625sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010465/pv2625Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010465/pv2625Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10Cl2N4O4Z = 2
Mr = 393.18F(000) = 400
Triclinic, P1Dx = 1.542 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5437 (15) ÅCell parameters from 3453 reflections
b = 9.2984 (18) Åθ = 1.8–26.6°
c = 11.545 (2) ŵ = 0.41 mm1
α = 88.592 (10)°T = 293 K
β = 74.974 (9)°Block, colourless
γ = 73.231 (9)°0.30 × 0.25 × 0.20 mm
V = 846.9 (3) Å3
Bruker SMART APEXII area-detector diffractometer3453 independent reflections
Radiation source: fine-focus sealed tube3076 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scansθmax = 26.6°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.886, Tmax = 0.922k = −11→11
12425 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0678P)2 + 0.3652P] where P = (Fo2 + 2Fc2)/3
3453 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.2164 (2)−0.13661 (19)0.56898 (15)0.0357 (4)
C21.3326 (2)−0.2435 (2)0.48010 (16)0.0392 (4)
C31.2200 (3)−0.4217 (2)0.5674 (2)0.0512 (5)
H31.2182−0.52120.57140.061*
C41.1050 (3)−0.3171 (2)0.65286 (19)0.0486 (4)
H41.0265−0.34760.71250.058*
C51.1396 (2)0.10665 (18)0.66279 (15)0.0364 (4)
C61.1808 (2)0.07829 (19)0.77108 (16)0.0377 (4)
H61.2538−0.01360.78230.045*
C71.1100 (2)0.19087 (19)0.86279 (16)0.0376 (4)
C80.9977 (2)0.32842 (19)0.84678 (16)0.0394 (4)
H80.95320.40460.90730.047*
C90.9551 (2)0.34790 (19)0.73925 (17)0.0376 (4)
C101.0255 (2)0.23987 (19)0.64574 (16)0.0383 (4)
H100.99700.25620.57310.046*
C110.6780 (2)0.5146 (2)0.76707 (15)0.0376 (4)
C120.5715 (2)0.6516 (2)0.74204 (17)0.0443 (4)
C130.3460 (3)0.5899 (3)0.8520 (2)0.0683 (7)
H130.22940.61210.88380.082*
C140.4482 (3)0.4569 (3)0.8760 (2)0.0594 (6)
H140.39930.39080.92350.071*
C151.1546 (2)0.1705 (2)0.98024 (17)0.0458 (4)
C161.2714 (4)−0.0079 (3)1.1083 (2)0.0749 (8)
H16A1.35820.03661.11280.112*
H16B1.3125−0.11501.11230.112*
H16C1.17330.03181.17420.112*
N11.3349 (2)−0.38465 (18)0.47831 (15)0.0479 (4)
N21.10203 (19)−0.17218 (18)0.65331 (14)0.0427 (3)
N30.4081 (2)0.6891 (2)0.78443 (18)0.0618 (5)
N40.6181 (2)0.41812 (19)0.83301 (15)0.0462 (4)
O11.22265 (18)0.00741 (14)0.56204 (11)0.0460 (3)
O20.84699 (15)0.48570 (14)0.71782 (13)0.0445 (3)
O31.1276 (3)0.27208 (19)1.05207 (15)0.0702 (5)
O41.2263 (2)0.02685 (17)0.99597 (13)0.0623 (4)
Cl11.47807 (7)−0.18931 (7)0.36871 (5)0.06146 (19)
Cl20.65455 (7)0.77453 (6)0.65015 (6)0.06183 (19)
U11U22U33U12U13U23
C10.0370 (8)0.0322 (8)0.0376 (8)−0.0068 (6)−0.0133 (7)0.0005 (7)
C20.0381 (8)0.0391 (9)0.0390 (9)−0.0076 (7)−0.0117 (7)−0.0023 (7)
C30.0665 (13)0.0348 (10)0.0563 (12)−0.0176 (9)−0.0197 (10)0.0023 (8)
C40.0532 (11)0.0477 (11)0.0505 (11)−0.0232 (9)−0.0137 (9)0.0039 (9)
C50.0381 (8)0.0292 (8)0.0387 (9)−0.0092 (6)−0.0052 (7)−0.0010 (7)
C60.0351 (8)0.0289 (8)0.0434 (9)−0.0028 (6)−0.0078 (7)0.0018 (7)
C70.0357 (8)0.0336 (8)0.0402 (9)−0.0070 (7)−0.0082 (7)0.0030 (7)
C80.0371 (8)0.0315 (8)0.0433 (9)−0.0049 (7)−0.0050 (7)−0.0018 (7)
C90.0310 (8)0.0283 (8)0.0498 (10)−0.0052 (6)−0.0087 (7)0.0068 (7)
C100.0391 (9)0.0361 (9)0.0410 (9)−0.0112 (7)−0.0128 (7)0.0059 (7)
C110.0367 (8)0.0358 (9)0.0377 (9)−0.0049 (7)−0.0113 (7)−0.0021 (7)
C120.0453 (10)0.0402 (10)0.0426 (9)−0.0009 (8)−0.0161 (8)0.0015 (8)
C130.0368 (10)0.0936 (19)0.0598 (13)−0.0022 (11)−0.0063 (9)0.0058 (13)
C140.0465 (11)0.0787 (16)0.0515 (12)−0.0204 (11)−0.0089 (9)0.0103 (11)
C150.0447 (10)0.0449 (10)0.0424 (10)−0.0061 (8)−0.0100 (8)0.0018 (8)
C160.0865 (18)0.0765 (17)0.0503 (13)0.0020 (14)−0.0283 (12)0.0137 (12)
N10.0530 (9)0.0366 (8)0.0518 (9)−0.0062 (7)−0.0168 (7)−0.0036 (7)
N20.0406 (8)0.0419 (8)0.0449 (8)−0.0126 (6)−0.0093 (6)−0.0002 (6)
N30.0438 (9)0.0655 (12)0.0591 (11)0.0096 (8)−0.0132 (8)0.0027 (9)
N40.0418 (8)0.0467 (9)0.0483 (9)−0.0107 (7)−0.0114 (7)0.0056 (7)
O10.0592 (8)0.0332 (6)0.0397 (7)−0.0130 (6)−0.0035 (6)−0.0006 (5)
O20.0352 (6)0.0316 (6)0.0607 (8)−0.0030 (5)−0.0107 (6)0.0111 (6)
O30.1037 (14)0.0530 (9)0.0501 (9)−0.0085 (9)−0.0293 (9)−0.0063 (7)
O40.0801 (11)0.0483 (8)0.0498 (8)0.0040 (7)−0.0279 (8)0.0045 (7)
Cl10.0616 (3)0.0610 (3)0.0520 (3)−0.0218 (3)0.0069 (2)−0.0066 (2)
Cl20.0665 (3)0.0411 (3)0.0743 (4)−0.0066 (2)−0.0239 (3)0.0175 (2)
C1—N21.300 (2)C9—C101.380 (3)
C1—O11.355 (2)C9—O21.4057 (19)
C1—C21.407 (2)C10—H100.9300
C2—N11.308 (2)C11—N41.294 (2)
C2—Cl11.7185 (19)C11—O21.356 (2)
C3—N11.340 (3)C11—C121.409 (2)
C3—C41.370 (3)C12—N31.297 (3)
C3—H30.9300C12—Cl21.718 (2)
C4—N21.340 (3)C13—N31.332 (3)
C4—H40.9300C13—C141.362 (4)
C5—C61.384 (2)C13—H130.9300
C5—C101.383 (2)C14—N41.348 (3)
C5—O11.398 (2)C14—H140.9300
C6—C71.393 (2)C15—O31.203 (3)
C6—H60.9300C15—O41.329 (2)
C7—C81.401 (2)C16—O41.450 (3)
C7—C151.495 (3)C16—H16A0.9600
C8—C91.375 (3)C16—H16B0.9600
C8—H80.9300C16—H16C0.9600
N2—C1—O1120.32 (16)C5—C10—H10120.8
N2—C1—C2121.66 (16)N4—C11—O2120.75 (16)
O1—C1—C2117.98 (15)N4—C11—C12121.81 (17)
N1—C2—C1122.44 (17)O2—C11—C12117.44 (16)
N1—C2—Cl1117.86 (14)N3—C12—C11122.06 (19)
C1—C2—Cl1119.69 (14)N3—C12—Cl2117.28 (15)
N1—C3—C4121.89 (18)C11—C12—Cl2120.64 (15)
N1—C3—H3119.1N3—C13—C14121.9 (2)
C4—C3—H3119.1N3—C13—H13119.0
N2—C4—C3122.12 (18)C14—C13—H13119.0
N2—C4—H4118.9N4—C14—C13122.0 (2)
C3—C4—H4118.9N4—C14—H14119.0
C6—C5—C10121.86 (16)C13—C14—H14119.0
C6—C5—O1121.32 (15)O3—C15—O4124.21 (19)
C10—C5—O1116.59 (15)O3—C15—C7123.90 (18)
C5—C6—C7118.28 (15)O4—C15—C7111.88 (17)
C5—C6—H6120.9O4—C16—H16A109.5
C7—C6—H6120.9O4—C16—H16B109.5
C6—C7—C8120.99 (16)H16A—C16—H16B109.5
C6—C7—C15121.16 (15)O4—C16—H16C109.5
C8—C7—C15117.83 (16)H16A—C16—H16C109.5
C9—C8—C7118.26 (16)H16B—C16—H16C109.5
C9—C8—H8120.9C2—N1—C3115.66 (17)
C7—C8—H8120.9C1—N2—C4116.18 (17)
C8—C9—C10122.16 (15)C12—N3—C13116.28 (19)
C8—C9—O2120.22 (16)C11—N4—C14115.96 (18)
C10—C9—O2117.42 (16)C1—O1—C5118.77 (13)
C9—C10—C5118.35 (16)C11—O2—C9118.32 (13)
C9—C10—H10120.8C15—O4—C16117.08 (18)
N2—C1—C2—N1−1.4 (3)C6—C7—C15—O4−17.0 (3)
O1—C1—C2—N1−179.07 (16)C8—C7—C15—O4164.56 (17)
N2—C1—C2—Cl1178.52 (14)C1—C2—N1—C3−0.5 (3)
O1—C1—C2—Cl10.9 (2)Cl1—C2—N1—C3179.52 (14)
N1—C3—C4—N2−0.9 (3)C4—C3—N1—C21.6 (3)
C10—C5—C6—C7−2.9 (3)O1—C1—N2—C4179.72 (16)
O1—C5—C6—C7171.39 (15)C2—C1—N2—C42.1 (3)
C5—C6—C7—C81.1 (3)C3—C4—N2—C1−1.0 (3)
C5—C6—C7—C15−177.37 (16)C11—C12—N3—C13−0.8 (3)
C6—C7—C8—C91.9 (3)Cl2—C12—N3—C13177.75 (19)
C15—C7—C8—C9−179.61 (16)C14—C13—N3—C120.4 (4)
C7—C8—C9—C10−3.3 (3)O2—C11—N4—C14−179.00 (18)
C7—C8—C9—O2−178.05 (15)C12—C11—N4—C140.0 (3)
C8—C9—C10—C51.5 (3)C13—C14—N4—C11−0.4 (3)
O2—C9—C10—C5176.47 (15)N2—C1—O1—C517.9 (2)
C6—C5—C10—C91.6 (3)C2—C1—O1—C5−164.46 (15)
O1—C5—C10—C9−172.90 (15)C6—C5—O1—C159.1 (2)
N4—C11—C12—N30.6 (3)C10—C5—O1—C1−126.30 (17)
O2—C11—C12—N3179.63 (18)N4—C11—O2—C90.6 (3)
N4—C11—C12—Cl2−177.87 (15)C12—C11—O2—C9−178.44 (16)
O2—C11—C12—Cl21.2 (2)C8—C9—O2—C11−78.8 (2)
N3—C13—C14—N40.2 (4)C10—C9—O2—C11106.15 (18)
C6—C7—C15—O3163.5 (2)O3—C15—O4—C161.1 (3)
C8—C7—C15—O3−15.0 (3)C7—C15—O4—C16−178.4 (2)
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.932.473.192 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O2i 0.932.473.192 (3)135

Symmetry code: (i) .

  7 in total

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6.  2-(3-Meth-oxy-phen-oxy)pyrimidine.

Authors:  Shah Bakhtiar Nasir; Zanariah Abdullah; Zainal A Fairuz; Seik Weng Ng; Edward R T Tiekink
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