Literature DB >> 21588653

2-(4-Meth-oxy-phen-oxy)pyrazine.

Shah Bakhtiar Nasir1, Zanariah Abdullah, Azizah Mainal, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(11)H(10)N(2)O(2), the aromatic rings are almost orthogonal to each other [dihedral angle = 86.97 (8)°], with the benzene ring orientated to face one of the pyrazine N atoms. In the crystal, centrosymmetrically related pairs are connected via pairs of C-H⋯π inter-actions and the dimeric units thus formed pack into undulating layers that stack along the a axis.

Entities:  

Year:  2010        PMID: 21588653      PMCID: PMC3007882          DOI: 10.1107/S1600536810031946

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001 ▶); Abdullah (2005 ▶). For a related structure, see: Nasir et al. (2010 ▶).

Experimental

Crystal data

C11H10N2O2 M = 202.21 Monoclinic, a = 5.8783 (2) Å b = 10.9298 (4) Å c = 15.6430 (6) Å β = 97.109 (2)° V = 997.32 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.35 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer 5515 measured reflections 1743 independent reflections 1244 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.05 1743 reflections 138 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.12 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031946/hb5602sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031946/hb5602Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2O2F(000) = 424
Mr = 202.21Dx = 1.347 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1293 reflections
a = 5.8783 (2) Åθ = 2.3–22.4°
b = 10.9298 (4) ŵ = 0.10 mm1
c = 15.6430 (6) ÅT = 293 K
β = 97.109 (2)°Block, colourless
V = 997.32 (6) Å30.35 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEX CCD diffractometer1244 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
graphiteθmax = 25.0°, θmin = 2.3°
ω scansh = −6→6
5515 measured reflectionsk = −12→12
1743 independent reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0486P)2 + 0.0504P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
1743 reflectionsΔρmax = 0.13 e Å3
138 parametersΔρmin = −0.12 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.042 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.80138 (19)0.41576 (11)0.38163 (8)0.0650 (4)
O20.0132 (2)0.59432 (11)0.19506 (8)0.0638 (4)
N10.6059 (2)0.26379 (12)0.44535 (9)0.0494 (4)
N21.0286 (2)0.18218 (14)0.52555 (9)0.0599 (4)
C10.7989 (3)0.31704 (15)0.43404 (10)0.0442 (4)
C21.0109 (3)0.27760 (17)0.47408 (11)0.0544 (5)
H21.14260.31970.46420.065*
C30.8320 (3)0.12604 (17)0.53716 (12)0.0579 (5)
H30.83640.05780.57290.069*
C40.6268 (3)0.16632 (15)0.49808 (12)0.0559 (5)
H40.49480.12470.50820.067*
C50.5920 (3)0.45725 (15)0.33748 (11)0.0489 (4)
C60.5262 (3)0.41868 (15)0.25481 (12)0.0548 (5)
H60.61220.36030.22990.066*
C70.3328 (3)0.46665 (16)0.20906 (11)0.0554 (5)
H70.28810.44070.15290.066*
C80.2035 (3)0.55333 (14)0.24574 (10)0.0458 (4)
C90.2718 (3)0.59135 (15)0.32910 (11)0.0516 (5)
H90.18630.64940.35470.062*
C100.4674 (3)0.54303 (16)0.37434 (10)0.0548 (5)
H100.51450.56920.43030.066*
C11−0.1195 (3)0.68815 (16)0.22838 (12)0.0637 (5)
H11A−0.25090.70590.18750.096*
H11B−0.02780.76060.23860.096*
H11C−0.16910.66110.28150.096*
U11U22U33U12U13U23
O10.0391 (7)0.0747 (9)0.0790 (9)−0.0056 (6)−0.0008 (6)0.0292 (7)
O20.0585 (8)0.0683 (8)0.0606 (8)0.0168 (6)−0.0080 (6)−0.0020 (6)
N10.0386 (8)0.0495 (8)0.0588 (9)0.0018 (6)0.0009 (6)0.0061 (7)
N20.0492 (9)0.0715 (10)0.0566 (9)0.0120 (8)−0.0032 (7)0.0042 (8)
C10.0373 (9)0.0497 (10)0.0447 (9)0.0013 (7)0.0010 (7)0.0008 (8)
C20.0382 (10)0.0698 (12)0.0539 (10)0.0005 (8)0.0003 (8)−0.0011 (10)
C30.0598 (12)0.0538 (11)0.0584 (11)0.0097 (9)0.0007 (9)0.0081 (9)
C40.0482 (11)0.0502 (10)0.0682 (12)0.0001 (8)0.0035 (9)0.0089 (9)
C50.0404 (10)0.0500 (10)0.0553 (10)−0.0039 (8)0.0028 (8)0.0146 (9)
C60.0483 (11)0.0525 (11)0.0641 (11)0.0066 (8)0.0086 (9)−0.0053 (9)
C70.0571 (12)0.0596 (11)0.0484 (10)0.0020 (9)0.0018 (8)−0.0104 (9)
C80.0450 (10)0.0440 (9)0.0476 (9)−0.0007 (7)0.0026 (8)0.0036 (8)
C90.0553 (11)0.0511 (10)0.0490 (10)0.0072 (8)0.0082 (8)−0.0028 (8)
C100.0591 (11)0.0640 (11)0.0401 (9)−0.0019 (9)0.0017 (8)−0.0008 (9)
C110.0519 (11)0.0621 (11)0.0772 (13)0.0109 (9)0.0088 (10)0.0112 (10)
O1—C11.3563 (19)C5—C101.361 (2)
O1—C51.4096 (19)C5—C61.370 (2)
O2—C81.3639 (18)C6—C71.371 (2)
O2—C111.426 (2)C6—H60.9300
N1—C11.3062 (19)C7—C81.383 (2)
N1—C41.344 (2)C7—H70.9300
N2—C21.314 (2)C8—C91.380 (2)
N2—C31.341 (2)C9—C101.378 (2)
C1—C21.392 (2)C9—H90.9300
C2—H20.9300C10—H100.9300
C3—C41.357 (2)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—H40.9300C11—H11C0.9600
C1—O1—C5118.56 (12)C5—C6—H6120.2
C8—O2—C11118.05 (13)C7—C6—H6120.2
C1—N1—C4114.95 (14)C6—C7—C8120.56 (16)
C2—N2—C3116.22 (15)C6—C7—H7119.7
N1—C1—O1120.72 (14)C8—C7—H7119.7
N1—C1—C2123.03 (16)O2—C8—C9124.90 (15)
O1—C1—C2116.26 (14)O2—C8—C7115.92 (15)
N2—C2—C1121.37 (16)C9—C8—C7119.17 (16)
N2—C2—H2119.3C10—C9—C8119.77 (15)
C1—C2—H2119.3C10—C9—H9120.1
N2—C3—C4121.60 (17)C8—C9—H9120.1
N2—C3—H3119.2C5—C10—C9120.31 (16)
C4—C3—H3119.2C5—C10—H10119.8
N1—C4—C3122.83 (16)C9—C10—H10119.8
N1—C4—H4118.6O2—C11—H11A109.5
C3—C4—H4118.6O2—C11—H11B109.5
C10—C5—C6120.54 (16)H11A—C11—H11B109.5
C10—C5—O1119.79 (16)O2—C11—H11C109.5
C6—C5—O1119.42 (16)H11A—C11—H11C109.5
C5—C6—C7119.64 (16)H11B—C11—H11C109.5
C4—N1—C1—O1179.38 (14)C10—C5—C6—C7−0.2 (3)
C4—N1—C1—C2−0.8 (2)O1—C5—C6—C7−174.50 (14)
C5—O1—C1—N1−2.0 (2)C5—C6—C7—C8−0.2 (3)
C5—O1—C1—C2178.13 (14)C11—O2—C8—C93.5 (2)
C3—N2—C2—C1−0.2 (2)C11—O2—C8—C7−176.93 (14)
N1—C1—C2—N20.8 (3)C6—C7—C8—O2−179.41 (15)
O1—C1—C2—N2−179.37 (15)C6—C7—C8—C90.2 (3)
C2—N2—C3—C4−0.3 (3)O2—C8—C9—C10179.76 (15)
C1—N1—C4—C30.3 (2)C7—C8—C9—C100.2 (2)
N2—C3—C4—N10.3 (3)C6—C5—C10—C90.6 (3)
C1—O1—C5—C1090.59 (19)O1—C5—C10—C9174.88 (14)
C1—O1—C5—C6−95.10 (18)C8—C9—C10—C5−0.6 (3)
Cg1 is the centroid of the N1,N2,C1–C4 ring.
D—H···AD—HH···AD···AD—H···A
C9—H9···Cg1i0.932.873.6326 (18)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1,N2,C1–C4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯Cg1i0.932.873.6326 (18)140

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(3-Meth-oxy-phen-oxy)pyrimidine.

Authors:  Shah Bakhtiar Nasir; Zanariah Abdullah; Zainal A Fairuz; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  2 in total

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